AMCG00015338


Basic Information

Item Value
gene id AMCG00015338
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8126513 ~ 8131083 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015338
ATGTCGGCGTGTAGTAGGGTGTCTAACGGTGCAGGCGAGGCGTCTTTGAACGGAGAACCGGCCCCCAAACGCTGCCGGGAGAGCGGGGAGGCTCCGGCCTGTACACCGGCGGAGCCTCGGAATAAAGTGACGGTGGTGCTGGGCGCGCACGGCGTGCTCAACAAGAAAGCCATCTCCTTCATCGGGAACGGGGTTGTGATCCACCTGCCAGGGCTGTTTGAGGAGGCTGAGAAAAACCTGCAGAAAGGCAAAGggctccAGGGCTGGGAAGAGCGGCTGAAGATTTCTGACCGCGCTCACATcgTGTTTAATTTCCACCAGGCTGTCGATGGGATCCAGGAGCAGCAGAGACAACAGCAGGCTGGGAAGAAtctgGGCACTACCAAGAAGGGCATCGGCCCAGCCTACTCCTCCAAGGCAGCCCGCAATGGCCTGAGAATCTGTGACCTCATCGCTGACTTCAGCACCTTCAGTAACAAGTTTCGGGTGCTAGCAGGGCAGTTCCAGGAGATGTACCCCTCCCTCAGCATCAAtgtggaggaggagctggagcagctAAGGgGCTATGTGGAGCGGCTGCGCCCCCTGGTGACAGATGGGGTGTACTTTCTGCACAGCCACCTGCAGGGCCCCCCCCGCAAGATCCTGGTGGAAGGGGCTAACGCTGCCCTGTTGGACATTGACTTCGGGACGTACCCATTCGTGACGAGCTCCAACTGCACTGTGGGCGGGGTGTGCACGGGTCTGGGCATTTCCCCGCGTCACGTGGGCTGCGTGTACGGCGTGGTGAAGGCCTACAGCACACGTGTGGGCGTCGGCGCCTTCCCCACAGAACAGGACAATGAGCTGGGGTCTCTGCTGCAGTCCCGGGGCAGTGAGGTGGGCGTGACGACGGGCCGGCGGCGCCGCTGTGGCTGGCTAGACCTGGTGCTGGTTAAATACGCTCACATGATCAACGGCTTCACCgcccTCGCTCTGACCAAGCTGGACATTCTGGATACGCTGGAGGAGATCAAAAGATATGTGCACTTCATCGAGGACTACTTGCAGGTGCCAGTGAAGTGGGTCGGCGTGGGGAAGGCCAGGGAGTGCATGATCAAGCTGTGCTGAACCGACCTGACctgaggagaggggagagaggagaggggagagaaacaGCTTCAAAACACCAGCAATTTCcaaatgagagggagagagtgtgtgtgagtgagtgtcaaGGATAGCGATTTATGAGAGTGTCtttgcatgtgcatgtgtgtagaGCACCAACGCACTAGGActacacaaacgcacacacctAGGTGACACAGACACGCCTGGATGCCAGTTAACTCGCTTACCTAATTAGCGCACTTGTTGAGGGTGGTCTCTTCAGggcagattttaattttttttttattatgtcacACACCGATGCAAGGAGAGTAGTCCCTGCCTGAGCTGGGGACAGCATCTGCTCTGACAGATGAacattatatttctgtatttgtgtctGATGTATGTACAGTAATCCCTCTCCACCTGTTTATGGGTCACGTTCTTGAAAACCCCCGTGGTCTGTAAACGCTAGAGCTCATGGGAAAAGGGGTTTAGGTTCCCCATGGCCGCGGATGCATTTCTCGAAGCCGGAAGCTGCATTTTCCTCCACTATTCACAAATTAATAACACTGTAACATTAAAATCATGCAATACTGTAACATACTGGGTAATGTAACATGTGCAAAGCAATACAGTGAtaagtaatgttttatttagtcaTTGAATGTTTAGGGGCTatgatttaaacacaaatactaCTACAAAATCACAATTACGCCCAGTGGACCCGGAGCAAACGAGACTGCATGGGCACACGACCGTGACCAGTACGGGAGACGCAGCCAGAGAGGATCTTTGGAGGGGGAGAGGCTAGCTGTGTGATGCGTTACCGTGTAAAACTGTATACACAGATCTGCTATGGTTGGCAAATTGGTACACAAAAGTAAAACCGTTGATGTATGAATTTCACTGCTGGCAGTTGGTGAGGgatttctgtatgtgtgtctatataatAATTGGAAATGCAGTGACAAAGCAGGAATACACTGCAACAGACAGACCATGTGTGCATGTTGGGGGGCCAGCTCTTTCTTGTACTACCACCTCTGAATTAAAGCCAGTGTGTTCATGGAAAGctgttgtgtctgtgtatttattcagcagctctgtgggagagagagagtgtggagCACAGAGGCATACTAcggcactgacacactgactgacatactgcagcactgacacactacAGCACTCACACGCTGCCTGgctaacacactgactgaccctggctctgtgtgtgtgtgcaatgagCTGTGCAgtaacacacgcacacacaggacAATAGTGTGATAACagctctgtttattattatggtcTGGTATCATTCACCCCCA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015338 True 2435 mRNA 0.53 13 8126513 8131083

Neighbor

gene id symbol gene type direction distance location
AMCG00015337 NA coding downstream 4659 8115447 ~ 8121854 (-)
AMCG00015342 NA coding downstream 13056 8109473 ~ 8113457 (-)
AMCG00015332 LOC107559259 coding downstream 131831 7971864 ~ 7994682 (-)
AMCG00015331 NA coding downstream 164624 7958966 ~ 7961889 (-)
AMCG00015328 NA coding downstream 184529 7939137 ~ 7941984 (-)
AMCG00015336 NA coding upstream 3206 8134289 ~ 8143347 (-)
AMCG00015341 NA coding upstream 13416 8144499 ~ 8146914 (-)
AMCG00015340 ovol1,LOC108267728,LOC103038355,LOC108434587,LOC107595316,LOC105029478,LOC107675488 coding upstream 20376 8151459 ~ 8157408 (-)
AMCG00015339 LOC106604708,LOC105028071,LOC106611761 coding upstream 35327 8166410 ~ 8174682 (-)
AMCG00015352 NA coding upstream 46360 8177443 ~ 8190434 (-)
G97409 gng3,LOC107559409 non-coding downstream 49 8124268 ~ 8126464 (-)
G97395 NA non-coding downstream 57476 8068780 ~ 8069037 (-)
G97244 NA non-coding downstream 110440 8001486 ~ 8016073 (-)
G97221 NA non-coding downstream 155756 7969597 ~ 7970757 (-)
G97134 NA non-coding downstream 306324 7819804 ~ 7820189 (-)
G97475 NA non-coding upstream 300840 8431923 ~ 8433316 (-)
G97536 NA non-coding upstream 465652 8596735 ~ 8598299 (-)
G97561 NA non-coding upstream 479864 8610947 ~ 8611396 (-)
G97562 NA non-coding upstream 481412 8612495 ~ 8634660 (-)
G97574 NA non-coding upstream 524090 8655173 ~ 8656821 (-)
AMCG00015333 nxf1,LOC105897453,LOC108417053,LOC106603139 other downstream 34687 8070035 ~ 8091826 (-)
G97125 NA other downstream 340071 7786087 ~ 7786442 (-)
AMCG00015305 NA other downstream 678219 7390889 ~ 7448294 (-)
AMCG00015288 NA other downstream 1202799 6917679 ~ 6923714 (-)
AMCG00015285 NA other downstream 1230086 6891235 ~ 6896427 (-)
G97411 NA other upstream 224 8131307 ~ 8134115 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other upstream 92116 8223199 ~ 8283629 (-)
AMCG00015361 NA other upstream 230531 8361614 ~ 8370031 (-)
G97455 mark2a,LOC107715377 other upstream 278904 8409987 ~ 8411882 (-)
AMCG00015374 NA other upstream 410105 8541188 ~ 8545795 (-)

Expression


Co-expression Network