AMCG00015345


Basic Information

Item Value
gene id AMCG00015345
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8197072 ~ 8201857 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015345
ATGGAGCCCGAATCGGAATCTCCTTCAACCCTGTGcccctgccctccctccctccctccctgtggGCGGGGGCGGGGCTGTGATGAGGATCTGACCTGCCTGAGCTGGCTGCACCAGAGCACTGACCTGCTGAGGGAGCTGCGTCTGGGGCCcggggagagggaggcagggagcggggggcaggagggggagggagaggagcaggGCGGAGGGAGGGGGGGGCCTCACCCAGCCTTGGCCACCTCCTCCCTCGCTCCCCCCGCCCCGGCCACCGGCAGCCCCCCCAAGCCACCCTACTCCTTCAGCAGCCTTATCTTCATGGCCTTAGAGGACTCCCCAGGCAAGAGGCTGCCAGTGAAGGCCATCTATGACTGGATCCTCTCTACCTTCCCCTACTACCGCAGCGCCCCCTCTGGCTGGAGGAACTCGGTGCGCCACAACCTGTCACTCAGCAAGTGCTTCCACAGGATGGGAAGAGACAAGAGCCGGGGCGCAGGGAAGGGCTCTCTGTGGTGTGTACACCCTGAGTACAGACCAGCCCTACTGGAGAGCCTGAGGAAGACACACTGCCACACCAGCCCCCCACTGTCAGAGGTCATCGTTCCGGAAGCAGTCATCTACGACCCAGACAGTGTGGAGTACACGGAGGACCCCTCCCCCTGGCTGGGGCTGTGCCCTCTGAGTGCCGACCTCGGCGACGAGCACAACTACAGCGGTCTCTTCCGGCTGGCCGCCTGCCTGGCTGGGGCGGGGGGCGTGGCCCTGCAGGTGGAGGTGGGCGTGTCCGAGGAGCTGGTTGCGATGGACACcatggagctggagctggaggaggagaaggaccCTTTGACGGACAGCGGCTACATCGAATACCACGAGTTCCTGCTTCTGCCCGGGGGAGGTCCTGAGGAGGAGGGCGGGGAGATGGGCGAGGTCACCGTGCTGCAGCTGGACCAGGAGGTGCAGGAGGCGGCCGGCattcaccctctctctctggagggagagaagcagagagaaatgcagggagggaaggaggaagagaaaagcTTCCGACACAAACGCACAAAGCCAGCGCACTGCCAGACGACTGTATTGTCACTGTTATCACCATGCTTACTGCTGCTCTGTGGGATGGGGACCACCCTACAGAATGAACTCTAA
>TU121334
aacagagggagaaagagaggtcAATCCCTCGTTCGTTTCATCAACAATTCTGGACCCCGCTAAGGTGTGAAATCTTCCCAGACGCAGTGgcgctgagagagagggaaagacggagagagagagagggcgagaaTTTCACCCTGCAAAACCAATGGAGCCCGAATCGGAATCTCCTTCAACCCTGTGcccctgccctccctccctccctccctgtggGCGGGGGCGGGGCTGTGATGAGGATCTGACCTGCCTGAGCTGGCTGCACCAGAGCACTGACCTGCTGAGGGAGCTGCGTCTGGGGCCc
>TU121336
tCCAGTCcacaatttcaatattttattcttccTTTTTACACAATGTaccaaaagagaaagaaaatcccCAGGGGGTTGGAAGTCAAGAGCAGCCCGGTCCCTGATTTCCAACCCGCattttgattataattatgactattttcattttgttttacttatttttgattgttttgtaaatatatctgtattacTAACTCTTCCCACACTTGAGCTGTCCTGCCCCTTCCCAGCattcaccctctctctctggagggagagaagcagagagaaatgcagggagggaaggaggaagagaaaagcTTCCGACACAAACGCACAAAGCCAGCGCACTGCCAGACGACTGTATTGTCACTGTTATCACCATGCTTACTGCTGCTCTGTGGGATGGGGACCACCCTACAGAATGAACTCTAATAAACTCTTACAGATCAGATCCACACTGCTGTCTAGTCCATCTCTCTGTATGTCTGGGGTCAGACAGAGTGTCCTCCATAGTAAGGTCAAGGGGGTCGAGGGgtcaggggtcagagcGTGCGGTACGCCCCCACCGTGACGTCGAACAGCCGTGGGTTCGCCAGCCGGCCCTGTCTGTCCAGAAGATAGTAGAGGGAGTGACCTTTGATACGCAGGGGGATGTGGGCAGCGACCTCGCTGCGGTGGGCATGGCAGGTCACCTGACTGAGCGGCACACTGAAGCTCCGTCCCCCCACCAGGGCATGGGTCACCACAGTGACCTGCTGCCCCCCTCGCTTCAGGACCACACTGCGGACACAGCGCCGAGAGAAGAGCAGCGAGACGGACACCATCACACTgcctgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015345 True 1158 mRNA 0.64 5 8198321 8201394
TU121334 False 304 lncRNA 0.60 2 8197072 8198473
TU121336 False 819 lncRNA 0.52 2 8200981 8201857

Neighbor

gene id symbol gene type direction distance location
AMCG00015325 LOC106603145 coding upstream 226389 7964647 ~ 7970683 (+)
AMCG00015323 ccdc85b,LOC102791751 coding upstream 295352 7901121 ~ 7901720 (+)
AMCG00015316 NA coding upstream 348069 7845592 ~ 7849003 (+)
AMCG00015322 NA coding upstream 361909 7830597 ~ 7835163 (+)
AMCG00015317 NA coding upstream 402117 7784533 ~ 7794955 (+)
AMCG00015344 ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding downstream 13158 8215015 ~ 8224773 (+)
AMCG00015346 NA coding downstream 57316 8259173 ~ 8264168 (+)
AMCG00015357 NA coding downstream 170609 8372466 ~ 8381177 (+)
AMCG00015364 NA coding downstream 231626 8433483 ~ 8443894 (+)
AMCG00015369 sart1,LOC107568296 coding downstream 312856 8514713 ~ 8524559 (+)
G97265 cfl1,LOC105028071,LOC106604708,LOC106611761 non-coding upstream 24061 8096386 ~ 8173011 (+)
G97293 NA non-coding upstream 68183 8126775 ~ 8128889 (+)
G97284 NA non-coding upstream 80520 8114916 ~ 8116552 (+)
G97271 NA non-coding upstream 95307 8091095 ~ 8101765 (+)
G97206 NA non-coding upstream 142245 8051523 ~ 8054827 (+)
G97347 NA non-coding downstream 40920 8242777 ~ 8244987 (+)
G97350 NA non-coding downstream 46254 8248111 ~ 8250285 (+)
G97383 NA non-coding downstream 275365 8477222 ~ 8480537 (+)
G97543 NA non-coding downstream 411398 8613255 ~ 8616320 (+)
G97547 NA non-coding downstream 422232 8624089 ~ 8624687 (+)
AMCG00015335 NA other upstream 47913 8147345 ~ 8149159 (+)
AMCG00015343 gng3,LOC107559409 other upstream 70615 8124306 ~ 8126457 (+)
AMCG00015334 NA other upstream 118240 8074181 ~ 8078832 (+)
AMCG00015324 esrra,LOC107669367,LOC107715365,LOC104926321,LOC106534575 other upstream 240958 7946208 ~ 7956114 (+)
G97006 NA other upstream 781310 7415369 ~ 7415762 (+)
G97343 NA other downstream 31567 8233424 ~ 8294330 (+)
AMCG00015356 NA other downstream 87113 8288970 ~ 8293681 (+)
AMCG00015358 NA other downstream 93230 8295087 ~ 8303048 (+)
AMCG00015362 NA other downstream 101528 8303385 ~ 8305677 (+)
AMCG00015359 NA other downstream 105723 8307580 ~ 8312199 (+)

Expression


Co-expression Network