AMCG00015261


Basic Information

Item Value
gene id AMCG00015261
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6124100 ~ 6144724 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015261
ATGAATGAGGTGCGGCTGACCAAAGCCATGGCAAGCAACACAGTGTCCATGCCAAGCCCCGTGTGCCTGATCGAGAACGGATCGGACAGCCAGCTCCACGTTAATCCACTGGCGCTTCAAATCCTGGACGGGATCCGCCAGCCGGTGGTGGCCGTGTCTGTGGTTGGAATGTACCGCACTGGAAAATCCTACCTCATGAACAAGCTGGCGGGGCAGAGAGAGGGATTTGCCCTGGGCTCCACCATCCAGTCCCACACCAAGGGCATCTGGATGTGGTGTGTCCCTCACCCCACTAAGCCTGACCTGACCCTGGTGCTGCTAGACACCGAGGGGCTGGGGGACGTGGAGAAGGGCGACCAAAAGAATGACTGCTGGATTTTCGCCCTGGCTATCCTTCTGAGCAGCACGCTGATCTACAACAGCAAGGGGACCATCGATAACAATGCCCTGGAGAATCTGCAATATGTGACAGAGCTGACTGACCTGATCAAGGTGAAATCTCCAGGAAAGGCCAAGCCAGGccaagaggaggaggatgaggaagaggacACTCAATATGTGCGCTTCTTCCCCATTTTTGTGTGGGCAGTGCGGGACTTCACCCTGGAGCTGAAGATTGATGGGAGGTCGGTGAGCGAGGACCAGTATCTGGAACATGCTCTCAGCCTCAAGAAAGCTTTCATGAAGAGGTCCTTCAAAGACAATGATGCCCAGCACATGAAGGTCCTGGGGGAAAAGATAGCAGAGCATTACACGACCCTGCTCATGGAGAACGAAGACATCTCTGAGAAAGTCTGTTGTGCCCTGCTGAAGGATCTGTCCACTCCGATGGCCAAAAAGCTTAAGGATGGCTTTTTTGCCAAGCCAGGCGGCTACGAGCTATACTGTGTAGACCagagagagaggacggcCCTTGCTGAACAGCAGAAGAGAATGGAAGAGCAGAAGCGACTGGAGATGGAGAAGACCCTAGAGGATGAACGCAAGAGCAACGAGAAGAGGTTGCGGCTGGCAGAGGAGAAGATgagagaggagatggagagCAGACGGCGGGAGGCCGAGAGAGCCCTGGACTCCAAGCTGAGGGAGCAGGAGGAACTGCTGAAGAAGGGCTTCCAGGAGAAGGCTTCCATGATGGAGAAGGAGATCCAGGGCCTCAAGGAAGAGGCCCAGGCCATGCAAGAGGAGATCCAGCAGCTCCAGGTATCCGAAcaggagaagaagaagcagTTGGCTCAGACGATGGGCAAGACCATCGTTGAGGGGTTTAAGGCCATCGCCAACTTTAAATTGCTGAGGAAACAGAAGTTAGCTGAGAAGGCCGAGAAGAAACGTCTGGAACAGAGCGGCAGAGCAGCTGAGGGTGGGGCCTATGATAGTCTCCCGAAGCAGACCAACTCCAAAGGCAAAGGCGTACAGTCAAGCGGGAGCCCCCCTAAGAACAACGAGGCCAACTCGGAAAAGATCCCAAAGCCGAAACAAGGCAAGACAAATCCCACTGAACAGACAGGAAGCGGCGTAATGTCAGGCAAGGGAAAAGAGGACAGCTTGAGGCCCAATGCAGGGAAGGGGGCAAGCCTTAACCCAGCAACCGAGAAGgctgtgaagcagcagcagcaggaggaagaaGGTAGCGCCGTGTAGAGATCACAGCACACTCCAGCCTCTATCACAGCTTCCTGTTAGTGAAGCCACCGCTTTGGCTCCTTCCTGTAACAGTAAACGTCACCTGAGCTCTTTAggtttctcctgttttctgtctgatTGACATCCAATCAACCCTATCATCACGTAAGATTTACTaacaagttttcaaaatgaggcatttcattttgcttttgttaaattAACCCTCTGCAGTGGGAAGATTAAGTGATGATTCTTTGCtcctttgtatttgtaatttcatttaattttcatgaGGAGAAACATGTTAATTTGAATCCTATTCCCCCACGCCTATGTCTGATTGACACCTCATTGTTAAAACCTTTTTGGTTGGGAGAGACTGTGTCAGCTACATCCTGGAATTAACTGCTCAAACTGTTGCACACTTAAGCAGAAACTTAATTCTTTCAACAAAGAATTACACAATTGATAAAAAGCtcttaaaaaacataacaaattgaAAGTATTGGTGATTTCCATGAGAATTACAGTTTCTCTGCTGCATATGTTTTTGGTGGTTGTTATTGATGAGGAACAtgccaataaaatatattcctttGCA

Function

GO: NA

KEGG:

id description
K20899 GBP1_3_4_7; guanylate-binding protein 1/3/4/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015261 True 2230 mRNA 0.50 9 6124100 6144724

Neighbor

gene id symbol gene type direction distance location
AMCG00015259 NA coding downstream 27082 6084877 ~ 6097018 (-)
AMCG00015260 NA coding downstream 40609 6078223 ~ 6083491 (-)
AMCG00015258 NA coding downstream 115856 5975211 ~ 6008244 (-)
AMCG00015251 NA coding downstream 210163 5900594 ~ 5913937 (-)
AMCG00015247 NA coding downstream 243910 5865044 ~ 5880190 (-)
AMCG00015270 dyrk1b,LOC106605641,LOC106578455,LOC107685988,LOC107737818,LOC107666783 coding upstream 285894 6430618 ~ 6440642 (-)
AMCG00015272 fbl,LOC107719117,LOC107666874,LOC102785674,LOC107737817 coding upstream 343718 6488442 ~ 6501219 (-)
AMCG00015273 LOC108437392,LOC105891768,LOC107719116,LOC107737835,LOC108256255,LOC107666762 coding upstream 370642 6515366 ~ 6525807 (-)
AMCG00015275 NA coding upstream 445469 6590193 ~ 6591000 (-)
AMCG00015274 NA coding upstream 463325 6608049 ~ 6609427 (-)
G96643 NA non-coding downstream 3098 6120654 ~ 6121002 (-)
G96642 NA non-coding downstream 4447 6118621 ~ 6119653 (-)
G96609 NA non-coding downstream 91973 5927459 ~ 6032127 (-)
G96532 NA non-coding downstream 331486 5792403 ~ 5792614 (-)
G96531 NA non-coding downstream 335253 5786397 ~ 5788847 (-)
G96650 NA non-coding upstream 12379 6157103 ~ 6223629 (-)
G96653 NA non-coding upstream 83790 6228514 ~ 6228776 (-)
G96696 NA non-coding upstream 210296 6355020 ~ 6362409 (-)
G96873 NA non-coding upstream 842676 6987400 ~ 7063937 (-)
G96967 NA non-coding upstream 1128187 7272911 ~ 7277373 (-)
AMCG00015257 NA other downstream 51975 6025368 ~ 6072125 (-)
AMCG00015256 NA other downstream 59941 6049477 ~ 6064159 (-)
AMCG00015244 NA other downstream 366991 5753593 ~ 5757109 (-)
AMCG00015230 NA other downstream 661072 5394386 ~ 5463028 (-)
AMCG00015211 NA other downstream 1040913 4985572 ~ 5083187 (-)
AMCG00015267 NA other upstream 224030 6368754 ~ 6384620 (-)
AMCG00015271 NA other upstream 265923 6410647 ~ 6419481 (-)
G96766 NA other upstream 554133 6698857 ~ 6700357 (-)
AMCG00015283 NA other upstream 725738 6870462 ~ 6877734 (-)
AMCG00015285 NA other upstream 746511 6891235 ~ 6896427 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011796 zmp:0000000527 coding NC_007128.7 CM002901.2 53356451 ~ 53360342 (+)
grasscarp (Ctenopharyngodon idella) CI01000098_02832999_02842305 NA coding CI01000098 null 2832527 ~ 2842547 (-)