AMCG00015211


Basic Information

Item Value
gene id AMCG00015211
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4985572 ~ 5083187 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015211
ATGAAGGTGGGGAATGAGATATTTCAAGCGAGTGGTTGTGCCTACCTTCTAAGGAAGAGGACCGTCAGCACTGCTATGGCAATGGCCAAAACTGGGACAGTAAGAGCCGAAGACAGGACAGCCACACTCAGCCTGGCTGTGGGCGACGCGGGTGAGGAATCGAGGCAGCGCCTGCAGCTGCGCGGTTCCGCACTGGGTGCATCGGAAGCGGCCGCTGTTTCCCGACACCTCCGCCCTTCGCGAAAgGATGTTGTCCTGAAATTGCTCCAGTATGAGGCCTCTACCAACGTGGCCGACATCAAAGGCTGTTTCCCACTTCACCTGGCCACCTGGAAGGGAGATGTGGAGATAGTGAAGATCCTCATTCATCACGGCCCCTCTCACTGCAGAGTCATTGAACAGgaattgaggaaaacaatacaaggaccaagACTCGGAAAAATGTCCAACACTTCCATGGAGCAAACTGTGATTGGAGTGTATGTCATACAGAAGGAGGGTAAGGAGCCTGGAGATGACCCACAGGACATCGGTGTCCTGATTAAAGTAAACAATGGATCTTTCCGCGGCATTGGTGCTCTGTTCCAGTTTTGCCACCAGCTTAGcCTTTTAAATGCCCTGGATGTGGCTGCAGAGACGATTGTTCGGCACTGGCTCTCCATGTGGCGTTCTGCCgggAGGCTAAACTCCAACATCGTTCTCACCCTTAGTCTGGATGAGATGTTTAATGCCTATTACTTAACAGTTCATTGGAGGTTTGGGGACAGGGGCTGGGCTACGACCAGCACGGCAGCCCTTTTCATTATGTCCTACGGAAGGCGGGAGAGGAGGGACAGAGTCAAAAAGATGCAGAAATGCACGGATTACGAGTCTCTCCGGATTGGCGGGCTGATATTCGCAGTGGTCCTCTTCCTCATGGGAATCTTCCTCATCCTCAAACTGGAGAGCCTGACGAGGAGGCTGGGAATCTGA
>TU120088
CCGGACTCCGCTACTAAACCTGAACTTGGAATAGATCCAGGGACCGGGCTGAGTTACAGACTGGCCAGCTGTTGGAGCTCCTCACAGCACTCACAGCCCCAGCGCTTTAAAGACGTCGGCGACACTACACGCGAAACAgcggaattaaaaaacaacaaacttaaGACCCAACTCCGCAAAATCCGAATCAGAGCAGGGACATTGCTTAGACTGTAAGACTtggatttttctttgtttgggtGTATTTAGTCGTTTTCTTTATTGCAGTCGCTGATTTAAAAAGACACGCTTCTTTATTTTCGTAAACAATGGATCTTTCCGCGGCATTGGTGCTCTGTTCCAGTTTTGCCACCAGCTTAGCAGCATCCAGTACTGAAGACCTGGATAGAGACCAGCACGGCAGCCCTTTTCATTATGATTACGAGTCTCTCCGGATTGGCGGGCTGATATTCGCAGTGGTCCTCTTCCTCATGGGAATCTTCCTCATCCTCAgCCGAAAATGTCGCTGCAAGTTCAATCAGCAACACCCAACTGGAGAGCCTGACGAGGAGGCTGGGAATCTGAGAGCATCTATCAGACGGATGTCGAGCAGGAAGCGATAAGCAGTGGACAGGCTTCAGGTGTCCCCTGAGATGCCAACCAGTGCCACTATGATGCCGCGTCACACAGGGCAGCACACAGCACTGTTTCTGTTTGCAATCGTAGCTAGTTGTGCGCTGGAAGTCAGTTTTGAATGCGCCAACCTAACTCATCTGCTTCTGCTACTTTTTCATCTTTGactgtctgtctatctcttgctctcatatttttttctatacaaaaggaacaaaaagaTATGTATATCGAAAGCATCAAGAATAAGGAGCATCAACGTTGAATCAGAAGTgttctattgttttttctccctgCGCTGCAAGCgaactataaataaaaacattttccaaataattcca
>TU120089
CCGGACTCCGCTACTAAACCTGAACTTGGAATAGATCCAGGGACCGGGCTGAGTTACAGACTGGCCAGCTGTTGGAGCTCCTCACAGCACTCACAGCCCCAGCGCTTTAAAGACGTCGGCGACACTACACGCGAAACAgcggaattaaaaaacaacaaacttaaGACCCAACTCCGCAAAATCCGAATCAGAGCAGGGACATTGCTTAGACTGTAAGACTtggatttttctttgtttgggtGTATTTAGTCGTTTTCTTTATTGCAGTCGCTGATTTAAAAAGACACGCTTCTTTATTTTCGTAAACAATGGATCTTTCCGCGGCATTGGTGCTCTGTTCCAGTTTTGCCACCAGCTTAGCATCCAGTACTGAAGACCTGGATAGAGACCAGCACGGCAGCCCTTTTCATTATGATTACGAGTCTCTCCGGATTGGCGGGCTGATATTCGCAGTGGTCCTCTTCCTCATGGGAATCTTCCTCATCCTCAgCCGAAAATGTCGCTGCAAGTTCAATCAGCAACACCCGGATGTCGAGCAGGAAGCGATAAGCAGTGGACAGGCTTCAGGTGTCCCCTGAGATGCCAACCAGTGCCACTATGATGCCGCGTCACACAGGGCAGCACACAGCACTGTTTCTGTTTGCAATCGTAGCTAGTTGTGCGCTGGAAGTCAGTTTTGAATGCGCCAACCTAACTCATCTGCTTCTGCTACTTTTTCATCTTTGactgtctgtctatctcttgctctcatatttttttctatacaaaaggaacaaaaagaTATGTATATCGAAAGCATCAAGAATAAGGAGCATCAACGTTGAATCAGAAGTgttctattgttttttctccctgCGCTGCAAGCgaactataaataaaaacattttccaaataattcca
>TU120090
CCGGACTCCGCTACTAAACCTGAACTTGGAATAGATCCAGGGACCGGGCTGAGTTACAGACTGGCCAGCTGTTGGAGCTCCTCACAGCACTCACAGCCCCAGCGCTTTAAAGACGTCGGCGACACTACACGCGAAACAgcggaattaaaaaacaacaaacttaaGACCCAACTCCGCAAAATCCGAATCAGAGCAGGGACATTGCTTAGACTGTAAGACTtggatttttctttgtttgggtGTATTTAGTCGTTTTCTTTATTGCAGTCGCTGATTTAAAAAGACACGCTTCTTTATTTTCGTAAACAATGGATCTTTCCGCGGCATTGGTGCTCTGTTCCAGTTTTGCCACCAGCTTAGCATCCAGTACTGAAGACCTGGATAGAGACCAGCACGGCAGCCCTTTTCATTATGATTACGAGTCTCTCCGGATTGGCGGGCTGATATTCGCAGTGGTCCTCTTCCTCATGGGAATCTTCCTCATCCTCAgCCGAAAATGTCGCTGCAAGTTCAATCAGCAACACCCAACTGGAGAGCCTGACGAGGAGGCTGGGAATCTGAGAGCATCTATCAGACGGATGTCGAGCAGGAAGCGATAAGCAGTGGACAGGCTTCAGGTGTCCCCTGAGATGCCAACCAGTGCCACTATGATGCCGCGTCACACAGGGCAGCACACAGCACTGTTTCTGTTTGCAATCGTAGCTAGTTGTGCGCTGGAAGTCAGTTTTGAATGCGCCAACCTAACTCATCTGCTTCTGCTACTTTTTCATCTTTGactgtctgtctatctcttgctctcatatttttttctatacaaaaggaacaaaaagaTATGTATATCGAAAGCATCAAGAATAAGGAGCATCAACGTTGAATCAGAAGTgttctattgttttttctccctgCGCTGCAAGCgaactataaataaaaacattttccaaataattcca
>TU120091
CCGGACTCCGCTACTAAACCTGAACTTGGAATAGATCCAGGGACCGGGCTGAGTTACAGACTGGCCAGCTGTTGGAGCTCCTCACAGCACTCACAGCCCCAGCGCTTTAAAGACGTCGGCGACACTACACGCGAAACAgcggaattaaaaaacaacaaacttaaGACCCAACTCCGCAAAATCCGAATCAGAGCAGGGACATTGCTTAGACTGTAAGACTtggatttttctttgtttgggtGTATTTAGTCGTTTTCTTTATTGCAGTCGCTGATTTAAAAAGACACGCTTCTTTATTTTCGTAAACAATGGATCTTTCCGCGGCATTGGTGCTCTGTTCCAGTTTTGCCACCAGCTTAGGGTCCCCGTTTGGCAGGTTTACGCATGCAGCATCCAGTACTGAAGACCTGGATAGAGACCAGCACGGCAGCCCTTTTCATTATGATTACGAGTCTCTCCGGATTGGCGGGCTGATATTCGCAGTGGTCCTCTTCCTCATGGGAATCTTCCTCATCCTCAgCCGAAAATGTCGCTGCAAGTTCAATCAGCAACACCCAACTGGAGAGCCTGACGAGGAGGCTGGGAATCTGAGAGCATCTATCAGACGGATGTCGAGCAGGAAGCGATAAGCAGTGGACAGGCTTCAGGTGTCCCCTGAGATGCCAACCAGTGCCACTATGATGCCGCGTCACACAGGGCAGCACACAGCACTGTTTCTGTTTGCAATCGTAGCTAGTTGTGCGCTGGAAGTCAGTTTTGAATGCGCCAACCTAACTCATCTGCTTCTGCTACTTTTTCATCTTTGactgtctgtctatctcttgctctcatatttttttctatacaaaaggaacaaaaagaTATGTATATCGAAAGCATCAAGAATAAGGAGCATCAACGTTGAATCAGAAGTgttctattgttttttctccctgCGCTGCAAGCgaactataaataaaaacattttccaaataattcca
>TU120092
GTGCACCCTTCCTGGCTGCCTCTGCGTAACGTGGTAtcctgaggagaaaaggaaagttgATTTGAGAAGAGATACCGGACTGATTTCCTATTTTTCCTACTTACCTGACAGGGCTGGTGGAGACGGTGTGTTCCCCCGGTGGCCAGCTGGGCCTGAGACGGAAagcagtgcacctgtggagagacacGCTGGGGAAAAGGATAGCGGAGGGACGTGAATGGGGAAAATAACCACTGTAGTATGTGTGGTTTCACAcggcggtaggtgagggtcaatgtctttgaactgaatgcgtgccgctatcgggagccagtggagggagcggagcagtggagtagcgtgtgcgaatcggggcagagagacaccagacgagccgcagagttctggatgagctggagcggcgggtagtggatgcaggcaggccggccaggagggagttgcagtagtccaggagggagaggaccagtgactggacaagcagctgagtcgagtagtcgAAATGCATCACAAAATAAAGCAGTGTCCCCATGCTCTGAGATTTGTATGCACCTCCTCGACAATGCATGGTCAATAAGGAGTTCATATGCATATCAACTGTACCTCTGCTATCTACATTATTTGCTGAGCTTGACTGGTATTCTCCACACATGATGGAGATCATTCAATGCAAAGGTGGGGCAGCTGGAAGAAAAATTAGATCTCATGGTGGCCATGTCCAAGGTTTGTATTAAAATAGGTAGATCTATGCATGAGAATAAGTGTCTATACATATGGTAGGCAAAAGTGCCAAGAGTATGCAGGTTTTCACTTAATCAAAACACTTAATCATGTGAGTATACTGATTACATCAGCTTCAGCCAGAGATGAGGAAGTTCACATGGTGAACTTTTTGGTCAgaatgaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctcatTTTGTGTCTGATTTGGATGAGATCTTGTATAGATGTTGAGTACTTGCCTTTTGGGTTCCTGAGACCTAAGTATTGTCTACCACACTAACCATGCTCAAAACTTTTGCAAACCTTGCAGTTTGCTATCAAAACTGCAGAGTTCTTTTTTCAACCTACTGCCTAAAATGCTGAATATTGTCAGAATGGATGACACGATACATACAAGACAAGCATGTGTCCTCAAGTCCTTCTGCACCTACCACAATGAAGACCATGAGAAACTTGTGAAGGAATATATGGTGAGTTACATACACTAGATGTTCCTTCCTTCTCTAGCACTCCAATGAGTGCTTTCAGTGCTCACTGGGATGTCCAACCTTAGATTTCACTTTGTACTCTTCTTGTAATGTATGCATCTGTATTACTTCTTTACAGCTCCAACTATATGActtaatttgtactttttatgaaattgtaaatgtttgtctTACAACTGACAATTGTATGATCAGCAATTGGCATATTTAACTTTGTCTTGCCTCCAGTCTCTTGCCACACTTTGTCTAGACTCGGAAAAATGTCCAACACTTCCATGGAGCAAACTGTGATTGGAGTGTATGTCATACAGAAGGAGGGTAAGGAGCCTGGAGATGACCCACAGGACATCGGTGTCCTGATTAAAGTAAACAATGGATCTTTCCGCGGCATTGGTGCTCTGTTCCAGTTTTGCCACCAGCTTAGCAGCATCCAGTACTGAAGACCTGGATAGAGACCAGCACGGCAGCCCTTTTCATTATGATTACGAGTCTCTCCGGATTGGCGGGCTGATATTCGCAGTGGTCCTCTTCCTCATGGGAATCTTCCTCATCCTCAgCCGAAAATGTCGCTGCAAGTTCAATCAGCAACACCCAACTGGAGAGCCTGACGAGGAGGCTGGGAATCTGAGAGCATCTATCAGACGGATGTCGAGCAGGAAGCGATAAGCAGTGGACAGGCTTCAGGTGTCCCCTGAGATGCCAACCAGTGCCACTATGATGCCGCGTCACACAGGGCAGCACACAGCACTGTTTCTGTTTGCAATCGTAGCTAGTTGTGCGCTGGAAGTCAGTTTTGAATGCGCCAACCTAACTCATCTGCTTCTGCTACTTTTTCATCTTTGactgtctgtctatctcttgctctcatatttttttctatacaaaaggaacaaaaagaTATGTATATCGAAAGCATCAAGAATAAGGAGCATCAACGTTGAATCAGAAGTgttctattgttttttctccctgCGCTGCAAGCgaactataaataaaaacattttccaaataattcca
>TU120133
ATTAAGCCCAACCATTAAAGGTCCTAAAACACAGAGCCCCTGTGCACCAGCTGTGAGAGGAGAGACAGCGAAGAATAATAGAGCTTGAAGCAAGCGCAACACCCCATACACTCATGTATGTGGATCGGGCCGGCTTCAACCTTTCCAAAGGAGACGAGGGAGGAACCTCATTGgGATGTTGTCCTGAAATTGCTCCAGTATGAGGCCTCTACCAACGTGGCCGACATCAAAGGCTGTTTCCCACTTCACCTGGCCACCTGGAAGGGAGATGTGGAGATAGTGAAGATCCTCATTCATCACGGCCCCTCTCACTGCAGAGTCATTGAACAGgtgcactaCGCTCCGCCTCAGGCCCAGCTGACTACAGGGGGGACACACCGTCTCTACCAGCCCTGCAAGATGAGTAGAAATAGTACAAAATCAGTCCAGtatctatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaaaaaaatccagaaaaatgcatttcaaaaaagttataaattggaGTGGTCCAGGAGCCAGGAAATGTGTGCAGCAATCAACCAAAACTCATTCAAAACCAGAGAGAGTTTTCCCATAGAACATCAGAGTACATATCCTGCTATGAACAATTCCCCTGTTCCAATCAGCGGAGCTGGGGGGTTGCTGTGGGCCCTTAATTTGCGGCTGTGGGCCCTAAGCAGTCGCTTATGTCCCTTATGCCTAGAAACGACTGTACACtgtgcactgtatttaaatgtcttccACATTGTTACATTCGTTATTCATTATAGCATCAAATATGAAGCATTTATGATGATGTGCCACTAAttggtttttttgtttttttgtttttttgagtgtgcctgtggcagggagggggttaattgtccctccctgcctgctcatggactgcaggtggccGGGGTGATTGAtaaattaaggtcaatcaaccccagccacctgctatataaggaggcctcagcctcccATTAGGTGTTGGAGGTGTTGGAGGAGTTGGGTAGTTGGGTGTGGAAGGAAAACGTTACGTTTTTTCACAGTGAAGACCAGGTCCAGcctgtgtatttttctttgagttttgtgtatctgtttgtttgGCCATCgtgccagtttattttgtttatttaataaagcctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015211 False 972 mRNA 0.53 13 4986808 5083187
TU120088 False 953 TUCP 0.46 9 4985572 5005512
TU120089 False 900 lncRNA 0.46 8 4985572 5005512
TU120090 False 950 TUCP 0.46 9 4985572 5005512
TU120091 False 980 TUCP 0.47 10 4985572 5005512
TU120092 True 2255 lncRNA 0.46 11 4985572 5014397
TU120133 False 1234 TUCP 0.45 4 5054901 5073806

Neighbor

gene id symbol gene type direction distance location
AMCG00015208 NA coding downstream 112852 4871054 ~ 4872720 (-)
AMCG00015209 NA coding downstream 114543 4870014 ~ 4871029 (-)
AMCG00015202 LOC106605622 coding downstream 306521 4670704 ~ 4679051 (-)
AMCG00015199 NA coding downstream 355350 4619364 ~ 4630222 (-)
AMCG00015195 NA coding downstream 532625 4436545 ~ 4452947 (-)
AMCG00015217 NA coding upstream 6647 5089834 ~ 5113520 (-)
AMCG00015216 NA coding upstream 36011 5119198 ~ 5125146 (-)
AMCG00015220 NA coding upstream 80220 5163407 ~ 5166705 (-)
AMCG00015219 NA coding upstream 114900 5198087 ~ 5213200 (-)
AMCG00015227 NA coding upstream 151945 5235132 ~ 5241035 (-)
G96300 NA non-coding downstream 74067 4894754 ~ 4911505 (-)
G96271 NA non-coding downstream 96251 4882069 ~ 4889321 (-)
G96208 NA non-coding downstream 316286 4668903 ~ 4669286 (-)
G96148 NA non-coding downstream 592592 4390840 ~ 4392980 (-)
G96136 NA non-coding downstream 641503 4343868 ~ 4344069 (-)
G96375 NA non-coding upstream 73600 5156787 ~ 5157140 (-)
G96385 NA non-coding upstream 110636 5193823 ~ 5194138 (-)
G96452 NA non-coding upstream 314907 5398094 ~ 5559599 (-)
G96454 NA non-coding upstream 325177 5408364 ~ 5451534 (-)
G96458 NA non-coding upstream 343692 5426879 ~ 5463856 (-)
AMCG00015210 NA other downstream 9222 4968050 ~ 4976350 (-)
AMCG00015203 NA other downstream 182668 4778393 ~ 4802904 (-)
G96191 NA other downstream 366308 4617711 ~ 4619264 (-)
G96094 NA other downstream 805131 4174879 ~ 4180441 (-)
AMCG00015180 NA other downstream 861609 4110319 ~ 4123963 (-)
AMCG00015230 NA other upstream 311199 5394386 ~ 5463028 (-)
AMCG00015244 NA other upstream 670406 5753593 ~ 5757109 (-)
AMCG00015257 NA other upstream 942181 6025368 ~ 6072125 (-)
AMCG00015256 NA other upstream 966290 6049477 ~ 6064159 (-)
AMCG00015267 NA other upstream 1285567 6368754 ~ 6384620 (-)

Expression


Co-expression Network