AMCG00015334


Basic Information

Item Value
gene id AMCG00015334
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8074181 ~ 8078832 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015334
ATGACGATCCCCTGTGGGAAGAAGTACGACAAGACGTGGCTGCTGACTGCCCTGCAGGGCCTATGCACCGTGCCCTTCACCCCAGTACAGtatCACTATGAAGGGAACAAGGTGGTGTTCTATGTGGAGGACGCCACTACAGCCAACGCGCTGTGCAAAGTGTCACGAAAAATCACTGACACTGAGGGGTACAAGGTGTCAGTCATCATgcacccctcccccccgccTGCCAGCGTGCTGAACGAACTGAAGCCGGAGGACCTGGAGCACCTCAagcaatGTATGAGTAAGCGTTTTGATGCCTCCCAGCAAGCTCTGGATCTCAACAGCATTCGCACTGACCCAGacctGGTGTCTCAGAATATCGAGGTGATTCTGAACAGGAGGAGCTGCATGCAGGCCATCAATGACATCATCAAGCAGAACATCCCTGAGGTAACCCTTAGCAGCCAGCCAGCCACTGAACTGAACTTACTCTACAAACTGGATGAAGTGTCTGAGCTGGTGAGCAAAGTGCCCAACCTGAAGATCCTCAACCTCTCCAACAACGAGTTGAAGTCAGAGAGGGATCTGGACAAGGTGAAGGGCTTCAAGCTGGAGGAGGTGTGGCTGGAGCACAATCCCCTGTGCGACCACTTCAAAGACCAGCCGTCCTATATCAGGTCAGAGCgccagggagggagggagggagggagggagagagagagaattgagAGAATGCAGGTGTGGTGA
>TU121271
TACACCTTACGGTGGGAGGCCGAATCGCCGGGGTGACAATCACTACGACCGCAACCGGGGAGGCGGTGGCAACGCAGGGGGGCACCGCCCTGGCAGAGGCGGGCCCCCCCGAAAAAGCTGGTTCAAAATGACGATCCCCTGTGGGAAGAAGTACGACAAGACGTGGCTGCTGACTGCCCTGCAGGGCCTATGCACCGTGCCCTTCACCCCAGTACAGtatCACTATGAAGGGAACAAGGTGGTGTTCTATGTGGAGGACGCCACTACAGCCAACGCGCTGTGCAAAGTGTCACGAAAAATCACTGACACTGAGGGGTACAAGGTGTCAGTCATCATgcacccctcccccccgccTGCCAGCGTGCTGAACGAACTGAAGCCGGAGGACCTGGAGCACCTCAagcaatGTATGAGTAAGCGTTTTGATGCCTCCCAGCAAGCTCTGGATCTCAACAGCATTCGCACTGACCCAGacctGGTGTCTCAGAATATCGAGGTGATTCTGAACAGGAGGAGCTGCATGCAGGCCATCAATGACATCATCAAGCAGAACATCCCTGAGCTCCTCTCTCTCAACCTCGGCAACAACAGACTCTACAAACTGGATGAAGTGTCTGAGCTGGTGAGCAAAGTGCCCAACCTGAAGATCCTCAACCTCTCCAACAACGAGTTGAAGTCAGAGAGGGATCTGGACAAGGTGAAGGGCTTCAAGCTGGAGGAGGTGTGGCTGGAGCACAATCCCCTGTGCGACCACTTCAAAGACCAGCCGTCCTATATCA

Function

GO:

id name namespace
GO:0006406 mRNA export from nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015334 False 732 mRNA 0.54 8 8074308 8078832
TU121271 True 779 TUCP 0.56 8 8074181 8078761

Neighbor

gene id symbol gene type direction distance location
AMCG00015325 LOC106603145 coding upstream 103498 7964647 ~ 7970683 (+)
AMCG00015323 ccdc85b,LOC102791751 coding upstream 172461 7901121 ~ 7901720 (+)
AMCG00015316 NA coding upstream 225178 7845592 ~ 7849003 (+)
AMCG00015322 NA coding upstream 239018 7830597 ~ 7835163 (+)
AMCG00015317 NA coding upstream 279226 7784533 ~ 7794955 (+)
AMCG00015344 ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding downstream 136183 8215015 ~ 8224773 (+)
AMCG00015346 NA coding downstream 180341 8259173 ~ 8264168 (+)
AMCG00015357 NA coding downstream 293634 8372466 ~ 8381177 (+)
AMCG00015364 NA coding downstream 354651 8433483 ~ 8443894 (+)
AMCG00015369 sart1,LOC107568296 coding downstream 435881 8514713 ~ 8524559 (+)
G97206 NA non-coding upstream 19354 8051523 ~ 8054827 (+)
G97184 NA non-coding upstream 112093 7958655 ~ 7962088 (+)
G97172 NA non-coding upstream 143159 7920405 ~ 7931022 (+)
G97160 NA non-coding upstream 176804 7896205 ~ 7897377 (+)
G97157 NA non-coding upstream 181394 7888609 ~ 7892787 (+)
G97271 NA non-coding downstream 12263 8091095 ~ 8101765 (+)
G97265 cfl1,LOC105028071,LOC106604708,LOC106611761 non-coding downstream 17554 8096386 ~ 8173011 (+)
G97284 NA non-coding downstream 36084 8114916 ~ 8116552 (+)
G97293 NA non-coding downstream 47943 8126775 ~ 8128889 (+)
G97347 NA non-coding downstream 163945 8242777 ~ 8244987 (+)
AMCG00015324 esrra,LOC107669367,LOC107715365,LOC104926321,LOC106534575 other upstream 118067 7946208 ~ 7956114 (+)
G97006 NA other upstream 658419 7415369 ~ 7415762 (+)
AMCG00015293 NA other upstream 993393 6997597 ~ 7080788 (+)
AMCG00015277 NA other upstream 1382382 6686351 ~ 6691799 (+)
G96420 NA other upstream 2608747 5426879 ~ 5465434 (+)
AMCG00015343 gng3,LOC107559409 other downstream 45474 8124306 ~ 8126457 (+)
AMCG00015335 NA other downstream 68513 8147345 ~ 8149159 (+)
AMCG00015345 NA other downstream 118240 8197072 ~ 8201857 (+)
G97343 NA other downstream 154592 8233424 ~ 8294330 (+)
AMCG00015356 NA other downstream 210138 8288970 ~ 8293681 (+)

Expression


Co-expression Network