AMCG00015278


Basic Information

Item Value
gene id AMCG00015278
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6672892 ~ 6691381 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015278
tatttgcaaatattttattaccatGTGCTGCATAACATGAACATTCAATGGAGGTGTTCAATGGAAGAGGCAATCAGAAATATCACAGGGACAGAAAAAGCTTCTATATCCCTCCCCCCCATTTACAATAGAGCGCACACGCGGGGAGACCGGCCGGGTGCAGACACCTTCTGCTCCGACAGATCTTCCTGAAGAGCGTCGATTAACTGATCAAAGTCAAACTCGTCTAACTGGTGGGATGAGATGAGGAACACTTGGGGGTCTGGCAGAGTCTCACTTTGGAGGTTTCTCACGCAGTCCTGTCTGATTGTGTCCAGCGTCTGTTGTCTATTGAAGCTCGTCCTTCTCTCTGCAGCGCGGATGTCAGTGTCGACCTGTGAGCGGACAAAGAAGAACTTCTTCCCTCTGTTCTGTATGTCTTTGACGAGCAGAGTATCGTACTCCGTAAACCGCTTGCTGCCGATGATGATGAAGAAATCATACTGGTCGAAACTCATCTTCTTCGTGTAGTCGTCTGCAGGACATACTTGACCTCCAATTCCCGGTAAGTCCCAGAACGCCACATGTGGGTACCGGGGATGTGTGTACCTGGTGGGCTGCGCGGTGGTTTCCGTCTCCCCGGTCGGTGCGGCCCCCTCGTCGTCCTCCCCCAGTTCCCTGACCGCGTTGATGAAGGAGGACTTGCCCGCTCCAGTTGCTCCAGTAACGGCAACTTCCAGTGTAGCAGTATTCATGGAGAGTCTAAAACCCACGCGTGTGTAAACTCAGTGCACAAGCGCGGTaaacacagttttattttcGATATTCAACACTCATTGACTGCTGTCTCCAATAGCTTCTGAAAAACACCGCGGATTCTTTCGAAATGGCTTGTGATTTGAAGGGGGACATGAGGACCACATTTCACAAGCTCAACTGAATCATGTCCTCCAGACTGCAGGGTGCAGAACCGAGCTGTAGTGCGCGGAACATGCCACTCACTGGATTCTCCCAACGATTGGCCGCCTCTGCAGCGCGTTGGTGCCCCGGAAGCAGCGTGTTGAGATGGGATCGGCGGCGGTGTGTGCAGACAGAGAGGGGCTCCACCGCCGGAGCAGCGGGGCTATAGTTTCCACACCACGCCAGgGGTTCTTTTGGATTTGTGTAGCTGCTGCGAAGCTGTGGATTCCATCTCGGTGTTATTGCTATGAGTGACCAAACGAACTCCAAAGCCCAAGTTCTGTGACTTCTGCATCCTGGTGTGTCCTATAAATCAGCTGGTGCACTTTCAGTTGTAAGGTGGGCCGCCGACCGACTGAATGCAGAGAACGGTGGCAGTGATCGGAGGGGGTATCGGTGGGCTCTCCGCTTGCTATCACCTCAGCAAAAGCCCCCAGGTGTCCAAGattgtcctgctggaagcgGGAGCCCGGGTGGGCGGGTGGCTGCACTCCACACGCCGGGAGGATGGAGCAGTGTTCGAGCACGGGCCCAGAGGGATCCGTCCCGCTGGAGCTGTGGGCAAGGCCACGCTAAACATGGTTTCGGAGCTGGGGCTGGACAGTGACGTGCTGCCCGTGCCTTCGGATCATGTTGCCTCCATGAACCGCTTCCTGTACGTCGGGGGGAAGCTGCACAGAATGCCATCTGGAGTAGTTGGGGTGCTGCGGACAGTGCCCCCCTTCTCCCGGCCGCTGGTCCTCAGTGTCCTGAAGGAGCTGGTGACCCGCAGAGGGGACAGTGAGGATGAGTCCATCCACCGGTTTGTGGAACGACGGCTggggaaggagCTGGCCGACATCGCCATTGACAGCCTGTGCCGTGGCGTGTTTGCCGGGGATTGCCGGCAGCTCAGCGTCCGTTCCTGCTTCCCGCCACTGTTCCGTGCTGAGCAGGACCACGGCTCCATCGTGCTGGGGATGCTCTGGGGAGGCGAGAAGGAAAGTGGCCAGCAGAGCGCACTGGTGAAGCGGTCCCGAGAGGAGCGCTGGACACAGTGGTCCCTGCGGAGGGGCATGCAGACATTACCCGATGCGCTTGAGGAGCGGCTGAAGGCCAGCGGCAGAGTGGAAATCCACACTAACGCCCCCGTGTGCAGCCTGAGCCGGACAGGAGGGGGCAACGGCTGGGAGATTGCACTACAGGATGGCACAGTGAAGGCAGACCACATCTTATCTGCCGTCCCAGCACAAGTGCTGGGCTCCCTGCTGCCCCCTGATGCCCAGCCTCTGTCAGAGGAGCTGCGCAGTATCCCATCGGTGTCTGTGGCGGTGGTAAACCTGGAGTATGAGGGGTCAGTCCTGCCAGTCATGGGCTTTGGTCACCTGGTGCCGTCCTGCGAAAACCGCACCGTGCTGGGCATCGTCTATGACTCAGTCCCTTTCCCCCAACACAACCGCAGAGGGGAGCCCACCACCAGACTCACCGTCATGATGGGGGGAGCCTGGTTCTCTGAGGTGTTCGGGAGCACAGAACAAGTGACGGATCTGCAGCTGAGGCAGGCAGCGACGCAGGCTGTGAAGACCCACCTGGGAGTCTCCTCGGAGCCGCTGTGGGGCTATGTGGCGTTGCAGAAGaactGCATACCGCAGTATACTCTGGGACACTGGAAACGACTTGAAAACATCAGGCAGTACATCAACCATCACGATCTGCCCCTCACCCTGGCGGGGGCCTCGTATGATGGCGTCTCGGTGAATGATGTCATCCACAGCGGGTGGACAGCAGTGGAGGGGTTTCTGGGAAAGGCCTGAAACACCCACGTAGATGCGTGTGTTTGAAGCCTTATGGACTGCTGTACAGGAGACCACCTACCTGAATGTATCACACACTTCTTTCCCACTGCCTTTGACTTCACAAAGGGCCCGTGGAGGTTATTCATGGAGATCGGTGACTAACCCTCATTTTAACTTCTGCTCTGGAAGCCCAGGGATTCGATGCTACTTTAGAACTGATAGGTCAGAGGTCAATGTTTACAGTGAGGACACGGCCCACTGTCCCAAACAGCAGACGACTGTCATTGGTGCCTTTTCTTCACATTAAACCATTCACTTTTGCCCATGAGTTCTTCAGCTGTTGGCTACATTTTGAATAGCTCCCTTTTTAACTTTGTTGTACTTTCCACCAGAGGTGGTGGACACTTCATATGCAGATCATCAATGTCATTGTTGggtttccactttttttttcctttcttcactGATATCACTGTAGTTCTACTACTCCTGAAAGGTCTATGATGCTTGCTGTTGCTTATTAAATCAGAAGTGATTTACATTGTGTGCCTACTTGTAGCCCCTCTCCGAGTCTGCATGGTACTGGCGCGTGGACAGCAACTTGCATttgttccactgaagggaaaaaaattactTCTGAAACGCAGTGGAATAGATCTgaaaggtttattttgtgtgatgcctctctctcacacaaaaaGACACTAAATCATGGTGTGAAGCTTAGCTGATACAAAATACTGTGATATTGTAATAGCCTAATGAGTGTCCAATGAATATTCCACCTCTTCTTTTTATTGACAAACAGTTGACCAACAGTAGCAGGCAATTTCTGGCTCCCTTTGCAGTGAGCACTATTCTTAAATCTCTTCATGCAAGAGGGAGACTCAATTTTCACGAAGAATTCAGCACTGAATGCAAAAGGCATGATCATTATcaactcaaataaaaataagtttaatcTTTTACAATGCCACACTTCAGAATTGTGATTGCTCTCTGGTCTAATATTCTTGGTAAATAAGTGATTTGTTTCGGTCCTTTTCATCCATGGTGCCTCTCCCACTgcatcagtttttgttttttcaaacattttcatgtttctAGCTCttctaaaattaataaaataaccttGGTATCTACAACA

Function

GO:

id name namespace
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity molecular_function

KEGG:

id description
K00231 PPOX, hemY; protoporphyrinogen/coproporphyrinogen III oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015278 True 3861 mRNA 0.52 16 6672892 6691381

Neighbor

gene id symbol gene type direction distance location
AMCG00015274 NA coding downstream 63465 6608049 ~ 6609427 (-)
AMCG00015275 NA coding downstream 81892 6590193 ~ 6591000 (-)
AMCG00015273 LOC108437392,LOC105891768,LOC107719116,LOC107737835,LOC108256255,LOC107666762 coding downstream 147085 6515366 ~ 6525807 (-)
AMCG00015272 fbl,LOC107719117,LOC107666874,LOC102785674,LOC107737817 coding downstream 171673 6488442 ~ 6501219 (-)
AMCG00015270 dyrk1b,LOC106605641,LOC106578455,LOC107685988,LOC107737818,LOC107666783 coding downstream 232250 6430618 ~ 6440642 (-)
AMCG00015279 arhgap30,LOC106605587 coding upstream 40111 6731492 ~ 6765254 (-)
AMCG00015282 NA coding upstream 143822 6835203 ~ 6854561 (-)
AMCG00015287 NA coding upstream 192663 6884044 ~ 6885454 (-)
AMCG00015286 NA coding upstream 261938 6953319 ~ 6968744 (-)
AMCG00015295 NA coding upstream 324735 7016116 ~ 7030193 (-)
G96696 NA non-coding downstream 310483 6355020 ~ 6362409 (-)
G96653 NA non-coding downstream 444116 6228514 ~ 6228776 (-)
G96650 NA non-coding downstream 449263 6157103 ~ 6223629 (-)
G96643 NA non-coding downstream 551890 6120654 ~ 6121002 (-)
G96642 NA non-coding downstream 553239 6118621 ~ 6119653 (-)
G96873 NA non-coding upstream 296019 6987400 ~ 7063937 (-)
G96967 NA non-coding upstream 581530 7272911 ~ 7277373 (-)
G96984 NA non-coding upstream 644634 7336015 ~ 7337227 (-)
G96988 NA non-coding upstream 659128 7350509 ~ 7350785 (-)
G96994 NA non-coding upstream 671004 7362385 ~ 7364999 (-)
AMCG00015271 NA other downstream 253411 6410647 ~ 6419481 (-)
AMCG00015267 NA other downstream 288272 6368754 ~ 6384620 (-)
AMCG00015257 NA other downstream 600767 6025368 ~ 6072125 (-)
AMCG00015256 NA other downstream 608733 6049477 ~ 6064159 (-)
AMCG00015244 NA other downstream 915783 5753593 ~ 5757109 (-)
G96766 NA other upstream 7476 6698857 ~ 6700357 (-)
AMCG00015283 NA other upstream 179081 6870462 ~ 6877734 (-)
AMCG00015285 NA other upstream 199854 6891235 ~ 6896427 (-)
AMCG00015288 NA other upstream 226298 6917679 ~ 6923714 (-)
AMCG00015305 NA other upstream 699508 7390889 ~ 7448294 (-)

Expression


Co-expression Network