AMCG00015328


Basic Information

Item Value
gene id AMCG00015328
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7939137 ~ 7941984 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015328
GCAgatgtatgtgtgagtgtgcatgtgtgtctctgACAGTGCGTTTGTGTGTCAAAAGTGTGTGCGTGAGTCTCAgtgtgtgttctctctctctctctctctcttcagggaGTTCGTCACTCCTAACAGTGCCCGTTGCTCCTATGGCTGCAAGAACCGTCGGATGAACaaaactctctccctccctctctccctcccttgtGTGAGACCTTAAACGGAGAATACAGCGCTTCTCCctctttttttaacataaacacctctctctcacacacacacacactggcactctctctcactccctctctctatccctctctctgtctctctttatatacacacacacatacacaacgaCAGACTTTAACTGAAGAAAACGGGACGATGTGAATCGACGGGGGAGCTTCGCCTGAACTTTGTTTCGCGGACACGGAAAATCCCCAAAGtggagtattttattttttcttgaggGAAAAGCATTCTTCGCTTTTTTTTACTTGCAGAGAAGGcacactgttattattattgctattatttacTATTATATGTACGAGGCAACTGCATTTGCGTCAAGGATTTAACTATCAGCTCGTCTGTGATCCGGGCGCCTCTCTACCGGCGAGCGCAGACGAGGCAGGTCGGTTCTGTTGAAGTTTGCGCTCAGGCTCGTCCAGATCGCGGGTTTTGTCAgctataatgatgatgatgatgatgatgatgatgatgatgtcgTCTCCTGTGTGCCAGTGCGTAAGTGTTTGGAAGTGATCCACAGGGAGCAGGACAACCACACTCCCGCACAGTCGCCACTCTCGTCAGGCAGGAATGTAACGTGTCGTCGTCGGTTtggcgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcctgTGCCTGAACTGGCCTCCACGGAGCCTCACAGGACTGGACTGcctgtgttttcattgtgttgagttgtgtgtgtgtgttccagaCTGTTGTTACGCCTGCGATATcaagtcagtcaatcagtgtatcagtgtgtttgACCTGAAGGCATGTCTTCAATGAAGGGATGAGTCAACTGATCAACCAGCCAATTAGCAAAACAGTCAATTAGCCAATCAAGAGCCAACCAGCAACCAGCCAACTGGACAACCAACCAAAGACAACCAACCAAAGACAACCAACCAAAAGCCAACTGACAACCAACCGAGAACAACCACCAACTGACtcataactgtgtgtgtgtttctcctttTTGGGATAGTTACCCACAATCCCCTGGGCTGGCCTGCGGGGAGCCatgctgtgcatgtgtgcgGCGTCCCGGCtgtccctgctgctgctgcccctgctgctgctgcccggGCCGGCCTGCGGCTACTCCACCTGCCAGTCCTTCGACCTGGAGGACTTCCGGGCCAAGCGCATCGAGGCGGTCCGGGGACAGATCCTCAGCAAACTGCGCATCCGCCAGCCACCAGACCCCCCGTACACACCCCCCCCTGCTGAGGTGCCCCCAGAGGTCATGCTGTTGTACAACAGCACACGCGAGCTGCTGCGGCAGCGGGGGGCGGTGGAGGCATGCGACCGGGAGAGCAGTGAGGAGGACTACTATGCCAAGGAGGTGCAGCGTGTGGACATGGTGCCCACCACCGCCAGCAACGACAGAATAGTGTGTAGCTCTGTGTTGCAGTGA

Function

GO:

id name namespace
GO:0021510 spinal cord development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015328 True 1675 mRNA 0.53 2 7939137 7941984

Neighbor

gene id symbol gene type direction distance location
AMCG00015330 mus81 coding downstream 17312 7915071 ~ 7921825 (-)
AMCG00015326 NA coding downstream 30211 7903578 ~ 7908926 (-)
AMCG00015327 NA coding downstream 41684 7888625 ~ 7897453 (-)
AMCG00015329 NA coding downstream 53201 7877434 ~ 7885936 (-)
AMCG00015319 NA coding downstream 77390 7857079 ~ 7861747 (-)
AMCG00015331 NA coding upstream 16982 7958966 ~ 7961889 (-)
AMCG00015332 LOC107559259 coding upstream 29880 7971864 ~ 7994682 (-)
AMCG00015342 NA coding upstream 167489 8109473 ~ 8113457 (-)
AMCG00015337 NA coding upstream 173463 8115447 ~ 8121854 (-)
AMCG00015338 NA coding upstream 184529 8126513 ~ 8131083 (-)
G97134 NA non-coding downstream 118948 7819804 ~ 7820189 (-)
G97130 NA non-coding downstream 123735 7814894 ~ 7815402 (-)
G97121 NA non-coding downstream 158539 7780392 ~ 7780598 (-)
G97041 NA non-coding downstream 319620 7497942 ~ 7619517 (-)
G96994 NA non-coding downstream 574138 7362385 ~ 7364999 (-)
G97221 NA non-coding upstream 27613 7969597 ~ 7970757 (-)
G97244 NA non-coding upstream 59502 8001486 ~ 8016073 (-)
G97395 NA non-coding upstream 126796 8068780 ~ 8069037 (-)
G97409 gng3,LOC107559409 non-coding upstream 182284 8124268 ~ 8126464 (-)
G97475 NA non-coding upstream 489939 8431923 ~ 8433316 (-)
G97125 NA other downstream 152695 7786087 ~ 7786442 (-)
AMCG00015305 NA other downstream 490843 7390889 ~ 7448294 (-)
AMCG00015288 NA other downstream 1015423 6917679 ~ 6923714 (-)
AMCG00015285 NA other downstream 1042710 6891235 ~ 6896427 (-)
AMCG00015283 NA other downstream 1061403 6870462 ~ 6877734 (-)
AMCG00015333 nxf1,LOC105897453,LOC108417053,LOC106603139 other upstream 128051 8070035 ~ 8091826 (-)
G97411 NA other upstream 189323 8131307 ~ 8134115 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other upstream 281215 8223199 ~ 8283629 (-)
AMCG00015361 NA other upstream 419630 8361614 ~ 8370031 (-)
G97455 mark2a,LOC107715377 other upstream 468003 8409987 ~ 8411882 (-)

Expression


Co-expression Network