AMCG00015191 (psenen)


Basic Information

Item Value
gene id AMCG00015191
gene name psenen
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4295433 ~ 4300203 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015191
GAGGAGACGTGTCTTCACACTACATATCCCAGCGAGCACCGCGGCGCAGACCGCGGAAGCGGAACTGTGGAAATCAAAGTAGCGAGGGCTTGTTTTGGATGCTTCtcgtttttctcttttccttttgtttctctgccttttgacccccctccccctcagcgGAGACGGAGCGTATTCCCGACAGAGACGTCCAGGACATTTCTTACAGTGGAGAAAGAGAGTTTGTGAGGACAGAGGAGCCGCCATGAACCTGGAAAGAGTCCCGAACGAGGAGAAACTCAACCTGTGTAGAAAATACTACCTGGgagGGTTTGCGCTGCTGCCATTCCTGTGGCTGGTCAATGTCGTGTGGTTTTTCCGGGAGGCCTTCATGAAGCCGGCTTTCACCGAGCAACCTCTCCTCAAGACCTATGTGAAGAGGTCGGCAGTGGGGCTGTTACTCTGGGTGGCTGTTCTCACCACCTGGATCACTATCTTCCAGCACTCCAGAGCGCAGTGGGGCGAGGTGGGAGACTACCTCTCCTTCACCATTCCTCTTGGCatcccctaaaaaaaaaaaaaaaaaaaagtgtttgaggggagggtggtggtggggacAGAAGCAGCAGTGGAAgagagggtttttttttttttttttttttgtcaggtCTTTGTTGTGTGGCCCACGTGCCATTGCAGCTGGCAGTCATGGGTTCAGTCCCCAGAGGCCAATTGGTGTCTGTGCCCTGGGCTCCTGCTCCAGCCACAGTTAACTGGCTGCTGTGTCCAAACTCCCTCCCAGCAATCCCCTGTGGTCGTGTTCTTTTTGCCGGGAGGGGCCACGGCATGATCGTAATCGGGGGGGATTCAGGCCAATCGTGGAGGAAgctgagctgggctggaacaccATGATAAAGATTCTGCAGCCCCTTCCCTACAGGAACCGAGTTGCCTCCACTTCCCGTCCCCGACATTCCTTCCTGTTATCCTCTGAAGCAGACCCTGCCCCTACTACATTCGGTTTATTGTATGCAGtagtgtattataatatattttacatgccctgctgtactTTAATGACCTTCTTGATCTTATGTCAGTCCTGGTGCTAGACACCCCTTGATTTTTTGGCTTGGATTGCAGATGAGCTCTCAGTTACCTAGTGGAAGCCTTAATTGAAATCCCGGATTGATAGAGAGGATTTTTCAACTGCGTTC

Function

symbol description
psenen Acts upstream of or within developmental pigmentation; melanocyte migration; and negative regulation of neuron apoptotic process. Predicted to be integral component of membrane. Predicted to be part of gamma-secretase complex. Is expressed in forebrain; hindbrain; midbrain; presumptive neural retina; and trunk. Human ortholog(s) of this gene implicated in hidradenitis suppurativa. Orthologous to human PSENEN (presenilin enhancer, gamma-secretase subunit).

NR:

description
PREDICTED: gamma-secretase subunit PEN-2

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06170 PSENEN, PEN2; presenilin enhancer 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015191 True 1196 mRNA 0.52 5 4295433 4300203

Neighbor

gene id symbol gene type direction distance location
AMCG00015192 NA coding downstream 2136 4290597 ~ 4293297 (-)
AMCG00015187 NA coding downstream 13804 4275770 ~ 4281629 (-)
AMCG00015186 NA coding downstream 38090 4256267 ~ 4257343 (-)
AMCG00015188 LOC104961374 coding downstream 85904 4206275 ~ 4209529 (-)
AMCG00015177 NA coding downstream 110914 4181952 ~ 4184519 (-)
AMCG00015194 NA coding upstream 65233 4365436 ~ 4371175 (-)
AMCG00015193 NA coding upstream 108282 4408485 ~ 4424905 (-)
AMCG00015195 NA coding upstream 136342 4436545 ~ 4452947 (-)
AMCG00015199 NA coding upstream 319161 4619364 ~ 4630222 (-)
AMCG00015202 LOC106605622 coding upstream 370501 4670704 ~ 4679051 (-)
G96115 NA non-coding downstream 39949 4251882 ~ 4255484 (-)
G96110 ctrl,LOC103045314,LOC108277669,LOC108441368,LOC107745200,LOC102296088 non-coding downstream 78539 4215727 ~ 4216894 (-)
G96010 NA non-coding downstream 256215 3903697 ~ 4039218 (-)
G96009 NA non-coding downstream 258262 3901812 ~ 4037171 (-)
G96125 NA non-coding upstream 1429 4301632 ~ 4301940 (-)
G96127 NA non-coding upstream 14490 4314693 ~ 4314916 (-)
G96128 NA non-coding upstream 15994 4316197 ~ 4316936 (-)
G96130 NA non-coding upstream 20835 4321038 ~ 4321271 (-)
G96131 NA non-coding upstream 28893 4329096 ~ 4329398 (-)
G96094 NA other downstream 114992 4174879 ~ 4180441 (-)
AMCG00015180 NA other downstream 171470 4110319 ~ 4123963 (-)
AMCG00015164 NA other downstream 688241 3603683 ~ 3607192 (-)
G95921 NA other downstream 944991 3349879 ~ 3350442 (-)
G95854 NA other downstream 1098244 3196421 ~ 3197189 (-)
G96191 NA other upstream 317508 4617711 ~ 4619264 (-)
AMCG00015203 NA other upstream 478190 4778393 ~ 4802904 (-)
AMCG00015210 NA other upstream 667847 4968050 ~ 4976350 (-)
AMCG00015211 NA other upstream 685369 4985572 ~ 5083187 (-)
AMCG00015230 NA other upstream 1094183 5394386 ~ 5463028 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G140684 NA non-coding CI01000027 null 5118468 ~ 5164862 (+)
tiger barb (Puntius tetrazona) G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 unknown NC_056713.1 CM032082.1 20184120 ~ 20249972 (+)