AMCG00015202 (LOC106605622)


Basic Information

Item Value
gene id AMCG00015202
gene name LOC106605622
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4670704 ~ 4679051 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015202
AGCCAAAGCAGCCTACTTCTCCCAGCAACCCCAGGATCAGGTTGTGGTGTCCGGCCAGTCCGTGACCCTGCCCTGCGTGATCGTGGGCTACCGAGGGATGGTTCAATGGACCAAGGATGGGCTGGCCTTGGGCGGGGAGAGAGATCTACCAGGTTGGACGCGGTACTCCATCATGGGCGACGCGCTGTCGGGAGAGCACAGCCTGCAGGTCGACGCTGCGGAGCTGGCGGACGACGCGGTGTACGAGTGCCAGGCCACGCAGGCGGCGCTGCGGTCGCACCGCGCTAAACTCACCGTGCTCGTGCCCCCAGGTGACCCCGTGGTGGAGGGCGGCCCCATAGTGAGGCTGAAGGCCCTCACTCCCTACAACCTGACCTGCCGCGCCCCCGGAGCCAAGCCAGCCGCCCAAATCACCTGGTACAGGGACGGGGAGCTGCAGGACTCGGCCATCTACAGCAAGacgCTGATGGACGATGGAAAGAGGGAGCTGGCTCTGAGCGTGTTGCCCGTGACCCCGGACGACAGGGACTCGGGGCGTACCTACACCTGCCGGGTCACCAACCCGGCCGCCCCCGCCGGGAAGCAGACCTCCGTGACCCTCAATGTCCAGCaccCCCCATCGGTCACCCTGTCTGTGCAGCCCCAGACAGTGATGGAAGGGTCCAAGGTCCTGTTTCTCTGCTCAGCTTCTGCCAACCCCGACATCACCGGATACAGgTGGGCGAAGGGTGGGCTGCCCATCTCAGAGGCCAATGGGGACAGCCTGGAGGTGACCGTGGACCCCTCCTACTTCACTGACCCTGTGTCCTGCGAGGTGTCCAACTCTGTGGGCAGCACCAACGTCAGCACCCTAGTGGACGTGCAGTTTGGACCCAGGCTGCTGTCAGAGCCCCGGCCGCTCTCAGTGGACGTGGGGATGGACGCGGCCTTCACCTGCTCCTGGACCGGCAATCCCCCTCTCACCCTGGCCTGGACCAAAGTGGGCTCCAGTGTGGTGCTGAGCAATGGCAACACACTGCAGCTGAAGGCCGTGACCCAAGATGACGCTGGCACCTACTCGTGCAAGGCCATCGTGCCCCGTATCGGGGTTGCAGAGAAGGAAGTCACACTCACCGTCAACGGCCCCCCCATCATCACAGCTGATGCCACCCAACACGCTGCCAAGAAAACCAAGGGCAAGTTGGAGTGTCTGGTGACCAGCAGCCCCCCACCCGACAAGATTgtgtggTCGTTCGGGGAGCAGAGTCTAGGGGGGGGCTCGGACGGGCGGTTCTCAGTTGTCACCGTGGTGACAGAGCGGGGGGTGATGTCCTCGTTGGTGCTGGCGGAGACGCTGCCCACCGACTTCACCCACCGATACAACTGCACCGCCTGGAACCGCTTCGGCTCCGGCACCGCCCTCATCACCCTGCAGGAGCAAGAagccctccctctggtggtgatCATTGGCGCAGCAGTGGGTGGCGGCTGCGTCCTTCTCATCATCCTCATCTCCGTGGCCTCACTGTGCTGCCGCAGCTCTGGCAAAGACCACGCCCCATTCCCAGCCCTGTTCCTTAAACTGGCTGAATCTGTGGGGGAACCCAGTGCTGCTTCTGTAGTCATTCAGTATTGCTCCAGCGGCTTCTCTGAGTACGTGCCCGCCGCCCGGTCCCTGTACCCCACTGCCCAGCTGCCCTCGCCCAGCCCCCTGTACACCCACTCTGCCCCCCCAGCTGCGGCCTCCACCGCCGCTGCTGCCGCCGTCGCCCCCCCCCGCCTGTATGACTTCACCCTGCGCTACGGCACGACCCCGGGGGTGCGCACGGCCTacgagcagcagcagcagcaacaggaGCGACTGGACCGGATGGACCGCATGTACCCCCCGGAGCCCCTCTACGGCGGCTCAGCCTACCTCCCCGCCACCTACGGCCGGGCCTTCACCAGCTACGTCAAGCCTGTGGCCTATGACAAGGTGGAGGCCTACGAGCACTCGGACCAGGCGAGCAAAGTGTCGAGCTCCTCGCGCTTCTCCTATGCCTCGTCCCACGTGTCCTCGCAGCAGTCGGACTACGGGCGCCCCTCGCAGCAGAGGATGCAGACGCACGTGTGA

Function

NR:

description
PREDICTED: kin of IRRE-like protein 3 isoform X18

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015202 True 2095 mRNA 0.65 13 4670704 4679051

Neighbor

gene id symbol gene type direction distance location
AMCG00015199 NA coding downstream 40482 4619364 ~ 4630222 (-)
AMCG00015195 NA coding downstream 217757 4436545 ~ 4452947 (-)
AMCG00015193 NA coding downstream 245799 4408485 ~ 4424905 (-)
AMCG00015194 NA coding downstream 299529 4365436 ~ 4371175 (-)
AMCG00015191 psenen coding downstream 370501 4295433 ~ 4300203 (-)
AMCG00015209 NA coding upstream 190963 4870014 ~ 4871029 (-)
AMCG00015208 NA coding upstream 192003 4871054 ~ 4872720 (-)
AMCG00015217 NA coding upstream 410783 5089834 ~ 5113520 (-)
AMCG00015216 NA coding upstream 440147 5119198 ~ 5125146 (-)
AMCG00015220 NA coding upstream 484356 5163407 ~ 5166705 (-)
G96208 NA non-coding downstream 1418 4668903 ~ 4669286 (-)
G96148 NA non-coding downstream 277724 4390840 ~ 4392980 (-)
G96136 NA non-coding downstream 326635 4343868 ~ 4344069 (-)
G96134 NA non-coding downstream 333433 4337009 ~ 4337271 (-)
G96133 NA non-coding downstream 337932 4332515 ~ 4332772 (-)
G96271 NA non-coding upstream 203018 4882069 ~ 4889321 (-)
G96300 NA non-coding upstream 215703 4894754 ~ 4911505 (-)
G96314 NA non-coding upstream 337335 5016386 ~ 5016609 (-)
G96318 LOC100846954 non-coding upstream 342209 5021260 ~ 5022065 (-)
G96329 NA non-coding upstream 359239 5038290 ~ 5038491 (-)
G96191 NA other downstream 51440 4617711 ~ 4619264 (-)
G96094 NA other downstream 490263 4174879 ~ 4180441 (-)
AMCG00015180 NA other downstream 546741 4110319 ~ 4123963 (-)
AMCG00015164 NA other downstream 1063512 3603683 ~ 3607192 (-)
G95921 NA other downstream 1320262 3349879 ~ 3350442 (-)
AMCG00015203 NA other upstream 99342 4778393 ~ 4802904 (-)
AMCG00015210 NA other upstream 288999 4968050 ~ 4976350 (-)
AMCG00015211 NA other upstream 306521 4985572 ~ 5083187 (-)
AMCG00015230 NA other upstream 715335 5394386 ~ 5463028 (-)
AMCG00015244 NA other upstream 1074542 5753593 ~ 5757109 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008697 kirrel3l coding NC_007126.7 CM002899.2 36941490 ~ 37020342 (+)