AMCG00015344 (ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151)


Basic Information

Item Value
gene id AMCG00015344
gene name ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8215015 ~ 8224773 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015344
GGGCGGCGGAGTACtttgattattaattaaaatacagtaaactaTCCCTTATTTATCCGACAGGAGAACCACCAAGACAAACAGCGTGGACATTCAATTCCACAAGAgacaaaaccaagaaaacaaaacccccaCAGACAGACCGCTATCTGGCCACCCTCGGAGAGAAGGCGCTAGAAAGACGGCAAACTTCAGAAACACGCCCGAGTGCCAGACAGCGCGACGGAAACCTCAGCGGAGGGCAAAGCCGGACAAACCGCCGACCACCGCGCAGCGCCGCACAGACGACCCCCCGCCCCGGTGAAAGCACAGCCGACAACATGTTCAGCTGGTCGACCAAGGATGGGAAGCGCAAGAAAGACCCGGAGCTCTTCCAGACGGTGTCGGACGGGCTGCGGCGGCTCTACCGGAACAAGCTGTTCCCGCTGGAGGACACCTACCGCTTCCACGACTTCCACTCCCCGGCGCTGGAGGACGCCGACTTCGACAACAAGCCCATGGTGCTGCTCGTCGGGCAGTACTCCACCGGCAAGACCACCTTCATCCGCCACCTCATGGAGCAGGACTTCCCCGGCATGCGCATCGGGCCCGAGCCCACCACCGACTCGTTCATCGCGGTGATGCACGGCGAGCAGGAGGGGGTGGTGCCCGGCAACGCGCTGGTGGTGGACCCCAAAAAGCCCTTTCGCAAACTCAACGCCTTCGGCAACGCCTTCCTCAACAGgTTCATGTGTGCCCAGATGCCCAACCCAGTGCTGGAGAGCATCAGCATCATCGACACCCCGGGTATCCTGTcgggagagaaacagaggatCAGCCGAGGGAAGTGCCAGAATGACCTGTTGGGTCAGGAGTATCATACAGAGTGGCACAATACTATCCAGCCCAGGCCAATAGAGCAGCACAGCGCTATGGTTACATTGGGCTCAGCAGCTGTAATGGTGAAGGCAGGCTATGACTTCGCGGCGGTGCTGGAGTGGTTCGCGGAGCGGGTGGACCGCATCATCCTGCTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCTGAGGTCATCCGGGCCCTGAAGAACCATGAGGACAAGATGCGCGTGGTGCTGAACAAGGCCGACCAGATCGAGACCCAGCAGCTGATGCGGGTCTACGGGGCCCTTATGTGGTCGCTGGGCAAGATCGTGAACACGCCCGAGGTGGTGCGCGTCTATATCGGCTCCTTCTGGGCGCAGCCGCTGCTGGTGCCCGACAACCGCAAGCTGTTTGAGGCCGAGGAGCAGGACCTTTTCCGGGACATCCAGGGGCTGCCGCGCAACGCTGCCTTGCGCAAGCTCAATGACCTGATCAAGAGGGCGCGGCTCGCCAAGGTCCATGCTTACATCATCAGCTCCCTGAAGAAGGAGATGCCCAATGTCTTCGGCAAGGAGAACAAGAAGAAGGAGCTGATCGCCAACCTGGGCGAGATCTACCTGAAGATCGAGAAGGAGCACCAGATCTCCCCAGGGGACTTCCCCAACCTCAAGAAGATGCAGGAGCTGCTGGCTGTGCAGGACTTCACTAAGTTCCAGACGCTGAAGCCGAAGCTGTTGGACAACGTGGAGGATATGCTGGCCCAGGACATCTCGCGGCTGATGACCATGGTGCGCCAGGAGGAGGCCGCCATGCCCAGCCAGGTGGTCAAGGGCGGCGCCTTCGAGGGCACCATGAATGGGCCCTTCGGCCATGGCTATGGAGAGGGCGCGGGCGAGGGCAtcgatgagctggagtgggtggtGGGCAAGGACAAGCCCACCTACGATGAGATCTTCTACACCCTGTCCCCGGTCAACGGCAAGGTGTCAGGCGCCAGCGCCAAGAAGGAGATGGTCAAGTCCAAGCTGCCCAACACGGTGCTGGGCAAGATCTGGAAGCTGGCGGACGTGGACCACGACGGGTACTTGGACGACGAGGAGTTCGCCCTGGCCAACCACCTGATCAAGGTGAAGCTGGAGGGGCATGAGCTGCCCGCCGACTTGCCTGCCCACCTGATACCGCCCTCCAAGCGTGGCGGGGGAGGGCAGCTGGAGTgAGAGAGGCAATGGGGGTGTGAGtgaatggagagggagaggaagagtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgagtgagtgagagCAAGCAggggaggaagaaagagagggtagttgggtgtgtgtgtgtgtgtgtgcggttaCTAAACAAATTCACAAGTTGGGGGGGAGTTGGGAAGTGTTGGGCAGGAGGAGGGTCGGGGCGGGGGGTGCTAACCGACACTACAAATCAGATTAAAACCCAACTCAAGAGCAGGACTGACACCCCTGTGAgccaggaagaggaggagccaATGCAGCCACCCCTGGCCCCGCCCATTCAGCCTGGTCAATTGTGCCTGTATGTTCTCCTTTTCGATTTTATTGGCCGATCCAATTTCATTTCCGTCTTCTGTGAGAGAGGAGTCctgtttgttcttgttcttgttttattatattttcaattttccttCCTGTTTCCATCACACTAACGGGAAGGGTGCtactgcagtgcattgtgggataggCAGCAGGATCCCCCTCCCTCACCTGGCTGTCTACCAGTCCAACTGGTGTGGTTCCCGCTAATGACATGGCCGGCCATCAACCTCATTCTAACCACTGTGACATCATCAACCAGCGCCAAGCACAGAGGACAGATCGCAGCACAGGTTGGCACAGTCACGCTGCCGCCTGTAGCACAGAGAGACTGGGAGAGGGCCTGGGAGTCTGTTGGCGCTGGGCTTGCTGTGTCTCGACTCTGGGCTGGGCCGTACAGTTTGAGGGGGGTGGTTAACCCCTGCGGGACTGAAGGACAGACTGGTATACATGATTGTATGTCGttatatatagagatagatatatagagagataaaATGTGAAAGGTAGGACTGAGAGGTGTGCTGTCAAGCTCAGTTTcatcattgtgtttttcatttgaaatgggtTCATTCCTCTGAActctccagggccagggctggagaccctgttTTATATCTTGACA

Function

symbol description
ehd1b Predicted to enable ATP binding activity; GTP binding activity; and calcium ion binding activity. Involved in cilium assembly. Predicted to be located in endosome and membrane. Predicted to be active in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Is expressed in several structures, including cardiovascular system; mesoderm; musculature system; pronephric duct; and sensory system. Orthologous to human EHD1 (EH domain containing 1).

NR:

description
EH domain-containing protein 1

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K12483 EHD1; EH domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015344 True 3049 mRNA 0.58 7 8215015 8224773

Neighbor

gene id symbol gene type direction distance location
AMCG00015325 LOC106603145 coding upstream 244332 7964647 ~ 7970683 (+)
AMCG00015323 ccdc85b,LOC102791751 coding upstream 313295 7901121 ~ 7901720 (+)
AMCG00015316 NA coding upstream 366012 7845592 ~ 7849003 (+)
AMCG00015322 NA coding upstream 379852 7830597 ~ 7835163 (+)
AMCG00015317 NA coding upstream 420060 7784533 ~ 7794955 (+)
AMCG00015346 NA coding downstream 34400 8259173 ~ 8264168 (+)
AMCG00015357 NA coding downstream 147693 8372466 ~ 8381177 (+)
AMCG00015364 NA coding downstream 208710 8433483 ~ 8443894 (+)
AMCG00015369 sart1,LOC107568296 coding downstream 289940 8514713 ~ 8524559 (+)
AMCG00015370 LOC102776143 coding downstream 328025 8552798 ~ 8572065 (+)
G97265 cfl1,LOC105028071,LOC106604708,LOC106611761 non-coding upstream 42004 8096386 ~ 8173011 (+)
G97293 NA non-coding upstream 86126 8126775 ~ 8128889 (+)
G97284 NA non-coding upstream 98463 8114916 ~ 8116552 (+)
G97271 NA non-coding upstream 113250 8091095 ~ 8101765 (+)
G97206 NA non-coding upstream 160188 8051523 ~ 8054827 (+)
G97347 NA non-coding downstream 18004 8242777 ~ 8244987 (+)
G97350 NA non-coding downstream 23338 8248111 ~ 8250285 (+)
G97383 NA non-coding downstream 252449 8477222 ~ 8480537 (+)
G97543 NA non-coding downstream 388482 8613255 ~ 8616320 (+)
G97547 NA non-coding downstream 399316 8624089 ~ 8624687 (+)
AMCG00015345 NA other upstream 13158 8197072 ~ 8201857 (+)
AMCG00015335 NA other upstream 65856 8147345 ~ 8149159 (+)
AMCG00015343 gng3,LOC107559409 other upstream 88558 8124306 ~ 8126457 (+)
AMCG00015334 NA other upstream 136183 8074181 ~ 8078832 (+)
AMCG00015324 esrra,LOC107669367,LOC107715365,LOC104926321,LOC106534575 other upstream 258901 7946208 ~ 7956114 (+)
G97343 NA other downstream 8651 8233424 ~ 8294330 (+)
AMCG00015356 NA other downstream 64197 8288970 ~ 8293681 (+)
AMCG00015358 NA other downstream 70314 8295087 ~ 8303048 (+)
AMCG00015362 NA other downstream 78612 8303385 ~ 8305677 (+)
AMCG00015359 NA other downstream 82807 8307580 ~ 8312199 (+)

Expression


Co-expression Network