AMCG00015157 (LOC103472502,LOC104927561,LOC103358743,LOC103394163,LOC108240267,LOC102201254)


Basic Information

Item Value
gene id AMCG00015157
gene name LOC103472502,LOC104927561,LOC103358743,LOC103394163,LOC108240267,LOC102201254
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3344374 ~ 3347587 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015157
ACTCTGTGTTAGTCTTTGTTTGCCCCTCAATCCTCATCTTCCGCCCTGCGAGCCTCGCCATGAACCCATACATCAAACTTCCGCCCCTCAGCGACAAATCACTTCCGCCCCTCACGCTCAActccctcttctctccctctcgcaTTGCATTGCGGGAAGACGCCCTTTTGTACGCGGGCTGGAAACCCTGTCTCTTTCTTTTCGCATCCGCCACCGACAGTGAAAGGGGCCCGGACAGTTCAGGTCTGGTCTACGCTTCTAAGAGGCGCAGGGGCCGCATTGCAGTCAAGCCGTCAGCGGTACACAATCGCAGAGCCGATCACGGCTATTAAATATGCCTTATCTTTCTCCTCCTGTCAGATGCCTGGTGTCACAGTAAAAGACGTGAATCAGCAGGAATTTGTCCGGGCACTGTCTGCCTTCCTCAAGAAGTCGGGCAAGCTGAAGGTGCCTGATTGGGTGGACACAGTCAAGCTGGCCAAGCACAAGGAGCTGGCACCCTGTGATGAGAACTGGTTCTACACCAGAGCCGccTCAACGGCGCGTCACCTGTACCTCCGGGGCGGTGCAGGCGTGGGCTCCATGACCAAGATCTACGGGGGGCGTCAGCGCAATGGCGTGTGTCCTTCTCACTTCAGCAAGGGCTCCAAGAACGTGGCGCGCAGGGTGCTGCAGGGGCTGGAGGGGCTCAAGATGGTGGAGAAAGACCCCAATGGgggccGCAGACTGACTCCTCAGGGCCAGAGGGACTTGGACAGAATTGCTGGCCAGGTGGCAGCTGCAAGCAAGAAACATTAACATTGTACAATTAATAAAGTCTTTTTTTGGTCACA

Function

NR:

description
PREDICTED: 40S ribosomal protein S19 isoform X1

GO:

id name namespace
GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0035284 brain segmentation biological_process
GO:0048821 erythrocyte development biological_process
GO:0006412 translation biological_process
GO:0045646 regulation of erythrocyte differentiation biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02966 RP-S19e, RPS19; small subunit ribosomal protein S19e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015157 True 833 mRNA 0.56 7 3344374 3347587

Neighbor

gene id symbol gene type direction distance location
AMCG00015158 NA coding downstream 31048 3303757 ~ 3313326 (-)
AMCG00015152 NA coding downstream 75613 3250981 ~ 3268761 (-)
AMCG00015153 LOC103393952,LOC100707815,LOC108229619,LOC101472794,LOC105916922,LOC105910646,LOC103360126 coding downstream 96786 3242110 ~ 3247588 (-)
AMCG00015154 NA coding downstream 104849 3235505 ~ 3239525 (-)
AMCG00015144 NA coding downstream 335763 3000816 ~ 3008611 (-)
AMCG00015156 NA coding upstream 4031 3351618 ~ 3358905 (-)
AMCG00015160 NA coding upstream 47300 3394887 ~ 3398152 (-)
AMCG00015159 NA coding upstream 55887 3403474 ~ 3407541 (-)
AMCG00015161 NA coding upstream 61002 3408589 ~ 3414202 (-)
AMCG00015163 megf8,LOC104957441,LOC106633547,LOC102782412,LOC106605571 coding upstream 69265 3416852 ~ 3464811 (-)
G95814 NA non-coding downstream 216782 3125431 ~ 3127592 (-)
G95798 NA non-coding downstream 350219 2993674 ~ 2994155 (-)
G95786 NA non-coding downstream 381029 2960335 ~ 2963345 (-)
G95778 NA non-coding downstream 398522 2943087 ~ 2945852 (-)
G95780 NA non-coding downstream 405279 2936294 ~ 2939095 (-)
G95933 NA non-coding upstream 124620 3472207 ~ 3472926 (-)
G95960 NA non-coding upstream 255017 3602604 ~ 3603677 (-)
G95957 LOC100846954 non-coding upstream 270186 3617773 ~ 3618298 (-)
G95968 NA non-coding upstream 382412 3729999 ~ 3730319 (-)
G95978 NA non-coding upstream 523489 3871076 ~ 3871334 (-)
G95854 NA other downstream 147185 3196421 ~ 3197189 (-)
G95850 lipe other downstream 155281 3186169 ~ 3189093 (-)
G95791 NA other downstream 363966 2978197 ~ 2980408 (-)
AMCG00015135 NA other downstream 452678 2887584 ~ 2891696 (-)
AMCG00015140 NA other downstream 465382 2874107 ~ 2878992 (-)
G95921 NA other upstream 2292 3349879 ~ 3350442 (-)
AMCG00015164 NA other upstream 256096 3603683 ~ 3607192 (-)
AMCG00015180 NA other upstream 762732 4110319 ~ 4123963 (-)
G96094 NA other upstream 827292 4174879 ~ 4180441 (-)
G96191 NA other upstream 1270124 4617711 ~ 4619264 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location