AMCG00015172


Basic Information

Item Value
gene id AMCG00015172
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3894791 ~ 3902338 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015172
ATGTATTTTCTGGGCGCAGTAGGCATGGACATGAGCACAGGAGATTTGAACCCAGCAGCCATCCCCACGGTCCCTGCCAACACACAGGGCGATGACCGTTGGATGTCACTgCACAATCGTTTTGTGTCGGACAGTAAGGACAAGGAGCCTGAGGTTCTATTTGTGGGCGACTCCCTTATCCAGCTCATGCACCAGTTTGAGGTGTGGCGGGAGCTCTTCTCTCCACTCCACGCACTGAATTTTGGGATCGGGGGGGACGCCACGCAGCACGTCCTTTGGAGACTGTCCAATGGGGAACTGGACCATATCAACCCCAGGGTGGTAGTGCTGTGGGTAGGCACTAACAACCATGGAGACACCCCTGATCAGATCGCTGGGGGCATCTGCGCTATTGTCCACCTCATCACCAACAAACTGCCCCGCGCACACGTCCTCATACTGGGTCTGCTGCCCCGTGGGAAACTCCCTAACCCGCTACGTGTTCGCAACGCCCAGGTCAATGCGCTGGTCCAGGCAGCACTGCCCTCGTTGCCCCGCGCCTCCTACCTGGACGTGGACCCCGGCCTGGTCCACTCCGACGGCACCATCTCCCCCCAGGACCTAAGCAACTAA

Function

GO: NA

KEGG:

id description
K16795 PAFAH1B2_3; platelet-activating factor acetylhydrolase IB subunit beta/gamma

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015172 True 612 mRNA 0.59 7 3894791 3902338

Neighbor

gene id symbol gene type direction distance location
AMCG00015171 NA coding upstream 5874 3884470 ~ 3888917 (+)
AMCG00015168 NA coding upstream 72328 3794466 ~ 3822463 (+)
AMCG00015167 NA coding upstream 137919 3754064 ~ 3756872 (+)
AMCG00015165 NA coding upstream 162827 3726913 ~ 3731964 (+)
AMCG00015166 NA coding upstream 231379 3639362 ~ 3663412 (+)
AMCG00015176 NA coding downstream 167744 4070082 ~ 4112144 (+)
AMCG00015185 NA coding downstream 286129 4188467 ~ 4196925 (+)
AMCG00015183 hsc70,LOC108441346,LOC103045816,LOC108241987,LOC107675864,LOC107745199 coding downstream 296148 4198486 ~ 4213829 (+)
AMCG00015184 NA coding downstream 313406 4215744 ~ 4218912 (+)
AMCG00015190 NA coding downstream 399297 4301635 ~ 4304037 (+)
G95977 NA non-coding upstream 23457 3871078 ~ 3871334 (+)
G95972 LOC103376870 non-coding upstream 83731 3810565 ~ 3811060 (+)
G95964 NA non-coding upstream 223121 3671389 ~ 3671670 (+)
G95950 NA non-coding upstream 293406 3601129 ~ 3601385 (+)
G95944 NA non-coding upstream 356455 3538132 ~ 3538336 (+)
G96059 NA non-coding downstream 332333 4234671 ~ 4283832 (+)
G96061 NA non-coding downstream 342049 4244387 ~ 4299500 (+)
G96063 NA non-coding downstream 349325 4251663 ~ 4255472 (+)
G96060 NA non-coding downstream 390721 4293059 ~ 4296312 (+)
G96072 NA non-coding downstream 397568 4299906 ~ 4300232 (+)
G95955 NA other upstream 252591 3641940 ~ 3642200 (+)
AMCG00015142 NA other upstream 923446 2965301 ~ 2971345 (+)
G95704 NA other upstream 1064170 2820467 ~ 2830621 (+)
G95693 NA other upstream 1086296 2806811 ~ 2808495 (+)
G95624 NA other upstream 1228665 2664504 ~ 2666126 (+)
AMCG00015170 NA other downstream 1361 3903699 ~ 3916734 (+)
AMCG00015173 NA other downstream 31578 3933916 ~ 3949420 (+)
G95992 NA other downstream 67491 3969829 ~ 3971683 (+)
G96030 NA other downstream 186863 4089201 ~ 4100140 (+)
AMCG00015197 NA other downstream 681359 4583697 ~ 4667058 (+)

Expression


Co-expression Network