AMCG00015197


Basic Information

Item Value
gene id AMCG00015197
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4583697 ~ 4667058 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015197
GGAGAGGAACGGGAGGCATGAGCAGGTCACCTTCCTGACCAACAAAGAGAAGATGCCCTCACAGCGGCGTGGAGGCTGCATTGCCGGGGTGATCGTAGGGCTGCTGGTCCTTGGAGCCATTGCTGGGGTCCTCATCTATTTCTTCGCAGTTAAACCCAATAAGTCCAGTGTCGGCAGTGTGACTTCCCGGCAGATGGACCAGACATTGGTGTACAGTGGACACCTTGTACTGGACAACATTCCCTACAACAAGCAGCTGGAAAACCCCCAGTCCACTGCCTTCATCGAGATGGCTGACAAACTGGAGAAAATGCTGTGGTCCACCTACAAAGAGGACCCCCTCCTGTCCAAGTACTACAACAGATCTGTCATCTCGGCCTTCAGTGAGGGCAGTTTGATTGCATATCACTGGACGCAGTTCGTGGTGCCAGCTGCGGAGCAGCAGGTGCAGTCGGAGATCACCGAGCAGCGCGTCGCCAGGGCCCTGCGCACAGGCATCCGACAGGCGGGCAAGGAGTTAGTCGTCACCAGTGTCACTGTCTCCCGTGGGCTAGACGCAAACACGGACTTACAGGGTTTTGAGTCGCCGGACTACCCCAATCAGTACCCACCCCACACCCGGTGCCTTTGGCAGATCCGGGGGCCACCCAACAGCTCCATCTTCCTAGACTTCCCGGACTTCAACGTGGAGGATGACTGCGCCAACGCCTTCGTCTACATCTACGACTCGTTCAGCCCCGACGAGACCCGGGCCATCACCAAGAAGTGTGGTCAGAGGCCGCCCACTAACCCTCTGGAGGTGGTCTCCTCCGagtGTGGTGGGGTCCTCGAAGCGCCGAGTGGGAACTTCAGTTCGCCCTATTATCCCAGCTTCTACCCCCCAAATGTGGAGTGCACGTGGATGATCAAGGAGCCGGGGGTGGATGTGCGAGTGTGTCACAAGGACTACGTGGAGGTCCTGGGAGTCAAGTACTGTGGAGAGCGCATCCAGCTGGCTATAGGTAGCACCAATAACACCCTGACTGTGAAGTTCCGGTCCGATGGGTCCCACACGGACAAGGGCTTCCTGGCTACATACAGcgcctatgaccccaagaaccCCTGTCCTAACCAGTTCACATGTGCATCTGGGATCTGCATCAAATCCCAGCTGCACTGCGACGGGTGGAATGACTGCGGAGACATGAGCGATGAAGTCAACTGCCGCTGTGACAAGGACCAGTTTGTTTGTGCCAACGGGATGTGCAAACCGCTATACTGGGTCTGCGACCGAGTCAACGACTGTGGAGACGGCAGCGACGAGAAACAGTGCAGCTGCACCAGTAAGGAGTGGCGCTGTGGCGACGGCACTTGTATTCCTCGGGAACAGCAGTGCAACGGACAGAAGGAGTGCGCGGACGGCAGTGACGAGTCCAACTGCCAGGCCTctaCGAGGACCTGCACTGACTTCAGTTTCAGGTGCAAGAACGGCGAGTGTGTGAACAAGGTGAACGCAGAGTGCGACCAGGAGAATGACTGTACGGACAGCTCCGACGAGGAAAACTGCGACTGTGGGGTAAGGCCCTACAAGCACAACCGCATCGTTGGGGGGGTGAACGCGGACGTCGGCGAGTGGCCCTGGCAGGTCAGCCTGCACTTCAGCACCATGAACCACGTGTGCGGGGCGTCCATCCTGTCCAGCACCTGGCTGCTGTCTGCCGCTCACTGCTTCAAGTCCGCCCAGCCAGATTTCCTGAAGCCCGAGTTGTGGATGACCTACAGTGGCATGCGGGACCAGCAGGACATGGAGGAGGTGCAGGTGAGGAAGGTGAAGCGTGTGCTGCCCCACCCCAGCTACAACCCCATGACCTACGACTACGACATCGCCCTGCTTGAGCTGGCCGTGCCCCTGGAGTTCAGCAACACCATCCACCCCATCTGCCTGCCTGCCGCTACCCACGTCTTCCCCGCCGGCATGAGCTGCTGGGTGACAGGCTGGGGCACTCTCAGGGAAGGAGGCAGCGTGTCCAGGCTGCTGCAGAAGGCGGAGGTGAAGATCATCAATGACACTGTGTGTGACGTGGTGACCGAGGGTCAGGTCTCCTCCCGCATGATGTGCAGCGGGTTCTTGGCCGGGGGGGTTGACGCCTGCCAGGGAGACTCTGGGGGACCCCTGGTATGTCGGGAGGAGAGTGGGACTTGGTTCCAGTCGGGCATCGTGAGCTGGGGGGAGGGCTGTGCGCGGCGCAACAAGCCCGGGGTCTACAGCAGGGTCACCAAACTCCGCAACTGGATCACCGAGATCACTGGGATATAgacagaggggagggggggacagatggagagaaggtggagggagggatggaggagaGGGTAGAGGGAAAGTGGAGGGAACGAGGGGGAAGTGAAACCTATTGGTTTGAGGATCCTGCTCACTGGGGCTCATTCCACAGAGATGTACATAGGCAGTCCTACACTGACATGGCTGTGCTTTAACGCCACAGTGAAGCACAGCCTTGTCACTGTACATCTGCTCATAGTCTACCTATGGCATATGGGCAGGATGTTTTTATAATCTGCTCACAtcctttaaatcaaattatactggtgcattttattcattaaacagaaataaaaatgtctctGTTAATTGGCCAACTTGCATTCTGCACATCACTAATTCACACTCTACAGTTGATCAATAACCTTAATTCATGCTCTCCCCCATTCCCTGACCCTGTTTTAACTGCctagatcagtggttttcaaaccggtcctggagtaccccctgccctgctggtttttgttccaacctaggtcttaattgcttaattgaatccttaattgacctaacaaagcaatataccattcatttaagacctaggttggaacaaaaaccagcagggcaggaggtactccaggaccagtttgaaaacccctggccTAGATAGATAGGTCTgcctttttccccttttttggcaaattagttattttctccTGGTTAGGAAGCAGAAGAGTTTTAACTTGAACCAACATCGGATTATGATTTTAAAGGCTGATATTCACAAACTCTGTGAAACTTCCACCTCACCTGTACTCATGGGAAGGGGATTATTAAAATGGGCATGACATTGATCAGGTTATTGGTTAAGGAAGttcattaattacttttttttgtattgttctaaTGTATACAGTATTTGAAAACACTAGACTCATTCACCCatatttgtttctgcttttgtcTTCTCGACTATATTTTCTGTCTCGAATACGTTTTGGagggacatttttattatctaCATTGAATGGGCTTTGGCTCGTAACCAGTGTACATTTATGTTAAGTGCCTTAAGGAGAATGGGGGTGTCtgtggggaggggagaggggtgggggggctggatGTAAATACTGAATTTGTAcaaattttataattttgaGATCATATGCCAGCACTGATGGTGTTGTGAatcatattaaagaaaataacccCCCAAAAAGGacctattttaaatatttgtgttatatctgagattttgtattttataataaacgCTATGTTCTTCTCTCCA
>TU119928
AGGACCCAGGACCGGtttgaaaacccctggccTAGATAGATAGGTCTgcctttttccccttttttggcaaattagttattttctccTGGTTAGGAAGCAGAAGAGTTTTAACTTGAACCAACATCGGATTATGATTTTAAAGGCTGATATTCACAAACTCTGTGAAACTTCCACCTCACCTGTACTCATGGGAAGGGGATTATTAAAATGGGCATGACATTGATCAGGTTATTGGTTAAGGAAGttcattaattacttttttttgtattgttctaaTGTATACAGTATTTGAAAACACTAGACTCATTCACCCatatttgtttctgcttttgtcTTCTCGACTATATTTTCTGTCTCGAATACGTTTTGGagggacatttttattatctaCATTGAATGGGCTTTGGCTCGTAACCAGTGTACATTTATGTTAAGTGCCTTAAGGAGAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015197 True 3551 mRNA 0.53 17 4660088 4667058
TU119928 False 451 lncRNA 0.37 2 4583697 4666849

Neighbor

gene id symbol gene type direction distance location
AMCG00015189 NA coding upstream 219990 4305888 ~ 4363707 (+)
AMCG00015190 NA coding upstream 279660 4301635 ~ 4304037 (+)
AMCG00015184 NA coding upstream 364785 4215744 ~ 4218912 (+)
AMCG00015183 hsc70,LOC108441346,LOC103045816,LOC108241987,LOC107675864,LOC107745199 coding upstream 369868 4198486 ~ 4213829 (+)
AMCG00015185 NA coding upstream 386772 4188467 ~ 4196925 (+)
AMCG00015200 NA coding downstream 76439 4743497 ~ 4765459 (+)
AMCG00015201 NA coding downstream 101481 4768539 ~ 4782430 (+)
AMCG00015206 NA coding downstream 137592 4804650 ~ 4806385 (+)
AMCG00015204 NA coding downstream 139838 4806896 ~ 4838370 (+)
AMCG00015205 NA coding downstream 179896 4846954 ~ 4861816 (+)
G96083 NA non-coding upstream 190228 4388148 ~ 4393469 (+)
G96072 NA non-coding upstream 283465 4299906 ~ 4300232 (+)
G96061 NA non-coding upstream 284197 4244387 ~ 4299500 (+)
G96060 NA non-coding upstream 287385 4293059 ~ 4296312 (+)
G96059 NA non-coding upstream 299865 4234671 ~ 4283832 (+)
G96203 NA non-coding downstream 1264 4668322 ~ 4668784 (+)
G96204 NA non-coding downstream 1835 4668893 ~ 4669390 (+)
G96205 NA non-coding downstream 2414 4669472 ~ 4670175 (+)
G96326 NA non-coding downstream 368980 5036038 ~ 5036271 (+)
G96384 NA non-coding downstream 526914 5193972 ~ 5194179 (+)
G96030 NA other upstream 483557 4089201 ~ 4100140 (+)
G95992 NA other upstream 612014 3969829 ~ 3971683 (+)
AMCG00015173 NA other upstream 634277 3933916 ~ 3949420 (+)
AMCG00015170 NA other upstream 666963 3903699 ~ 3916734 (+)
G95955 NA other upstream 941497 3641940 ~ 3642200 (+)
G96264 NA other downstream 209063 4876121 ~ 4879896 (+)
G96317 LOC100846954,LOC107575789 other downstream 354308 5021366 ~ 5022052 (+)
AMCG00015212 NA other downstream 400989 5068047 ~ 5077903 (+)
AMCG00015215 NA other downstream 417516 5084574 ~ 5119401 (+)
G96415 NA other downstream 721879 5388937 ~ 5391723 (+)

Expression


Co-expression Network