AMCG00015324 (esrra,LOC107669367,LOC107715365,LOC104926321,LOC106534575)


Basic Information

Item Value
gene id AMCG00015324
gene name esrra,LOC107669367,LOC107715365,LOC104926321,LOC106534575
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7946208 ~ 7956114 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015324
ATGTCCAGTCGAGATCGTCGCTCCGACCTGTACATTAAAGCTGAACCCTCCAGCCCCgagggggggggcgggggcggcGGCCGTCAGAGCCCAGGGGCCTCCTCAGACTCCAGCCACAGTGGCGGAGGGGGCGGCAGCGGGGGCGGGGGAGGAGGGACGGGACGTTACTCCCCCCCGCCCTACACCCCCCCGCTGCGCTGCCACTTcaaagaggagggggggggggcagaggagggggcggggggaggcGGGCGCTGTAAGTACGGCCTGAGCACCCTGCCCAAGCGCCTGTGTTTGGTGTGTGGAGACGTTGCCTCGGGGTACCACTACGGCGTGGCGTCATGTGAGGCCTGCAAAGCCTTCTTCAAAAGGACCATCCAGGGTAATATCGAGTACAGCTGCCCGGCGTCTAACGAGTGCGAGATAACAAAGCGACGCAGGAAGGCCTGTCAGGCCTGCCGCTTCACAAAGTGCCTGAAAGTGGGCATGCTCAAAGAGGGGGTGCGGCTGGACAGGGTCCGAGGAGGGAGACAGAAGTACAAGAGACGACCAGAGGTGGAGAGTGCGGCCTACCAGAGCCCCCCCAGCCTGCCGCTCAGGAAAGAGGGATCGTCCCACCTCATCGTGTCCCACCTGCTGGTGGCTGAGCCGGAGCCCCTGCTGGCGCTACCCGACCCGCTGCTGGAGGAGGGGGGCCTGCGCACCTTGAGCACGCTGTGTGACCTGGCCGACCGCCAGCTCGTCGTCATCATCGGCTGGGCCAAGCACATCCCcgGTttcctgtccctgtccctggcGGACCAGATGTCGGTGCTGCAGTCGGTGTGGCTGGAGGTGCTGGTGCTGGGCGTGGCGTGGCTGTCCGTGGGCAGTGAGGAGGAGGTGGTATTTGCGGAGGACCTGGTCCTGGACGCGCGGCGCAGCAGGCAGGCTGGCCTGTCGGACCTCAGCGCCGCCATCGCGCAGCTGGCCCGGCGGTACCGGGCCCTGGGGCTGGATCGTGAGGAGTACGTTCTGCTGAAGGCCATCGCGCTGACCAACTCCGactctgtGTACATTGAGGACGTGGAGGCAGTGCAGAAGCTGAGGGACCTGCTGCACCAGGCGCTGGCGGAGTACGAGTCCTCGCGGCGACCGGAGGAGCCACGGCGGGCGGGGCGGCTGCTGCTGACCCTGCCGCTGCTCAGACAGACCGCCGGCCGCGCCCTGATGGCCTTCCACTCCATCCGCAGCCAGGGGGGCGTCACCATGCACAAACTGTTCCTCGAGATGCTGGAGGCCATGATGGACTCTCCctgagagggtgggg
>TU121162
gcGGGCGCTGTAAGTACGGCCTGAGCACCCTGCCCAAGCGCCTGTGTTTGGTGTGTGGAGACGTTGCCTCGGGGTACCACTACGGCGTGGCGTCATGTGAGGCCTGCAAAGCCTTCTTCAAAAGGACCATCCAGGGTAATATCGAGTACAGCTGCCCGGCGTCTAACGAGTGCGAGATAACAAAGCGACGCAGGAAGGCCTGTCAGGCCTGCCGCTTCACAAAGTGCCTGAAAGTGGGCATGCTCAAAGAGGGGGTGCGGCTGGACAGGGTCCGAGGAGGGAGACAGAAGTACAAGAGACGACCAGAGGTGGAGAGTGCGGCCTACCAGAGCCCCCCCAGCCTGCCGCTCAGGAAAGAGGGATCGTCCCACCTCATCGTGTCCCACCTGCTGGTGGCTGAGCCGGAGCCCCTGCTGGCGCTACCCGACCCGCTGCTGGAGGAGGGGGGCCTGCGCACCTTGAGCACGCTGTGTGACCTGGCCGACCGCCAGCTCGTCGTCATCATCGGCTGGGCCAAGCACATCCCcgGTttcctgtccctgtccctggcGGACCAGATGTCGGTGCTGCAGTCGGTGTGGCTGGAGGTGCTGGTGCTGGGCGTGGCGTGGCTGTCCGTGGGCAGTGAGGAGGAGGTGGTATTTGCGGAGGACCTGGTCCTGGACGCGCGGCGCAGCAGGCAGGCTGGCCTGTCGGACCTCAGCGCCGCCATCGCGCAGCTGGCCCGGCGGTACCGGGCCCTGGGGCTGGATCGTGAGGAGTACGTTCTGCTGAAGGCCATCGCGCTGACCAACTCCGactctgtGTACATTGAGGACGTGGAGGCAGTGCAGAAGCTGAGGGACCTGCTGCACCAGGCGCTGGCGGAGTACGAGTCCTCGCGGCGACCGGAGGAGCCACGGCGGGCGGGGCGGCTGCTGCTGACCCTGCCGCTGCTCAGACAGACCGCCGGCCGCGCCCTGATGGCCTTCCACTCCATCCGCAGCCAGGGGGGCGTCACCATGCACAAACTGTTCCTCGAGATGCTGGAGGCCATGATGGA
>TU121164
AGTCAGCACCACGGAAGACGTGATAGTAGATACAAGAGTTTGAGAGGCGGCGAGGAGAGAAAGGATTGTCCAGCGGAGCGCCCAGCCCGTTTCCTCAGCCGGCATTAGAGCCAGGGAGAGCGGACGCGGCCACGGAGTCACCCCGCTCGGCAGCACGACCTTCACCGGAGCGGCACTGACCCGCCTCGGCGCCCCCGCTGACCGGGGCTGGACAGCACCGGCCCCCGCTGCAGCTGGACCGGCTTCTCGGCGATTCCgtgcgttttatttatttggattgtattgatgtttgtttgtttatttgtcgtTTTATTTTGACGTTTAAAGTCACGAGTGGGTGACAGGGGCGCTTGAGTGTTGTTGTCACACGGCGTCCCGGTGACAGctgggcgagagagagagacagcggcCGACACCGACCGGCCCTCGCTACACCGGCGCCTCCGTCGATGGTCGTACAGAGGCCGGGTCTGCCGATGGACAAAGTGTgacggacagacagagacagagagagagggagaaggagggaggacATCTGTAGCCACACTGCCCCagcacagagcgagagagagggtgagagggaaGGAGACTTTTACAAACACAGtGATGTCCAGTCGAGATCGTCGCTCCGACCTGTACATTAAAGCTGAACCCTCCAGCCCCgagggggggggcgggggcggcGGCCGTCAGAGCCCAGGGGCCTCCTCAGACTCCA

Function

symbol description
esrra Enables DNA-binding transcription factor activity. Acts upstream of or within cell migration involved in gastrulation; regulation of cartilage development; and transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including brain; head; mesoderm; muscle; and tail bud. Orthologous to human ESRRA (estrogen related receptor alpha).

NR:

description
PREDICTED: estrogen-related receptor gamma-like isoform X2

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08553 NR3B2, ESRRB; estrogen-related receptor beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015324 True 1309 mRNA 0.67 6 7950563 7956114
TU121162 False 1042 TUCP 0.66 6 7950810 7956094
TU121164 False 718 lncRNA 0.61 3 7946208 7950674

Neighbor

gene id symbol gene type direction distance location
AMCG00015323 ccdc85b,LOC102791751 coding upstream 44488 7901121 ~ 7901720 (+)
AMCG00015316 NA coding upstream 97205 7845592 ~ 7849003 (+)
AMCG00015322 NA coding upstream 111045 7830597 ~ 7835163 (+)
AMCG00015317 NA coding upstream 151253 7784533 ~ 7794955 (+)
AMCG00015312 NA coding upstream 177734 7759071 ~ 7768474 (+)
AMCG00015325 LOC106603145 coding downstream 8533 7964647 ~ 7970683 (+)
AMCG00015344 ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding downstream 258901 8215015 ~ 8224773 (+)
AMCG00015346 NA coding downstream 303059 8259173 ~ 8264168 (+)
AMCG00015357 NA coding downstream 416352 8372466 ~ 8381177 (+)
AMCG00015364 NA coding downstream 477369 8433483 ~ 8443894 (+)
G97172 NA non-coding upstream 15186 7920405 ~ 7931022 (+)
G97160 NA non-coding upstream 48831 7896205 ~ 7897377 (+)
G97157 NA non-coding upstream 53421 7888609 ~ 7892787 (+)
G97152 NA non-coding upstream 67895 7877440 ~ 7878313 (+)
G97133 NA non-coding upstream 126021 7819675 ~ 7820187 (+)
G97184 NA non-coding downstream 2541 7958655 ~ 7962088 (+)
G97206 NA non-coding downstream 95409 8051523 ~ 8054827 (+)
G97271 NA non-coding downstream 134981 8091095 ~ 8101765 (+)
G97265 cfl1,LOC105028071,LOC106604708,LOC106611761 non-coding downstream 140272 8096386 ~ 8173011 (+)
G97284 NA non-coding downstream 158802 8114916 ~ 8116552 (+)
G97006 NA other upstream 530446 7415369 ~ 7415762 (+)
AMCG00015293 NA other upstream 865420 6997597 ~ 7080788 (+)
AMCG00015277 NA other upstream 1254409 6686351 ~ 6691799 (+)
G96420 NA other upstream 2480774 5426879 ~ 5465434 (+)
G96415 NA other upstream 2554485 5388937 ~ 5391723 (+)
AMCG00015334 NA other downstream 118067 8074181 ~ 8078832 (+)
AMCG00015343 gng3,LOC107559409 other downstream 168192 8124306 ~ 8126457 (+)
AMCG00015335 NA other downstream 191231 8147345 ~ 8149159 (+)
AMCG00015345 NA other downstream 240958 8197072 ~ 8201857 (+)
G97343 NA other downstream 277310 8233424 ~ 8294330 (+)

Expression


Co-expression Network