AMCG00015228


Basic Information

Item Value
gene id AMCG00015228
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5379521 ~ 5388876 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015228
ATGCCTGGTAAGACAGTGACCATCAGCCTAGCCCCTTATGAAACCTACCAGCTGAAGAGCCGCTGTACATTCTCAGGAACCCGTGTCAGAGCCACAAGCCCTGTGGCTGTCCTGGCAGGGCACCAGTGCTCTCTTCAGTCCAAGTACTGCAACCACATCTATGAGCAGCTGGTCCCACTGCAGAGTGGCGACCGAAGACAATACCATGTAGGGGATGTGTGGGACGTTTGCATGGGGGATGCCACCCCGCTGGCCATTGACAGCAACAAGAAGTTGATGGTGATGTACTACAGCAACGGGGACCAGAACGACCCCTTCCTGACCAACGTCATCCCCACTGAGGGGTTCTCCAACAAGTGGTTTGTGGACACTCAGCAGTCGTTCACGAGCAGCGCTGTCCTCATCTCCGAGGCTGATGGTGTCCGGAGCATCCTGCTGAACAACAGGAAGCTTTGCAGTCGAATCAGGTGGAAAAATATAGGAGTTGGATCCAAATACGTGTGGACCACAATTGACCTAGGGTCAGATCAAAATCACTTTGCGCTCACCAGTGACTCCATGCTGGGGGTATATGTCCACGGGTTCAAATCTTACGATGCCTATGGTACCACTGGAGTGTGCTATTCAGTGAgtgtggaggaggggaggggggcattAGCAAAGATAGATGGCCAAACTAGTGGCTTTGGCAGAGCAAATAGGAAGGCTGAGTTTGGAAATCTGACAGTTTTCAGAGTGAACAAATCAATGGCAACCaagatttacatttataatatgatGCAAGGGACTGTTTTTTCTCACCATTTCCAGGTTAACAGCATCAGCACACACCTCCCGGTCACCTTGAGCGATGGAAAGCTGCGAGTGGTGCGCAGCGGGGGGTTTGCCTTGCTGCAGACAGACTTTGACCTGCAGGTTATGTACGACTGGAACATGGCACTCTTCATCATGGCACCAAGCAGCTACTTCCGCTCACTCGGTGGTTTATGTGGCAACTACAATGGCAACCGAGAGGATGACTTCTCCACCCCCAAAGGGGCCCTGGCCTCCTCAGTGCTGGACTTTGCCAGCAGCTGGAAAGCAGAGGACAAGGATGTCTTCTGCCACCATGACTGCAAGGGCCAGTGCCCCAGCTGCTCCATGGTCTTACAAGAAAAGTACCGTGGGGAGGCGTTCTGTGGTCTTATGGCCAAGACGGACGGCCCCTTCGCTGGCTGCCACCAGATTCTAGACCCCGGCCTGTTCGTGGACAACTGTGTGTATGACGTATGCATCAACAAGGGCTACAAAAAGTTCTTCTGTGAAGCTATTGAGAGCTATGCAGGTTCCTGCCAGAGGGAAGGAGCCAAAGTGGCCAACAACTGGCGAGTGCTGGCATCCTGCCCACTGTACTGCCCCGAGTACAGCCACTACGAGAATTGCGGCAATGCCTGCCCGGCTTCCTGTAGTGACATAGATGCCCCTTCCAAGTGTAAAATGCCCTGTGCGGAGACATGCCAGTGTAACCCCGACTATGTGCTGAGTGGGACTAAGTGTGTGCCCAAGGAGAGCTGTGGTTGCACCCTTGAGGGCCAGTACTATATGTCCGGGCAGGAGTTCTGGGCAGATGACAAATGCAACAAGAAATGCACATGCCAGGCCAAAACCGGTAAAGTGGAGTGTGTCAGCATGACATGCAAGAACTCTGAAGTGTGTGACCTGCGAAAGGGGATCAGGGGTTGTTACCCCGCCTCCTACGGCACCTGTGTTGCCACAGGGGACCCACACTACCGCACTTTTGATGGCAAGGCCTTCGACTTCCAGGGAACTTGCACCTACCAGATGTCCAAATTGTGCAACCCCACCCCGGGCCTGGTACCCTACGAAGTGCACGTACAGAACGAGAACCGAGGCCGGAACAAGGCTGTCTCCTTCACCAAGATGGTCAAGATATCCATCTATGGCCATGAGATCATCATGAGCAAGGACAACAGTGGCAAAGTTCTGttcaacaacCTGTTTGTCAGCCTGCCCTTCTACTTTGAGGATAACAAGGTGTCCATCTACCGCAGTGGATTACAGGGGGTTCTGAAAACAGACTTCGGCCTGACAGTGAGTTTCAACTGGGTGAGCTACGTGTCTATCTCCCTGCCCAGCACGTACTCTGGCTCCGTCTGTGGGCTCTGTGGCAACTGGAACGGTaaccaaaatgatgacatgCTCGCCCCAGACAAGTCCTTGAGCAGCACTCCTGCCATCTTTGGGGAAAGCTGGAAAGTGAAAGATGTGCCGGGCTGCTCCAGTGACTGCAAAGGCACTTGTCCCATCTGTGACCTCAAGCTAAGGGGCCAGTATGAGGGGAAAGCATTGTGTGGGATAATCAGCAACCCTGACGGTCCCTTCAAGGGCTGTCACGGCAAAGTTGACCCTAAGCTCCACTTTGACAACTGCCTGTTCGACTTGTGTCTGTACCGTGGCCACGTCTCGGCACTCTGTGCAGCCCTCACTGCCTACATGGCGGTGTGCCATGACGCCAGGGCTGAGGTCGCTATTTGGAGGAGTGACACATTCTGCCCTGCCTCCTGCAAGCAGAACAGCCACTATGAAGTGAATGCAACTGGCTGCCCTGTGACCTGCCGTGACCTGTCAGAGGCTCAGAGCTGTGACAGCACCCTCTCCAAGGAGGGCTGCGTGTGCAACGATGGATTTGTGCTGAGTGACAGCAACTGTGTGCCTGTGGCAGAGTGCGGCTGCGTCTGGGGTAGCCAGTACTATAAGACAGATGAGGTCTTCTTCCCCATGGGCCTGTGCTTGCAGCGCTGTGTGTGCCAAGAAGGTGGGAAGGTGGAGTGCGATGATAGCTTCAGCTGCGGCCCCAACGAGAAATGCCAGCTGAAAGACGGGATTCAAGGCTGCCACCCTATGGGCACAGGTTCCTGCTGGATCTCTGGAAACAGCCGCTATCGCTCGTTCGATGGGCGCAGCTTCAGTCTGCGTGGAAACTGCACGTACATGGTGGCCAGTGTGACTGAAGGGAACAACAAACTCATACCTTTCAAAATAATGGTGAACCAGGAGACCGAACTGGGCATCACTGTGACTAGGAGTTTTATGCTGGAGGTCTATGGGTATAGACTGGCCATGCTCCCTGGATATGTTTGGCAGATCAGGGTGGACGGCATCAACACCAACCTACCTGCAATGCTGGAAGATGGGAAAGTGTCAGTCTACCAGAGCGGGATCCACATCATTCTGGAGACGGACTTTGGGCTAAGGGTGAGTTACGACAGCAGCTCCAATACCTTTGTCAGCATCCCCTCCACCTACAAGGGCATGCTGGGTGGCCTCTGCGGCAACTACAATGACAACCAAGGAGATGACTTCGCCCTGCCTGATGGCAAGCAGACTGCTGACGTTGACACTTTCGCAGCTGGCTGGGGGGTGTTGGTCAGCTCGGTGATGTGCCAGACGGGCTGTGGCTCCCAGTGCCCGGCCTCCAACCAGCAGAAAAAGCCTGATGCAGAGAGTGATGTGGTCTGCGGCAAGCTGATATCCAAGAGTGGGCCTTTCTCTGGGTGTCACGCCACTGTGCTGCCCCGTGAATATTTCGAGGAGTGCGTGCAGGAGATGATCACAGAAGGTGGCAATGAAGAGGTCCTGTGCAGTCACCTCCAGCATTATGTGGCCGCCTGCCAAGCTGCAGGGGCCACCGTCAGCAGCTGGAGGACAGAGCAGTTGTGTCCTGTGATGTGCCCCATCAACAGCCACTATGAACTGTGTGCAGACACCTGCACGTCCACCTGTGCTTCTCTCAGCTTGTCCATCAAGTGCCGGAATTGCCAGGAAGGGTGCCAGTGCAATGAAGGCTTTGTGTCCAATGGAGATGCCTGCGTTCCCCTGGAGAGTTGTGGCTGCACGGTGAACGGCATATACTATAAGTCCGGGGAAAATGTGGTTCAGAATGACTGCAGCCAGGCTTGTAGCTGTAAGGCCGGAGTCTTCAGCTGCTCACCCAATGCATGCAGCACTGATGAGATCTGTGAAATCAGAGATGGGGCCATGGGTTGTTACAGCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015228 True 4056 mRNA 0.54 10 5379521 5388876

Neighbor

gene id symbol gene type direction distance location
AMCG00015231 NA coding downstream 19592 5358559 ~ 5359929 (-)
AMCG00015227 NA coding downstream 138486 5235132 ~ 5241035 (-)
AMCG00015219 NA coding downstream 166321 5198087 ~ 5213200 (-)
AMCG00015220 NA coding downstream 212816 5163407 ~ 5166705 (-)
AMCG00015216 NA coding downstream 254375 5119198 ~ 5125146 (-)
AMCG00015232 NA coding upstream 21 5388897 ~ 5391016 (-)
AMCG00015229 NA coding upstream 2142 5391018 ~ 5391341 (-)
AMCG00015233 NA coding upstream 120635 5509511 ~ 5514825 (-)
AMCG00015238 NA coding upstream 148469 5537345 ~ 5537795 (-)
AMCG00015239 NA coding upstream 148927 5537803 ~ 5540056 (-)
G96385 NA non-coding downstream 185383 5193823 ~ 5194138 (-)
G96375 NA non-coding downstream 222381 5156787 ~ 5157140 (-)
G96329 NA non-coding downstream 341030 5038290 ~ 5038491 (-)
G96318 LOC100846954 non-coding downstream 357456 5021260 ~ 5022065 (-)
G96314 NA non-coding downstream 362912 5016386 ~ 5016609 (-)
G96452 NA non-coding upstream 9218 5398094 ~ 5559599 (-)
G96454 NA non-coding upstream 19488 5408364 ~ 5451534 (-)
G96458 NA non-coding upstream 38003 5426879 ~ 5463856 (-)
G96459 NA non-coding upstream 38860 5427736 ~ 5464667 (-)
G96462 NA non-coding upstream 43729 5432605 ~ 5465324 (-)
AMCG00015211 NA other downstream 296334 4985572 ~ 5083187 (-)
AMCG00015210 NA other downstream 403171 4968050 ~ 4976350 (-)
AMCG00015203 NA other downstream 576617 4778393 ~ 4802904 (-)
G96191 NA other downstream 760257 4617711 ~ 4619264 (-)
G96094 NA other downstream 1199080 4174879 ~ 4180441 (-)
AMCG00015230 NA other upstream 5510 5394386 ~ 5463028 (-)
AMCG00015244 NA other upstream 364717 5753593 ~ 5757109 (-)
AMCG00015257 NA other upstream 636492 6025368 ~ 6072125 (-)
AMCG00015256 NA other upstream 660601 6049477 ~ 6064159 (-)
AMCG00015267 NA other upstream 979878 6368754 ~ 6384620 (-)

Expression


Co-expression Network