AMCG00015259


Basic Information

Item Value
gene id AMCG00015259
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6084877 ~ 6097018 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015259
ATGGCAGGCAGCTCTGGAGTGCGCTGTCTCACCCCTGCCAAGATGGCAGCCATCACTCTGAgtgtcctgctgctgctgggggggATCGGAGCTGCTGTATGGGCTTTAGtAACTTTTTTGATCAAGACTGAAGACCCAGGGCTATACGATGtCCAGATCAACTCTGCAGATCTCCGGCTCTCTGTGTTTGATCGCTCAGAGGGGCGTTGGAAGTTTGTATGCTCCTCCAGCTCGGACGATTCCATCGCTAAAATCAGCTGTGAAGAGATGGGCTTTGTCAGGATGTTGTCATTCTCTGTCAACCCTGTTAACCCCGCTAGTGGCAACACTTCCGAGGGCTTCTTCTGTGTGGATGAAAAGCAGCTTGATAACTGTGAGAGTGGCCGGGTCCTCAGTGTCAACTGCCAAGACTGCGGGCGGAGGAAGCTGACGGTGGATCGGATTGTGGGCGGTGAGGACGCCAGCCTGGGGAAGTGGCCATGGCAGGTCAGCCTGCGCTACGATGGTAGTCACCTCTGTGGAGGCTCAATTATCTCTGACCGCTGGATCATCACAGCCGCCCACTGCTTCCCTGAgAGAAACCACTTCCTCAACAGGTGGCAGGTGTACATGGGCTCCATCTACCAGAGCTCTCCCGGGCAGTTCCGCTCTGTCCAGACAGTGGTGTACCACTCGGGGTATCAGCCGTTCATCGACCCCAACGTCGACGACAATAGCAACGACATCGCTGTCCTGGCCCTCGCCGCACCCCTGCGGTTTTCAGACTTCATTCAGCCAGTATGTCTCCCAGCTCTCACCCAGTCCCTGGTTGATGGAAAGGTGTGCACTGTCACTGGCTGGGGCAACCTCAAATACTACGGCCAACCCTCTGATGTCCTCCAGGAGGCCAGCATCCCTGTGATCAGTGATGGCACCTGCAACGGGGAGGACTACTACACTGGCCAGATCAGCAGCAGCATGTTCTGTGCGGGCTACCCCGAGGGGGGCATCGATGCCTGCCAGGGCGACAGCGGGGGACCATTTGTGTGTGAGGATTCCATTTCCAAGACTAGCCGCTGGCGCCTGTGCGGGGTGGTGAGCTGGGGCACTGGCTGTGCCCTGCCCCAAAAACCTGGGGTCTACACAAAGGTTACCCACTTCCTGCCCTGGATCTCGAGTGCCATGAGGAACTATGACCAGATGCATGGCGTGTTCAGTATGGGCTAGCCCCTCAACCACAGGGCAACTCTCCCCGTATTGACGGCAGGGACTCAAACCACAGAAATCtcagcccctctccctctcccctttaACCCTTTGCTGCTCATCGGCTAATGGACAATCAGAGGAAACGGATGGGGTCTGAGAATATGGGTACACacgtctacacacacacacctattgAGCAGGAAAAGGTTAAATGAAGCATTTTGAATGGGGACCTCCTCCTGTGTCCATTTCCATTCAatcttcttattttatttttttaattttaatattgccATAATTGAGTCCTGCTCCACATCCTGTATTTGAAGTGCCTTGGACCTAGTGGGGGTTAATGCTGGATAATTGTgaaaagacaaaatgtaaagGAAGGGAGTCATGTAAAGGTGACATAAGTGTCCTGCCCCCGGTCCCTTTTTAAATGGTAAGGCTCTGTATAGCAAAATGCTCAGTCAGGTGTGgagttgtgtgttttgtctgcacttattatattttatctttatgcTCCAAGTATGTATTCATGAGTGACTGAATGTTGTGTGAAGACTATCGAAGGCCACACTAATTCAGCAGACATCCGAAAGTGCTTGGGGGAGGGTAATTAGTGTTGTACCAAACTGAAAAGATGTTTGATTGCTTCAAGATTTTGACCTGGTCTCACACTAAAATAACTCCCCATTTCATTTTGCCTTCCATGTTGagctgtttttgatttgttgttttgttggggAGGAGGGGCAGTTTCAGCTCtgtgttgcatttcatttgcacCTGGTTCACTTAAGTCTATCAGAGcaccaacattttaaatactacaaGAAACTAAATCTTGTTACAAAACACGCAGGTAAATGACAGCAAAAGTGCAGACAAAATACACCTCTGCTTTAAATTATTGCTCAAAGTTGCTCCCTGCTTGGTTTTTGGggggtttattttgtttgtttgtttttttgtttgtttttaataattattatgtaaatcACATGGTATtgttatgaaaatgtgtttgctaATTGGGGAGATTGTGCCTTGTCTTGAATTGTGTCAAGTTCAGATATATATGTTGGTGTGGagatgtctgtgtttgtgtttgtgcgaATGTGTGAGAAAGGGGGCCAAATGTTGGTGCTTGAAGGTGCTTGAATGATTGTATTGTCTTCAGTTtaggaacaaaaacacatacaaaatatcaGATTCCCTCAGCACCTTCTCCAGTAATTTCTCAAGCTAGTTTTTCATGTGCAGCACTAAACCCAAACCAATATTCCAATGCCCTGAATTTCATGGTTACAAAATCCAATAAACTATTTCTGTAATTTATATCTGTTTaatatctctatatattttttactattCTCCCACTGTAGCTAGAATAAATGGTACATTTCCATTGCTTAAAAGGGTTGAGAGTTGAACTGCACATGATTAACCCTTGAGTTAATGTGACCAGTTAAAAACTCTGTAGAAGATAGTAGTGAATGAAGACAAGCAACACAGGCTAGGGAGTGAATCTTGTCTCATGCTTGTAAAGTTTCTTTCCCCTACAGACtagtaattaagtaaatgttttgctttgattttgttACACTCTCAAAACTGACCATAACAGAGCTCTGCAGGTTCAAGATCCAAACGGCAGGTTCTTCCTGTtgtgtttcaatatttaattgaaacccTTCTTCCGATTCATCCATTGCTGATGAATGACATCTATCACTAAGCAATATCAAATCCTCTGCTGCAAGAATCTTTGCCTTCAAGGTCCCAGAGTTTTGAAATATGATGAGTTGTATAAGTAAATCTCATTGTCTCCCATTACTGTAGCAACAGAGAGAATGGAATGTCCTTTCTGTAATGGGAGGGTGATTAGTCTATCAATAACATCCAGTGTTTGGTTATCATATTTTTGACAGTAAATGTTGTACTTTGGCCGCCTTTGCTTACTATTACTgttgttatcattattagttATAATGACtatgaaatgaaaacctgaaacaATTATTCATCTGGGCAATCGTGGATGTAGgaaatgaattattttaatatgagaaatgattgttttaaagcagTGGCCTATACCTcctgcattttcttgtttagttttttgccCTCATTACTCACTGCATGGATTGCTGTTATATGTCCACACTGAGTCCTGGTAGTTTTATTCTGCTTCCTCAAAGGGGAACTGATAATGAATGACAGGGCTGTTACACCTAAACTGTGCAAAACCAATGACCTTCCCCTTGGCACTTTCTGAAACAGCACTGAAtggttgttttgaaggcaataGCAATTCACAAAGCacaacaaagtgaaaaatgaaaaaaaagacacaaaaaaaaaggaaaatgcaagcGGTCTAAACCACTCCTTTGAATCGCAAGTTTTGCACACTGGTTCTGTAGTCAATAAACCTGTATTATTCTTTCATCTTTATTTCCATGTACATATTTTAGGATGGTAGTGGACtctttctttttggtttgattttataCTATTTTTGCTCCATCTGCATttctagaaagaaaacaaaaccgaaaaCCACTAATATCACTTCAGATTGTAAACTTCATCCCCTAGTTCTAACCCTAATTTAAATTGTGGACGATCAACAGTCCTGTCCTTTTAATCCTGATGCAGTCAGGTCATAATTTGAACAGGTCATTTCCAAACTGGGCGGAAGTCCTATCTGGTATATATGCACTTTGCTTTTGCTCATTAACTCATACTTTTGCTcatcaacatataaaataaatatatggtttacaggctaaaatgtattttaaatatttcctgtatattttaaatatgcaaaatgcaagaaataaaaacaaatatctgttcAATATGGGACCAATAAGCCCCAGGAGCCGATCAAGGAGGTGCTGGCCATTGCTAAGCTCTGCTCCTCCTTTTCAAGCTCAAGATTATAGAAGCACAGAAATGACCATGAGAAAACACTCTACTTTTAAAATTTGCTTAGGTTGGATTTGATGCCTGTTTATTATGTTGAGCTGACCAGGATAGTGGGGCACTAATCTGTCTACTGCATTTGACGCTGACTGACCACACATGACCTGATGTGGTAAAATGATGAGAGACATCAGAAGCAACTGGTCAACCTCACCCTCCCATGCCCTTAATGTGTTTCATGTCCTCTGCCTGCAGGCGTCGCAGAAGTGCTCACATGCCACTTAAGCaattaaaactacaaataaattGATGATAGTTCAGCTGCTATCAAACCCACAAGATCCTGTTGGCCTTGAGGAGTAGGGGTGAATAACTGGTCCTTCAGCTCTAGTCCAGGAtagttctgtttttcattcttgCTCTTAGTTACACATTTGCATCGACTATTTGCTTAAGTCAGCATTAACTTGTTCTTGAAGATATTTCTAAAACCTGACAGACCGGGGATCTCCTAGACTAAGGTTAGAGACCCGAGCCCTGAAGTGCTACTAGGTCTTcagtttttgttccagctgagatTCCTTAAATGCTTCCCTGGACTATcttctattgttttaaaagctgaCAATCATTTAGAAGGTCCAATCAGACAATTTTAGTTTTCCAATTAAGtttacaattaagtaattcagaaCACAAACCTGCAGACAGGGTtcagaaccactggtctagatTTTAAAGTGAAGTGTAGACAAGCTGGATTGATGTTACATAGTGTTTTAAAGAGTTCTTGGggtggaaaaaaatgataaaaattaACCAAAAAGAAATCCTCA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K08665 HPN; hepsin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015259 True 4964 mRNA 0.43 11 6084877 6097018

Neighbor

gene id symbol gene type direction distance location
AMCG00015260 NA coding downstream 1386 6078223 ~ 6083491 (-)
AMCG00015258 NA coding downstream 76633 5975211 ~ 6008244 (-)
AMCG00015251 NA coding downstream 170940 5900594 ~ 5913937 (-)
AMCG00015247 NA coding downstream 204687 5865044 ~ 5880190 (-)
AMCG00015250 NA coding downstream 235448 5845176 ~ 5849429 (-)
AMCG00015261 NA coding upstream 27082 6124100 ~ 6144724 (-)
AMCG00015270 dyrk1b,LOC106605641,LOC106578455,LOC107685988,LOC107737818,LOC107666783 coding upstream 333600 6430618 ~ 6440642 (-)
AMCG00015272 fbl,LOC107719117,LOC107666874,LOC102785674,LOC107737817 coding upstream 391424 6488442 ~ 6501219 (-)
AMCG00015273 LOC108437392,LOC105891768,LOC107719116,LOC107737835,LOC108256255,LOC107666762 coding upstream 418348 6515366 ~ 6525807 (-)
AMCG00015275 NA coding upstream 493175 6590193 ~ 6591000 (-)
G96609 NA non-coding downstream 52750 5927459 ~ 6032127 (-)
G96532 NA non-coding downstream 292263 5792403 ~ 5792614 (-)
G96531 NA non-coding downstream 296030 5786397 ~ 5788847 (-)
G96479 NA non-coding downstream 527372 5557251 ~ 5557505 (-)
G96462 NA non-coding downstream 619553 5432605 ~ 5465324 (-)
G96642 NA non-coding upstream 21603 6118621 ~ 6119653 (-)
G96643 NA non-coding upstream 23636 6120654 ~ 6121002 (-)
G96650 NA non-coding upstream 60085 6157103 ~ 6223629 (-)
G96653 NA non-coding upstream 131496 6228514 ~ 6228776 (-)
G96696 NA non-coding upstream 258002 6355020 ~ 6362409 (-)
AMCG00015257 NA other downstream 12752 6025368 ~ 6072125 (-)
AMCG00015256 NA other downstream 20718 6049477 ~ 6064159 (-)
AMCG00015244 NA other downstream 327768 5753593 ~ 5757109 (-)
AMCG00015230 NA other downstream 621849 5394386 ~ 5463028 (-)
AMCG00015211 NA other downstream 1001690 4985572 ~ 5083187 (-)
AMCG00015267 NA other upstream 271736 6368754 ~ 6384620 (-)
AMCG00015271 NA other upstream 313629 6410647 ~ 6419481 (-)
G96766 NA other upstream 601839 6698857 ~ 6700357 (-)
AMCG00015283 NA other upstream 773444 6870462 ~ 6877734 (-)
AMCG00015285 NA other upstream 794217 6891235 ~ 6896427 (-)

Expression


Co-expression Network