AMCG00015272 (fbl,LOC107719117,LOC107666874,LOC102785674,LOC107737817)


Basic Information

Item Value
gene id AMCG00015272
gene name fbl,LOC107719117,LOC107666874,LOC102785674,LOC107737817
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6488442 ~ 6501219 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015272
ATGAGTGCATGCTCGCTGGCGATCTCCATCTTGGGGAGAGACTTGGTTTCAGCCCAAGAGGAGGCCGCGGGGGTGGTTTTGGTGATAGGGGAGGTTTTGGTGGACGAGGTCGGGGAGGATTCGGGGAtcgaggtggaggaggtggaggaggattCAGGTCACCTGGTGGTGACGGGGGGTTCCGGGGGGGCCGTGGGGGCACCCCTAGGGGCCGCGGCGGGAGAGGAGGCCGTGGAGGAGGAGGTGGCTTCAGAGGAGGAAGGAAGGTGACTGTTGAGCCCCACAGACACGAAGGGGTGTTTATCTGCCGTGGAAAGGAGGATGCACTGGTGACCAGGAACATGGTGATTGGGGAGTCTGTGTATGGTGAGAAGAGGATCAATGTGGAGgaggGCGAGACTAAGATTGAGTACAGAGCATGGAACCCCTTCCGGTCCAAACTTGCAGCTGCCATCTTGGGAGGAGTGGATCAGATTCACATCAAGCCCGGAGCCAAGGTCATGTACCTGGGGGCGGCCTCGGGCACCACTGTCTCCCACGTCTCGGACATCGTAGGGCCGgaGGGGCTGGTTTACGCAGTGGAATTCTCTCATCGCTCGGGTCGAGACCTGCTCAATGTGGCCAAGAAAAGGACCAACATTATCCCCATCATCGAGGACGCCCGCCACCCCCACAAGTACAGGATGCTCGTAGGTATGGTGGATGTGATCTTTGCCGACGTTGCACAGCCTGACCAAACCAGAATTGTGGCGCTCAACGCTCACAACTTCCTGAAGAACGGTGGTCATTTTGTCATCTCCATCAAGGCCAACTGCATCGACTCCACAGCAGCCCCGGAGGCGGTGTTTGCCTCAGAGGTGAAGAAGATGACCCAGGAGAACATGAAGCCCCAGGAGCAGCTGACACTGGAGCCCTATGAGAGAGACCACGCTGTGGTAGTGGGCATCTACAGGCCGACACCGAAACAGAAGAAATAGTGTTGGACTGGCACTGACGGTTGGCACATTGCAGCTTGGCACAGctcccccaccctccccaaCTTTTCCCCAAATCTCCATTTATAAACTGCCAGTGAAGGCCCTGAGGACTGGGGCTGTAGTGACAGTGTTGATCAACAGACACACTGAATGGACAGTGACCTGTACTGCGCCCCCCTTTCATCCTTTGAATCTCTGAACACAAGGAGACCCAGCCAAACAGGACGTACCCTCCCGGAGCGGCAGACTGAAGCTTTATTACTCCTTCCACCCGTGCTTCAGAACACCCCCCATCATGCAActtttccctctttttctccctcccttgCTTGTAATTTTGTACTCCAGATTttctagaaagaaaacaaagagggaggggtgggggaaaTGTGATCTAGGttcatctttgtttgtttggtttatttttcttccctttgGTTACTAGGTAGTTGAGAATCTCAACTGGTTTAGTATGTAACAGCCAGTGCTTGTGGGACACTGATCTAAGTgtggcttttttatgttattattctGAATGACATTCATCCAATTGCCATGTGATGTCTTGGCACAAACAAGTGATTGGATCACTGAAGAGGATTGTAAGAGCTCGACCTCAGTCATCACACAGCTGTAACTTTCcggtttacttttttaattaaaattaccaAACTAAGTAATGTGATGAGGTGGTTATTCTTGAGACAGTTCTGATTGGTGATCTTCACATCCACTCCTCCGTGCCACAGGGCCTTCAGATTTTAGGCCACTCGAGGTCACCTGCATCAGAGCCAGGAAAGGGTCTCCATTGGTTAAGGTACCTGAAAAGTTAAGCCAAATTACCATTTGGGAGTGGAgttacaatgaaaaacaactgaCTTGAGATTTTCAGGCCCACACTGCACTTTCCCAGTTTCTGCCGGTGAGCTTGTGGGTTTTGTCCATTCAGTAGTGTGTTTTTTCCATGGGGTTTAGTCACCAGCGAGGCTGCAGGTAGTTTGTGTTTTATCAGCCTGGacgacaaaaaaagaaaaaaagggacCGCAGCAGATCGGCTGCATTCTAGTCCCCTCCACCCCACTTACTTGGGCTTAATTTAGAAGGCTTTGTTCCTGccactttgttttaaaagtgcattGCAAATGCCAGTCTCCCACTCAAAGCACCTTTGGCAGTGAAGGTGTGAAGGTTTATCTGAGAACGGACTGTTCTCCATTGAATGCCTACTCTGGTCTCCTGTGCCACATATTGGGCAGCTTTCCTGGGGCTGGAGTGGAGAGCATTACATAGAACTGGAGTGGAAAATAATTCACATCGAAAATCACCTTGGAAGTCTGAACACAACTACCAGGGGGCCAACAACCACACATTCTTTACGCAAACCCAACCACTTATGATGGTCTAAATATGAAGCACTCTCACTTGAAGTaaccactgtaaaaaaaaaaaaaaagttttgaaaaggGGGAAATATAATGGCAACAAAACACCAAGTTTAAAATGGAGCACACAGTCAGTTTATCAGTGAAGCAGGGGGTTTTGACACTGCTCATACAACTACGTTTTCAGCATGATTTTAGTACACCAGGATATGCAACAATAGCTTTGTGGGTGATGTAATGCAGAAAGGGTATAAAACCCATACTGCCCTAATCAACTCAACACTGCAGCTTCAGTTGAAAGGCCACTATGTTTACATCAGAACAGACTTACCAGGGTGGTTGAAAAAGTGGGCCAAATGAAGAGGGGAAACTCCACAACCAATTGCATCTGCTTTCAGTCCTGTCACAAAGTCCTAGGATTATTGGTTCCTTCTGTAGGCTTTGTCTTCTGCACATAGACCACAGTGGCTGCTAAGAAATGAGCTAACAcaataaatgga

Function

symbol description
fbl Predicted to enable RNA binding activity; histone-glutamine methyltransferase activity; and rRNA methyltransferase activity. Acts upstream of or within neurogenesis. Located in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; musculature system; and nervous system. Orthologous to several human genes including FBL (fibrillarin).

NR:

description
PREDICTED: rRNA 2'-O-methyltransferase fibrillarin-like isoform X1

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0005730 nucleolus cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14563 NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015272 True 2859 mRNA 0.49 9 6488442 6501219

Neighbor

gene id symbol gene type direction distance location
AMCG00015270 dyrk1b,LOC106605641,LOC106578455,LOC107685988,LOC107737818,LOC107666783 coding downstream 47800 6430618 ~ 6440642 (-)
AMCG00015261 NA coding downstream 343718 6124100 ~ 6144724 (-)
AMCG00015259 NA coding downstream 391424 6084877 ~ 6097018 (-)
AMCG00015260 NA coding downstream 404951 6078223 ~ 6083491 (-)
AMCG00015258 NA coding downstream 480198 5975211 ~ 6008244 (-)
AMCG00015273 LOC108437392,LOC105891768,LOC107719116,LOC107737835,LOC108256255,LOC107666762 coding upstream 14147 6515366 ~ 6525807 (-)
AMCG00015275 NA coding upstream 88974 6590193 ~ 6591000 (-)
AMCG00015274 NA coding upstream 106830 6608049 ~ 6609427 (-)
AMCG00015278 NA coding upstream 171673 6672892 ~ 6691381 (-)
AMCG00015279 arhgap30,LOC106605587 coding upstream 230273 6731492 ~ 6765254 (-)
G96696 NA non-coding downstream 126033 6355020 ~ 6362409 (-)
G96653 NA non-coding downstream 259666 6228514 ~ 6228776 (-)
G96650 NA non-coding downstream 264813 6157103 ~ 6223629 (-)
G96643 NA non-coding downstream 367440 6120654 ~ 6121002 (-)
G96642 NA non-coding downstream 368789 6118621 ~ 6119653 (-)
G96873 NA non-coding upstream 486181 6987400 ~ 7063937 (-)
G96967 NA non-coding upstream 771692 7272911 ~ 7277373 (-)
G96984 NA non-coding upstream 834796 7336015 ~ 7337227 (-)
G96988 NA non-coding upstream 849290 7350509 ~ 7350785 (-)
G96994 NA non-coding upstream 861166 7362385 ~ 7364999 (-)
AMCG00015271 NA other downstream 68961 6410647 ~ 6419481 (-)
AMCG00015267 NA other downstream 103822 6368754 ~ 6384620 (-)
AMCG00015257 NA other downstream 416317 6025368 ~ 6072125 (-)
AMCG00015256 NA other downstream 424283 6049477 ~ 6064159 (-)
AMCG00015244 NA other downstream 731333 5753593 ~ 5757109 (-)
G96766 NA other upstream 197638 6698857 ~ 6700357 (-)
AMCG00015283 NA other upstream 369243 6870462 ~ 6877734 (-)
AMCG00015285 NA other upstream 390016 6891235 ~ 6896427 (-)
AMCG00015288 NA other upstream 416460 6917679 ~ 6923714 (-)
AMCG00015305 NA other upstream 889670 7390889 ~ 7448294 (-)

Expression


Co-expression Network