AMCG00015215


Basic Information

Item Value
gene id AMCG00015215
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5084574 ~ 5119401 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015215
TTGCGCTGGAGTGGGTCATTTCGTTTAACCCTCAGAGTATCTGCGCATTGGAAGGATCATCGGTGGTAATGGGATGTCATTACTCATACCCCAGGGGCCAAGTAACCAATGCATTCTGGTTTGTCAattcactgaaaaacaaacttatCGACCTCCCGGCATACAAGGGCCGTACAGTATATCTGGGGAATAAAGTCAACTGTACTAACATGCTGAGATATCTGACACAGGACGACGGTGGAGTTTACAAATTTAGGTTTACGGTAAATAATCCAGAAAATGCATGGATCGGTAAAGATCAAGTGGATCTTTCAATCAcagaagcagagtccctgaccctGTCCTGTCTCACCAGCTGCAAATTGAGCGACCCTGCTTTCATCTGGTACAGGAACGGCCAGCCCCTCAACACACAGACCCCTGCTGACAAACTGACCATTGACGGGGTCAGCTACCAACAGCATGGGAACTACTCCTGCGCGGCAAGAGGTTATGACAATCTGCCCTCCCCTCCGCAGGCCCTCAGCAACAATGCAAATGACTTGTATGCCAATATAGTTAGGCCAGTCCCCCGAGGACCAAAGCAGGAACCAGTGAAGGAAGAGAAGGACAAGGAGGACAAAGAGGATGATGGTGGCCTGTACTACTCCACGCTCCAGCATCTCAGCTCTGGCACTGCCAACAGCCCAGCTCTGGGGCAGATGGCAGCAGAAACCTCAGTTATCTACAGCACGagtGCCCTGTCTGACCCACACAGTGACACCTACACAGCTCTGGATATAAGGGCAGTGTCTGCAGAGTATGACACTCTGAAGTTTTCTCAGCTCAGTGTCAGTGATacctacactgcactgcacagacCAGCTCAGCCCTCAGAATACGAGACTATCCAGAGATCAGAGAAGTTCATCTTCAGCAGGCCGACAGTCCTCTGTCTTCCGAGGGATCCCAACGCCACTGGACCTAAAAGGTCTAGATCATACGTGTCACTGgagtgtgagagagtggaGGAGGCTTCAGGAAAGGAAGACAGGGCAGAGGAAGAGGGCGATGGGGGCGAGAGACGCCAGCAGGAGGAAGAGACTCTGTCCAGTGTGCTTGGCATTGTTGCACAGGTATCCCTCACAGCAGCTGAATCCCAAGCCGGTGCTGTGGAGAATCTCCTGTGGTGGCAGGGTGCTGCAGATGTTGCTGGTGGCACATCCCTTCACGACTATGGTTTGGCTACCAACAGTAAC
>TU120152
AGAAGAAGGGACGAGTCGAGTCGAGTCTTAAAACTATCTTTGCAAGAACTCacatctttgtattttgttttatcttttgtatgtgttttgtatacCCCCTGCCTGCTGCTATCCCTGCTGTAACTGGATttgaactgttttattttaataacttaagCTTTCCATGGACACTGGAGGTACTTTTTGGACTGTGAGTTTGGAGACCACGCCTATATCTGGATACAAGCCAACTCGACAGACCTTGCTCTAGCAGTGGACTGGACAATCTTTTTGAAGTTTTTATTCTTGCTGCAGAGACTGTATTTCTTTTGGACAGTGTTGtggattttaactttttattttgttttgcggTGGACCCTGGGTACTCTGCTCTGTGTCGGTATTCAGGGCTGATTGAACCCCATCCACTGTGATACACATATGAGagtGCCCTGTCTGACCCACACAGTGACACCTACACAGCTCTGGATATAAGGGCAGTGTCTGCAGAGTATGACACTCTGAAGTTTTCTCAGCTCAGTGTCAGTGATacctacactgcactgcacagacCAGCTCAGCCCTCAGAATACGAGACTATCCAGAGATCAGAGAAGTGAGGGGGAATGGACACACCAGGGTACAAGATGGAAAATTGATccagaacaagaaaaaaaaacaagaaagcgcatgaattagatttttttaatgttaacatGTTAAGCTGAAGACTTGGAGAACCTATGCTCATAcaggaaatgtacatttttgctATACTATATAATATTTGATCTATTTTAATGGGCACTTTATTTTTCTACCTGTAGCGTAACAGGGATTTGTAATTCTTGAGGGTCTGAAATATGTTTGCTCATATACTATACACAATGCATATGCTTTCTCTTAGACATCAAACTTGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015215 True 1238 mRNA 0.52 9 5084574 5119401
TU120152 False 901 lncRNA 0.40 4 5101088 5104581

Neighbor

gene id symbol gene type direction distance location
AMCG00015218 NA coding upstream 19331 5064320 ~ 5065243 (+)
AMCG00015213 NA coding upstream 37386 5042501 ~ 5047188 (+)
AMCG00015207 NA coding upstream 126705 4952437 ~ 4957869 (+)
AMCG00015205 NA coding upstream 222758 4846954 ~ 4861816 (+)
AMCG00015204 NA coding upstream 246204 4806896 ~ 4838370 (+)
AMCG00015214 NA coding downstream 9940 5129341 ~ 5136836 (+)
AMCG00015221 NA coding downstream 200157 5319558 ~ 5351935 (+)
AMCG00015223 NA coding downstream 274979 5394380 ~ 5398379 (+)
AMCG00015226 NA coding downstream 307503 5426904 ~ 5434516 (+)
AMCG00015222 NA coding downstream 326583 5445984 ~ 5446945 (+)
G96326 NA non-coding upstream 48303 5036038 ~ 5036271 (+)
G96205 NA non-coding upstream 414399 4669472 ~ 4670175 (+)
G96204 NA non-coding upstream 415184 4668893 ~ 4669390 (+)
G96203 NA non-coding upstream 415790 4668322 ~ 4668784 (+)
G96083 NA non-coding upstream 691105 4388148 ~ 4393469 (+)
G96384 NA non-coding downstream 74571 5193972 ~ 5194179 (+)
G96424 NA non-coding downstream 338432 5457833 ~ 5459048 (+)
G96512 NA non-coding downstream 632767 5752168 ~ 5753255 (+)
G96513 NA non-coding downstream 635682 5755083 ~ 5755350 (+)
G96543 NA non-coding downstream 745643 5865044 ~ 5919123 (+)
AMCG00015212 NA other upstream 6671 5068047 ~ 5077903 (+)
G96317 LOC100846954,LOC107575789 other upstream 62522 5021366 ~ 5022052 (+)
G96264 NA other upstream 204678 4876121 ~ 4879896 (+)
AMCG00015197 NA other upstream 417516 4583697 ~ 4667058 (+)
G96030 NA other upstream 984434 4089201 ~ 4100140 (+)
G96415 NA other downstream 269536 5388937 ~ 5391723 (+)
G96420 NA other downstream 307478 5426879 ~ 5465434 (+)
AMCG00015277 NA other downstream 1566950 6686351 ~ 6691799 (+)
AMCG00015293 NA other downstream 1878196 6997597 ~ 7080788 (+)
G97006 NA other downstream 2295968 7415369 ~ 7415762 (+)

Expression


Co-expression Network