AMCG00015273 (LOC108437392,LOC105891768,LOC107719116,LOC107737835,LOC108256255,LOC107666762)


Basic Information

Item Value
gene id AMCG00015273
gene name LOC108437392,LOC105891768,LOC107719116,LOC107737835,LOC108256255,LOC107666762
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6515366 ~ 6525807 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015273
ATGAGCAACTACAAAGGCTGCATGGGGCAAGACGTGGAGAACCAGGGCAAAAAGCTGCCTAGTCAGCGATGGGATGCCCCGAAAGAAAAGGTGCCGACCAACCGGACGCTGGTGGTGGCAGCGGAGGAGCTGAAGAAGCGGCGACAGCGCTACGTGGAGAAGGATGGCAAGTGCAACGTTCACCACGGCAACGTTAGAGAGACCTACCGCTACCTAAGCGATATCTTTACCACCCTGGTGGACCTCAAGTGGCGCTTTAACCTGCTGGTATTCACCATGGTCTACACCACCACCTGGATCTTCTTCGGCTTCATCTGGTGGCTCATCGCCTACATCCGGGGTGACCTGGAGCACACAGATGACCGAGACTGGATCCCCTGCGTCAACAACCTCAACGGCTTTGTCTCGGCCTTCCTGTTCTCCATCGAGACTGAGACCACTATCGGTTACGGTTACCGGGTTATCACGGACAAGTGCCCAGAGGGGATCATTCTCCTGCTGGTCCAAGCCATCCTGGGCTCCATCGTCAATGCCTTCATGGTGGGCTGCATGTTCGTGAAGATCTCCCAGCCCAAGAAGAGGGCTGAGACACTCATGTTCTCCCACAAGGCTGTAATCTCCCTGAGGGACGGGAAGCTGTGCCTGATGTTCCGGGTGGGCGACCTCCGGAACTCACACATTGTGGAGGCCTCCATCCGGGCCAAGCTCATCCGGTCCAAGCAGACCAAGGAAGGCGAGTTCATCCCCCTCAACCAAACCGACATCAATGTGGGCTTCGACACAGGTGACGACCGGCTCTTCCTCGTCTCGCCGCTCATCATCTCGCACGAGTTCAACGAGCACAGCCCCTTCTGGGAGATCTCGCAGGCCCAGCTGAGCAAGGAGGAGTTTGAGATCCAAATGGCAAACACTCTACAGGGGATGACTTGCCAAGCCCGCAGCTCCTACCTGGACTCAGAGGTCATGTGGGGTCAAAGGTTCATGCCTGTCTTGACCCTAGAGGAAGGCTTCTATGAGGTGGACTACGACACCTTCCACAACACCTACGAGACGCCCACTCCATCTTGCTCGGCCAAAGAGCTGGCAGAGCTGGCCAAAAAGGGGGAGGCCATCCCGCTGCCCCTCCCTGACTCCCCAGGACTGTCCCCTGGGCTGGACAGCCAGGGAGGGGTGCCAGAGGAGACCAGGGAGCAAGGAGGGGGTGAGGGAGAgctggagggggaggaggaggtgttTGTGAGGGAGATGGGAGATGgtagaggggagagggagaatgtCACCAATGGAGATATCAACAAAATGGAGAACGGAGAGTGA

Function

NR:

description
PREDICTED: G protein-activated inward rectifier potassium channel 4-like isoform X1

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
K05000 KCNJ6, KIR3.2; potassium inwardly-rectifying channel subfamily J member 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015273 True 1317 mRNA 0.58 4 6515366 6525807

Neighbor

gene id symbol gene type direction distance location
AMCG00015272 fbl,LOC107719117,LOC107666874,LOC102785674,LOC107737817 coding downstream 14147 6488442 ~ 6501219 (-)
AMCG00015270 dyrk1b,LOC106605641,LOC106578455,LOC107685988,LOC107737818,LOC107666783 coding downstream 74724 6430618 ~ 6440642 (-)
AMCG00015261 NA coding downstream 370642 6124100 ~ 6144724 (-)
AMCG00015259 NA coding downstream 418348 6084877 ~ 6097018 (-)
AMCG00015260 NA coding downstream 431875 6078223 ~ 6083491 (-)
AMCG00015275 NA coding upstream 64386 6590193 ~ 6591000 (-)
AMCG00015274 NA coding upstream 82242 6608049 ~ 6609427 (-)
AMCG00015278 NA coding upstream 147085 6672892 ~ 6691381 (-)
AMCG00015279 arhgap30,LOC106605587 coding upstream 205685 6731492 ~ 6765254 (-)
AMCG00015282 NA coding upstream 309396 6835203 ~ 6854561 (-)
G96696 NA non-coding downstream 152957 6355020 ~ 6362409 (-)
G96653 NA non-coding downstream 286590 6228514 ~ 6228776 (-)
G96650 NA non-coding downstream 291737 6157103 ~ 6223629 (-)
G96643 NA non-coding downstream 394364 6120654 ~ 6121002 (-)
G96642 NA non-coding downstream 395713 6118621 ~ 6119653 (-)
G96873 NA non-coding upstream 461593 6987400 ~ 7063937 (-)
G96967 NA non-coding upstream 747104 7272911 ~ 7277373 (-)
G96984 NA non-coding upstream 810208 7336015 ~ 7337227 (-)
G96988 NA non-coding upstream 824702 7350509 ~ 7350785 (-)
G96994 NA non-coding upstream 836578 7362385 ~ 7364999 (-)
AMCG00015271 NA other downstream 95885 6410647 ~ 6419481 (-)
AMCG00015267 NA other downstream 130746 6368754 ~ 6384620 (-)
AMCG00015257 NA other downstream 443241 6025368 ~ 6072125 (-)
AMCG00015256 NA other downstream 451207 6049477 ~ 6064159 (-)
AMCG00015244 NA other downstream 758257 5753593 ~ 5757109 (-)
G96766 NA other upstream 173050 6698857 ~ 6700357 (-)
AMCG00015283 NA other upstream 344655 6870462 ~ 6877734 (-)
AMCG00015285 NA other upstream 365428 6891235 ~ 6896427 (-)
AMCG00015288 NA other upstream 391872 6917679 ~ 6923714 (-)
AMCG00015305 NA other upstream 865082 7390889 ~ 7448294 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_03660816_03671233 KCNJ9, KCNJ6, KCNJ5 coding CI01000027 null 3660816 ~ 3671515 (+)