AMCG00015337



Basic Information


Item Value
gene id AMCG00015337
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8115447 ~ 8121854 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00015337
CGGAGGAAGGAAGGGGAAGGTGTGTCCTAGCGGGGCTGCCGTTGTTGCAGTCCTCCCCGGACGTCATCGGGAAGCGACGGGTGTAGTTGTTTCGAGGTTGGTGTCGTCGCTCTCGCCGTCGCCGTTGATAAATAACAGAGAGCTCGAAGTTGGGCAGTTTTTAATGCGGACCCAGAAGCCGGTGCGGTCATAGCATCTGTCACtgcagggagagacagaggagactcagagagacacacagagagagggctTTCAAAACCGACTAATCCTAACATCTGGTCCTGCTACCCTACATTTTTGATCGCCTCAGAaaacaggaagaggaggaggagccttCTTCAGTGGCCACACCCCAACAATACCacaggacattttaaaaattcccTTTGGTTGCTGTGCCGACACTCTGGCCAATAGGGACGTACAATACTGCGGTGTCCTGCAGGGCGTTTTGCCCAGGGCTCCCTCTCCTGGTGCCAGTGGAGTATTGCGCCTGATGGACTCACTGTAGTGCACTATCCAGTCAGCCAGTTTCTGGGCTGTGATTTAAACCCCAACCAGTAAAACAAGACACATTCTGGAGATGAGTATGGGCAGTGTGCTGGGCCCAGTGCTGGTGTGGGTGCAGGAGGTGGCAGGGGTGTGGGTGCTGCGGGCGCGGCGCACTGTGCTACAGGCCGCAGTGCTGGTCTGtgtgctggtgctgctgctctGGGTGCTGATGTATGGACAGCCATACCGCGTTGCGCTGGCCCTGGAGCTGCCTGAGTCTCTGGAGAACAAGGCGTTGGGCATGTTCCTGGTGCGCCTGTCCTGCTACACCCTGGGCGGGCAGGTCACCTCCACCGTCTCCCGCTCTGCGATGCTGCGCTACCACTCTGGCCTGCTGGAGACGCTGTCCACTCTGACCCTGTCCCCCCTGCTGCTGTCCGGCATCTCTGAGCAGAAGCAGCTGCTGGAGGTGGAGCTGCACTCCGACTACAGGGAGGACTCGtATGTGCCGACCATCGGGGCTCTGGTGGAGATCCATTCTCGCAGGATCCAGATCTACTCTGCACAACTGCGCATCCATGCACACTTCACTGGCATTCGatacCTACTGTATAATTTCCCAATGACATCTGCAGTGATTGGAGTTGCCAGTAACTTTGCGTTCCTCAGTGTCATCGTGCTGTTCAGCTACCTGCAGTTCATCTGGGGGGGCCTGTGGCCTCCGGAGCACATCCGCGTCAGGatGACAATGGGTGACCGCTCTCGGCTGCAGCAGAGGAGGGAAGAGACTCGGAGACGCATGGAAATATCTAGCACACAGGCCCCGCCCACAGAGACAGGAAGTGAGATCACGGCAGGCGCTGGGGAAGGACCCTCAGGGCTGTCCAGCTCAGAGCGCCAGCAGGAAAAAGATGACTTGGATGCAGTGAGAGACGACGCACTGGAGACGATCGGCTCCCTGAGCGCCTCCCCCAACCTGCAGCACCCCTACTCTGtgtcggAGTCTTCCTCAGAGGATCCCCCTGAGCTTCTGGAGGCTCCAGACTTTGTGGAGGCCAGTGTCTcggaggagctggagctgcagcCCGTGGAGCCCCCCCTGCCCGACACCGCTCTCCGCCAGCGGACCGGCCCCTGCCAGCGGACTGGCCCCTGCCAGAGCTCTTGAACACATGGACAcatgccaacacacacactcacacacacacacacacagacactcacagagagacacacacactagtgCTGGGACATTATTGTGAATTTCAGCATTAAACTCTGTGCCTTTTAcgccctctctcacacacacagggtggAGGGGTCAGCTGGGTCTCAGACTGTAGTTTCCATGGCTACCTTCTTATGTCTTCAGTGTTCTCTGTTCATGATtttgcatatacatttaaatatataatatatacacagtgtgtagtagagcagtgctgttacaataggagGCTGTGCTGTAGTAGCAGTGTAGTAGCacagtgctgttacagtaggaGGTTGTGCTGTAGTAGCAGTATAGTAGCACAGttctgttacaatagggggctgtgcTGTAGTATCTGTGTAGTAGCACAGTGCACTTACAGTTACCACAGCACAGCCCTGCCACTGCAGTGAGTGGGGGCAGTAGT

Function


GO: NA

KEGG:

id description
K19365 BSCL2; seipin

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00015337 True 2132 mRNA 0.56 11 8115447 8121854

Neighbor


gene id symbol gene type direction distance location
AMCG00015342 NA coding downstream 1990 8109473 ~ 8113457 (-)
AMCG00015332 LOC107559259 coding downstream 120765 7971864 ~ 7994682 (-)
AMCG00015331 NA coding downstream 153558 7958966 ~ 7961889 (-)
AMCG00015328 NA coding downstream 173463 7939137 ~ 7941984 (-)
AMCG00015330 mus81 coding downstream 193622 7915071 ~ 7921825 (-)
AMCG00015338 NA coding upstream 4659 8126513 ~ 8131083 (-)
AMCG00015336 NA coding upstream 12435 8134289 ~ 8143347 (-)
AMCG00015341 NA coding upstream 22645 8144499 ~ 8146914 (-)
AMCG00015340 ovol1,LOC108267728,LOC103038355,LOC108434587,LOC107595316,LOC105029478,LOC107675488 coding upstream 29605 8151459 ~ 8157408 (-)
AMCG00015339 LOC106604708,LOC105028071,LOC106611761 coding upstream 44556 8166410 ~ 8174682 (-)
G97395 NA non-coding downstream 46410 8068780 ~ 8069037 (-)
G97244 NA non-coding downstream 99374 8001486 ~ 8016073 (-)
G97221 NA non-coding downstream 144690 7969597 ~ 7970757 (-)
G97134 NA non-coding downstream 295258 7819804 ~ 7820189 (-)
G97130 NA non-coding downstream 300045 7814894 ~ 7815402 (-)
G97409 gng3,LOC107559409 non-coding upstream 2414 8124268 ~ 8126464 (-)
G97475 NA non-coding upstream 310069 8431923 ~ 8433316 (-)
G97536 NA non-coding upstream 474881 8596735 ~ 8598299 (-)
G97561 NA non-coding upstream 489093 8610947 ~ 8611396 (-)
G97562 NA non-coding upstream 490641 8612495 ~ 8634660 (-)
AMCG00015333 nxf1,LOC105897453,LOC108417053,LOC106603139 other downstream 23621 8070035 ~ 8091826 (-)
G97125 NA other downstream 329005 7786087 ~ 7786442 (-)
AMCG00015305 NA other downstream 667153 7390889 ~ 7448294 (-)
AMCG00015288 NA other downstream 1191733 6917679 ~ 6923714 (-)
AMCG00015285 NA other downstream 1219020 6891235 ~ 6896427 (-)
G97411 NA other upstream 9453 8131307 ~ 8134115 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other upstream 101345 8223199 ~ 8283629 (-)
AMCG00015361 NA other upstream 239760 8361614 ~ 8370031 (-)
G97455 mark2a,LOC107715377 other upstream 288133 8409987 ~ 8411882 (-)
AMCG00015374 NA other upstream 419334 8541188 ~ 8545795 (-)

Expression



Co-expression Network