AMCG00015285


Basic Information

Item Value
gene id AMCG00015285
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6891235 ~ 6896427 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015285
ACTGTATTTATGGTGATGTCATGATGATTGACACTACTGGTGCATCGGAAGAAACAGCCAAACAGGATCATTTAACTGTTAATAAGCTCTACTACACACCAGAAGGCGAGTGGAACAGTGAGGAACATGTTGCTCAAGGCACCCAGATCCTGATTGACTTCATCATCAGGATTAAGAGAACGTTCCCAAATTGGCCCAAGGAGCATTGGTTTAAAGGGGGGATAGCAGCCTACTGTGCTGGAGATGGAAATGTGGAGTCGTATGAAAAGGTGGATGATCACACCACTGGAAAGGACTTTGCCAATTATGTTGTTGCCAGAGCCCAGTGGTACAAGAAGAATGgattt
>TU120743
aaaatgaGCAAAATCTGTGAAAATGAGAAAGTCTGAATTCAATGCACAAATTGGATGAAGGCAGTTCTGTGACaatttctgaaatacatttttgttaattgaaTTTCAGGTTAATAAGCTCTACTACACACCAGAAGGCGAGTGGAACAGTGAGGAACATGTTGCTCAAGGCACCCAGATCCTGATTGACTTCATCATCAGGATTAAGAGAACGTTCCCAAATTGGCCCAAGGAGCATTGGTTTAAAGGGGGGATAGCAGCCTACTGTGCTGGAGATGGAAATGTGGAGTCGTATGAAAAGGTGGATGATCACACCACTGGAAAGGACTTTGCCAATTATGTTGTTGCCAGAGCCCAGTGGTACAAGAAGAATGgattttgaaataatgataattctTAGgcctctgaaaaataaagtggcAATTCTGAAATTCTAATGCATTTATGTTTCATTAGatgcaatgtttttgttaaaattgtattgggGACTATTAAACTCTTATTGgactattaaaatacatttcttcctTGGAGGGGGAATGAAGCCATAGCTGGGTGGGCCAGCAATTTGTCt
>TU120746
atttaTGCACCTTTTGTTGAAAATGCAAACCCGGAAGATATCTGTaagaaaagctgtttgaaccCTCTGTTCTTCCGGGCCGGCCTTTTTAAAagacttattttccatttgcagcCCGTTTTcgttaagagggtttcttcaggCTGCATAAAAAGTTATTGACAGTTACTCAACAACCAATACCAGTGTTTTGAATCGTGTGTGGGCGTGGCTTGCCTGGAGAAGGATTGGACTGTATTTATGGTGATGTCATGATGATTGACACTACTGGTGCATCGGAAGAAACAGCCAAACAGGATCATTTAACTGTGAATGG

Function

GO:

id name namespace
GO:0016998 cell wall macromolecule catabolic process biological_process
GO:0009253 peptidoglycan catabolic process biological_process
GO:0003796 lysozyme activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015285 False 347 mRNA 0.45 3 6891430 6895164
TU120743 True 574 lncRNA 0.39 2 6891235 6892166
TU120746 False 316 lncRNA 0.42 2 6895080 6896427

Neighbor

gene id symbol gene type direction distance location
AMCG00015287 NA coding downstream 5781 6884044 ~ 6885454 (-)
AMCG00015282 NA coding downstream 36674 6835203 ~ 6854561 (-)
AMCG00015279 arhgap30,LOC106605587 coding downstream 125981 6731492 ~ 6765254 (-)
AMCG00015278 NA coding downstream 199854 6672892 ~ 6691381 (-)
AMCG00015274 NA coding downstream 281808 6608049 ~ 6609427 (-)
AMCG00015286 NA coding upstream 56892 6953319 ~ 6968744 (-)
AMCG00015295 NA coding upstream 119689 7016116 ~ 7030193 (-)
AMCG00015294 NA coding upstream 141420 7037847 ~ 7042992 (-)
AMCG00015296 NA coding upstream 189269 7085696 ~ 7100008 (-)
AMCG00015301 NA coding upstream 230878 7127305 ~ 7213377 (-)
G96696 NA non-coding downstream 528826 6355020 ~ 6362409 (-)
G96653 NA non-coding downstream 662459 6228514 ~ 6228776 (-)
G96650 NA non-coding downstream 667606 6157103 ~ 6223629 (-)
G96643 NA non-coding downstream 770233 6120654 ~ 6121002 (-)
G96642 NA non-coding downstream 771582 6118621 ~ 6119653 (-)
G96873 NA non-coding upstream 90973 6987400 ~ 7063937 (-)
G96967 NA non-coding upstream 376484 7272911 ~ 7277373 (-)
G96984 NA non-coding upstream 439588 7336015 ~ 7337227 (-)
G96988 NA non-coding upstream 454082 7350509 ~ 7350785 (-)
G96994 NA non-coding upstream 465958 7362385 ~ 7364999 (-)
AMCG00015283 NA other downstream 13501 6870462 ~ 6877734 (-)
G96766 NA other downstream 190878 6698857 ~ 6700357 (-)
AMCG00015271 NA other downstream 471754 6410647 ~ 6419481 (-)
AMCG00015267 NA other downstream 506615 6368754 ~ 6384620 (-)
AMCG00015257 NA other downstream 819110 6025368 ~ 6072125 (-)
AMCG00015288 NA other upstream 21252 6917679 ~ 6923714 (-)
AMCG00015305 NA other upstream 494462 7390889 ~ 7448294 (-)
G97125 NA other upstream 889660 7786087 ~ 7786442 (-)
AMCG00015333 nxf1,LOC105897453,LOC108417053,LOC106603139 other upstream 1173608 8070035 ~ 8091826 (-)
G97411 NA other upstream 1234880 8131307 ~ 8134115 (-)

Expression


Co-expression Network