AMCG00015306


Basic Information

Item Value
gene id AMCG00015306
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7462555 ~ 7473836 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015306
GTCTATGGTACCTGGGCGCAGTGGAATGTGTGGATGCCAAGAGACATTTCCACCATGACAAACTCGTGCGTGGTCATCCCATGCACCTTCATGTATCCTTCGGGGGTGAGGCCATACAGGGGCATTCATGGAATTTGGTACTTCGGGCAGCCCTACCCACAGTTCTTCCCACCCGTGGTGTTTAAATCTCGGACTGACATCGTCCACGAGAGCTACAAGGGCCGCACCAAACTGTTGGGCGACCTGCAACAGAGAAACTGCACCCTGCAGATCAACAACATTGGCATTGAGCACTCTGGGAGATATTACTTCAGAGCAGACCTGGGCGGCACCAACATCTTCACCTACCCCGACTTCTCTGAGGTTAAAGTACTGGATCAGCCCATCATCGAATTGCCTGAAGAGATAATCAGCAATCAGTCCCTGGAGGTTACTTGCTATGCCCCGGACAACTGCCCCGACATGAGCCCTGAGGTGAACTGGATGAACACCGAGTATCTCCCCAACCTTCAGTTCTCTAGTGAATACCTCGTGGAGAGCACGACTGCAGTCATGTCCACCACAATCACCTTCACCCCCACCCACAAACACAATGGCAAGCTCCTGGGCTGCAAGGTGCAGTACCCCAACACCACGTACATCTACGAGAGGATCATCGCACTGGACGTAAAATATGCTCCCAGAGCTGTTGAAGTGAACGTGTCCACGGATGTTATGGAAGGCAGCATGGTGATTCTTCACTGCCTGGTGGACAGTAACCCCCCGTCGCGCATCAGCTGGGTCATGCTGGACACGGAGCTACAAGCGGAGACCTCCCTGAACTCCTCCCTGGTGATAGAGAGCATCGAGTCCGGGCAGGAGGGGGTGTACACCTGCGTGGCCGACAACGGCTATGGGACGATGAACAGATCCCTCTACCTTGCCGTCAAGTATCCTCCACGTGAGCCTTTGGTGAACGAGTCCTCGACGGTGGTGGAGGGCAGCAACCTCCATCTCCACTGTAGGACCCAGGGCAACCCCGTACCCACCCTCACCTGGCTGAAGGATGGCAACCTGGTGGGCAACATCATCGCCGAGGAGCACTCAGTCCTGGAGATCGAAGACATCACTTATGAGGGCGACGGAGAGTACCGGTGCCTGGCTGAGAACGAGCACGGCCGTGCCAGCAGTGTCATCAACATCACTGTGGAGTTCGCTCCGGTGTTCCTCCTGGAGTCCAAGTGCATGGCGGTCCGAGAGGGGAtccagtgcgtgtgtgtggctTCGGGGAACCCCGAGCCGGCTATCGAGTTCCACCTCCCTGACCTCAACGTCACCATCAATGAGACAGAGAGCCGGTTCAACTACTACACCCACAGCGATGGCTATGTGGCCACCAGCATGATCAAGCTGAAGGACAAGCCAGCCTCTGGGCTCAATGTTCTGTGTACCATGACCAACATATACGGCACAGAGACCGTCCGGCTGGAACTGCAGCAGGAAAGGAAATACATTTTGGCCGTGATTATTGGCACCATCGGAGGAGTGGCAGTTATCGGTTTTATCATCGCTGCAGTTCGATATATCAGTCGCAAAAACCAGAAGGAGAATGCTAACCCTGGTCAGGACCTGACCCTGAAGCTGGAAAGCCCAGCCTTGTTCTACAGTGCAGTGAAGAAGGAGAAGCCCAGTTTGAGGAAAAAAGTGCTTAAGACAGAGCTTTTGGGCACAAAGTTTAACTCAATCCTAGAGGAGCCCTCGACGGGCGAAGACAGTGATTATCAGAATATCGTGTCTTTCTCCGATGTGGACATCAACTACGCCTCTCTGGAGTTCTCCTGCATCCGGCCAAAAGAAGCATCGGCTAAAACAGACGACACCAGTGACTACACAgagatcaaatcaaaatgagCTACCGATGCCCTCTAACACTGCCCCCCCCAACCACCCAGTAGAGTCACCTCTCCCTCCTCACCACACCACCACTGGCCAGGGACTTGGGATAGTTTACAGGAAGGAACCGTTTTAGCCTAAAGAAGCCACTGGATTTGTCCCTTTTCATGATAATTTGAGCAGAATCAGCGTTGTTCCACTCGATTACACCTCTAATATAGCACAGCAATTGTCTTTCACTGTGTCCATGTATTTGAAGctgctctgtttgtttgttggaaGAATTATTCAAGCATTACAACCATTTAGGTGTAGCAGTTCAGTACATACCTTGATGCTAGCATGCACAGCTTCAAATCACTTGAATACCATCATGTCAAAGATATAGGTCCACCTGAATTCAGAGTACAGATGACGACTCCAATTCATTTCAAGGGAGGTGCCAAGCTCAAGGTATCTTAGTTAAAGAAAACTGATGGTTTACAATACTTTTTACCACAGGAAATCTGGGATGCACTTCTACTGCTACAGACACGTCTACACATGCAAAATATCTGGGAACAATCACTCTgtacaaaagtgcaaaacagcCTTCATAAGATGAGATTTGTTTAAGAAGTGTATGTGAAATACTTTCACCACACAGGTGATACTTTCACATCTGGGAAATTAATATTTGGAAGTCAAAGCCTGCAGATGAAAAGTAACTGaagaaatcataaaaaatactaGCAGCTCATgacaatagaaaataaataaagcaaacagtTACACACTGGCAACTTGTTCTGACATGGTTAGCGACACAAGGTATAAACAGTAAGCTTGATGCAGaagtgacattaaaaatacttttacccTTTAACTCTAGTGTTCTTCATTAAACTGTTTAGATAGATGTAACATCCATGCATAACTATAACTGTAATGACAAAGAGTTTAAACAGTTCAATGAAGACAACCCGCCAAAGGTAGTTACAAACGTCAAAGTAAGAATTCTCTTTATGGCCATCCAATATTGTCCAGTGGAGTTTCTCTCCCATAACTTGGGACTGACTCGTCAGAGAACATAAAAATTGTAAAGACGATTGCAGTCTAATGGGCTGGTATTTGTTTGTTCCCAGATAAATATACACTCTTGCTGTCAGTTCTGCTCAGACATATTTATGTTGGAAAACCGGACAAATGTGTATCAACAAACTGTGCATTAACTGATCATGTAACAGTCTTCGCATTTAGAAAGTCGCATATTTTAGTTCATGAACTTTTTGGAGACTGATATTATCATCTTTTCTTAAAAAGACACCATGAATCCAGCAAAAGAAGGACGGCGATGCACATGAAAACATTGTGATACACCTAGCAATTACTAAAGtccttatttttaatatacagtaacaATTGGGATTAGCATGTTATCATCTTCAATACAACAAGAGTTGagagatttcattttaaagatgcaAATCAATTGCAACAATAGATGTGCCCACAGAATTGCATCCATTCGCGGATTACTGTCAGtgactttctactacttattaGTAACAATCTGATAGGGGACTTATGTGTAGTTTGTCATGTGttggtaggtcaaagttttgattggaTTTGTATGAGAttacacataaaacacagcCGTTTTGGATAGTTAGTACAAACCCTCTTTTTTCTCCTTAAAATACCTTTTAGCTGCACCAACCTCCAGATGAGTTCTGAAAGGTCTGAAATTATACTGGAAACCCCAGGTCACATCACACGCTCTCCTTAGTacatatttctttatataatgATTGTTTGGAGTACGAAAGTGTCACAAGGTCAGTGTTTTGGGCTGAGGTCTTGATGGGCATAGATTGCCCAGAGATTTCACCTCCAtaacaatatacagtacatgtaaATACCTTGCATGTTGCTTTTTGTGTTAGAGCTAGATGTTTTATGTCCTAACCTGTGCGTTAAACCACTACCTTCTGCTTTAAACGATCTCAACTGACGCAGCTCTCAGatataataatttgtaacatttttatatatatagagatatgcCTTGTTCAgtgtttatggttttatttatttgtaaacttgAAAGAAATGTATGGAGAAGCAAATGTCACTCTGCCTTTtaatgattattgtttttattttgtaagagtTATTGTAAAGCAGAGATATATACATGACTGTGTGATTATTCTTTAATTTGCATATTGAGCATAATCAGGATTTCTTTCAGTCATTCGTATCGCTgtcaacaaaaaatgtattctgccgATAAGCCACTGGTCttcattttctgtctgtttttgtcaTTGCAAAATGAGTAAAAGGTTGTAATTTCCCCTCCATAGTAAGTTAATTAGATGGCTTTATCCAAAGTGGAAATCTGGCTACAAATATACAATCGCCTGTATATTGTAAAGGTGGTTGTAACTATGGTTTCAAAAATGGCTCTTCTGACAGGTTTAaggagattatatatatatata

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0042802 identical protein binding molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K06771 MAG, GMA, SIGLEC4; myelin associated glycoprotein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015306 True 4361 mRNA 0.44 11 7462555 7473836

Neighbor

gene id symbol gene type direction distance location
AMCG00015302 NA coding upstream 75745 7383227 ~ 7386810 (+)
AMCG00015297 NA coding upstream 189300 7259542 ~ 7273255 (+)
AMCG00015298 NA coding upstream 284725 7175335 ~ 7177830 (+)
AMCG00015290 NA coding upstream 383084 7061902 ~ 7079471 (+)
AMCG00015292 NA coding upstream 421374 7033028 ~ 7041181 (+)
AMCG00015309 NA coding downstream 30695 7504531 ~ 7558297 (+)
AMCG00015307 NA coding downstream 86788 7560624 ~ 7564400 (+)
AMCG00015308 NA coding downstream 108216 7582052 ~ 7587325 (+)
AMCG00015311 NA coding downstream 225011 7698847 ~ 7708047 (+)
AMCG00015315 NA coding downstream 258573 7732409 ~ 7733197 (+)
G96992 NA non-coding upstream 97571 7364383 ~ 7364984 (+)
G96936 NA non-coding upstream 237217 7216640 ~ 7225338 (+)
G96915 NA non-coding upstream 316351 7145951 ~ 7146204 (+)
G96837 NA non-coding upstream 540914 6917806 ~ 6921641 (+)
G96767 NA non-coding upstream 759461 6701612 ~ 6703094 (+)
G97059 NA non-coding downstream 159545 7633381 ~ 7649307 (+)
G97071 NA non-coding downstream 180288 7654124 ~ 7654649 (+)
G97072 NA non-coding downstream 183140 7656976 ~ 7657282 (+)
G97118 NA non-coding downstream 298953 7772789 ~ 7773054 (+)
G97120 NA non-coding downstream 299437 7773273 ~ 7773477 (+)
G97006 NA other upstream 46793 7415369 ~ 7415762 (+)
AMCG00015293 NA other upstream 381767 6997597 ~ 7080788 (+)
AMCG00015277 NA other upstream 770756 6686351 ~ 6691799 (+)
G96420 NA other upstream 1997121 5426879 ~ 5465434 (+)
G96415 NA other upstream 2070832 5388937 ~ 5391723 (+)
AMCG00015324 esrra,LOC107669367,LOC107715365,LOC104926321,LOC106534575 other downstream 472372 7946208 ~ 7956114 (+)
AMCG00015334 NA other downstream 600345 8074181 ~ 8078832 (+)
AMCG00015343 gng3,LOC107559409 other downstream 650470 8124306 ~ 8126457 (+)
AMCG00015335 NA other downstream 673509 8147345 ~ 8149159 (+)
AMCG00015345 NA other downstream 723236 8197072 ~ 8201857 (+)

Expression


Co-expression Network