AMCG00015356


Basic Information

Item Value
gene id AMCG00015356
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8288970 ~ 8293681 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015356
AGGACGGAGCGGCAGGTACGCAGCGACACCGGGGCCGGGGCCGCTACCGACACACCGCACCCGCTGCCCCACGATCCTGACTGACACAACTGGCTTGTCTGCCCCCTCAAACGAGTAAACTTTATAGAAAgAGCCAACAGTCCCTCCCTGGCTGCAGTGAGAGGTGTGTGGCGgcgaggggtggggggggggagttggCAGCTGTCAGCATATCCCAGCATGCAGTTTGAGGTGGGGCTGCTGTGCCGGCGCTGTGTGTGGTGTGGGGGCGACAGTCTCCGTCGGATGGCTGTCAGGTCCTCAGGCAGTTACTATGACCTGCTGGGGGTGACCCCGGATGCCTCTGTGGAGCAGATTAAGCAGGCCTTCTTCGTCAGGTCCAAGAAGCTGCACCCAGATAGTGACCCCTCAAACCCAGGTCTGCATGCGCAGTTTGTGGCACTCAGCGAAGCCTACAGGGTGCTGAGCCGGGAGACGTCGCGTCGGGAGTATGACACACAGCTGAGAGCGAGACACAGGCACTgggacagacagacgcacaccgCCGCACCGCactacagCTCGGAAAGTTCTGAGCACGTGCGGTACTCGGAACAGTTCCGCTATGCCCCACCCCAGGACCTCAGTCCTGACCAATTGGAGCGCAAGAGGAAGCGGAACTTGCGCCTGGTTGGCTACTGTATGCTGGCGATGATTGGCAGCATCGTCGCGCACTACTTCGGTTTCAGaAAACTTGAAGAGATGCACAATAGCTTCATGGAGGAGAAGGACAGAGCGATCACAGAGATCTACAACACCTCCAAGGAGAGAGCCAgAGTGAACGGCTTCCAGAAACAGACTGCGATCCTGAGACAGAAGCACGCCGAGTTTGTGGAAAAATACCAacggagggaggagagggggacagaCGACAAgtagagaggaaaagagagagagggagggagagagagagcttgtGAACCTCAATAAAAGCTCATCCCGCCCTGGACTGAAACGGCCTGCTGATGTCACTGTTCTTTATTCACACCGCATCGTTACCTCACCCTCTCAGCAGCTCGGGGTCATTACATCATTCCTGCACACTAGAGCAATGGAGTCGGCACAGATAGCAACTGAAGACTAAGTGCAGTCAGGAG
>TU121351
TCTCCGCCCCGCTGCCCTGTGACGGCGGCGCGGCGGGGAAGGGGGAGGACGGAGCGGCAGGTACGCAGCGACACCGGGGCCGGGGCCGCTACCGACACACCGCACCCGCTGCCCCACGATCCTGACTGACACAACTGGCTTGTCTGCCCCCTCAAACGAGTAAACTTTATAGAAAgAGCCAACAGTCCCTCCCTGGCTGCAGTGAGAGGTCCTCAGGCAGTTACTATGACCTGCTGGGGGTGACCCCGGATGCCTCTGTGGAGCAGATTAAGCAGGCCTTCTTCGTCAGGTCCAAGAAGCTGCACCCAGATAGTGACCCCTCAAACCCAGGTCTGCATGCGCAGTTTGTGGCACTCAGCGAAGCCTACAGGGTGCTGAGCCGGGAGACGTCGCGTCGGGAGTATGACACACAGCTGAGAGCGAGACACAGGCACTgggacagacagacgcacaccgCCGCACCGCactacagCTCGGAAAGTTCTGAGCACGTGCGGTACTCGGAACAGTTCCGCTATGCCCCACCCCAGGACCTCAGTCCTGACCAATTGGAGCGCAAGAGGAAGCGGAACTTGCGCCTGGTTGGCTACTGTATGCTGGCGATGATTGGCAGCATCGTCGCGCACTACTTCGGTTTCAGaAAACTTGAAGAGATGCACAATAGCTTCATGGAGGAGAAGGACAGAGCGATCACAGAGATCTACAACACCTCCAAGGAGAGAGCCAgAGTGAACGGCTTCCAGAAACAGACTGCGATCCTGAGACAGAAGCACGCCGAGTTTGTGGAAAAATACCAacggagggaggagagggggacagaCGACAAgtagagaggaaaagagagagagggagggagagagagagcttgtGAACCTCAATAAAAGCTCATCCCGC

Function

GO: NA

KEGG:

id description
K09524 DNAJC4; DnaJ homolog subfamily C member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015356 True 1136 mRNA 0.58 7 8289015 8293681
TU121351 False 894 TUCP 0.59 7 8288970 8293527

Neighbor

gene id symbol gene type direction distance location
AMCG00015346 NA coding upstream 24802 8259173 ~ 8264168 (+)
AMCG00015344 ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding upstream 64197 8215015 ~ 8224773 (+)
AMCG00015325 LOC106603145 coding upstream 318287 7964647 ~ 7970683 (+)
AMCG00015323 ccdc85b,LOC102791751 coding upstream 387250 7901121 ~ 7901720 (+)
AMCG00015316 NA coding upstream 439967 7845592 ~ 7849003 (+)
AMCG00015357 NA coding downstream 78785 8372466 ~ 8381177 (+)
AMCG00015364 NA coding downstream 139802 8433483 ~ 8443894 (+)
AMCG00015369 sart1,LOC107568296 coding downstream 221032 8514713 ~ 8524559 (+)
AMCG00015370 LOC102776143 coding downstream 259117 8552798 ~ 8572065 (+)
AMCG00015378 LOC105028067,LOC106563498,LOC106603157,LOC108412801,LOC108278882 coding downstream 298235 8591916 ~ 8596613 (+)
G97350 NA non-coding upstream 38685 8248111 ~ 8250285 (+)
G97347 NA non-coding upstream 43983 8242777 ~ 8244987 (+)
G97265 cfl1,LOC105028071,LOC106604708,LOC106611761 non-coding upstream 115959 8096386 ~ 8173011 (+)
G97293 NA non-coding upstream 160081 8126775 ~ 8128889 (+)
G97284 NA non-coding upstream 172418 8114916 ~ 8116552 (+)
G97383 NA non-coding downstream 183541 8477222 ~ 8480537 (+)
G97543 NA non-coding downstream 319574 8613255 ~ 8616320 (+)
G97547 NA non-coding downstream 330408 8624089 ~ 8624687 (+)
G97560 NA non-coding downstream 398747 8692428 ~ 8692642 (+)
G97588 NA non-coding downstream 425560 8719241 ~ 8719562 (+)
AMCG00015345 NA other upstream 87113 8197072 ~ 8201857 (+)
AMCG00015335 NA other upstream 139811 8147345 ~ 8149159 (+)
AMCG00015343 gng3,LOC107559409 other upstream 162513 8124306 ~ 8126457 (+)
AMCG00015334 NA other upstream 210138 8074181 ~ 8078832 (+)
AMCG00015324 esrra,LOC107669367,LOC107715365,LOC104926321,LOC106534575 other upstream 332856 7946208 ~ 7956114 (+)
AMCG00015358 NA other downstream 1406 8295087 ~ 8303048 (+)
AMCG00015362 NA other downstream 9704 8303385 ~ 8305677 (+)
AMCG00015359 NA other downstream 13899 8307580 ~ 8312199 (+)
AMCG00015365 naa40,LOC107750594,LOC107691908,LOC107749810 other downstream 48812 8342493 ~ 8433092 (+)
AMCG00015363 NA other downstream 88988 8382669 ~ 8411881 (+)

Expression


Co-expression Network