AMCG00015357


Basic Information

Item Value
gene id AMCG00015357
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8372466 ~ 8381177 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015357
ATGCCTGGGCTTCGTGTCTACGCTGTACTCGGGACAGACTTGCCGCCGCGACAGTTGCAGAGggATATGCAGAGTACCCAGTGGACAGTGTCTCTGCCCTCCTCTCTCCCGGATCAGCTGGTGGTATTCAGTCAGGGGCAGTGGGAGGAGCTGCCCGGGGAAGTTGCTGTGGAGCTGACTGGGCTGGGGGGTGCCACCCTGAGCCTGGGCTCCCTCTCCCCCCATTGCAGTGGCCCCCCCCCGGATCACCGCACCCCCCAGCGCAGAGTCCGACACCGACCCCGCTCCAGCCACGTGCCCCTGTTCACACCTGCCGACACACCACtgaaccccccaccacccaaaCACACAGGTCAGTGTGATACTGAGGGAGAGACGGAACAGCAAGTCTCCGAGGGCACTCCTTCAGGTCGCTGGGGTCACAGCCTGTGCCAGGTGGACCCCCAGACAGCCATCCTGATTGGAGGACAGGGTTCTAGAATGCAGTTCTGCAAGGACCCCATGTGGAAGCTGAGCACAGGCGACCTGTCCTGGGTTGCTGTGGAGACTATAGCGGACGGCCCCACCCCCGACTGCCGGATGGGCCACACTGCGACCTTCGACCCAGAGAAGAAACGCATCTATGTGTTCGGTGGCTCCAAGAACAGGAAGTGGTTCAATGACGTCCATATCCTGGACACGGAGAGCTGGAGGTGGACGATGGTGGAGGCGCAGGGTAAGGTGCCCCCCCTGGCGTACcacagctgcagtgtgttcCGGGGGGAGCTGTTCGTGTTGGGGGGGGTGTTCCCGcgcccccacccccagcctGACGGCTGCAGCCTGATGGAGTTCTCTGCAGTGGAGGTTACTGGAGCGCCCCCTTCTCCTAGGAGTTGGCATGGCAGCGCGGTGCTCCCTGGCAACAGATTCCTGGTCCACGGCGGGTATGATGGCAACAGCGCCCTGAGTGACAGCTTCATCTTCAACACAGGTGATGGGGGTGAGGACATTGTGACACAcattGAGACATCGGAATTGGAAGGTCAGGAGGTTCCCGAGCCACGCCCCCACACCCTGCTGCTCTTTGGAGGCGGGGACAACGAGGGCGGTTTCTACTCCGATACGCTGACGCTGGCAATTGACGAGCTGCTCGACCAATAG

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015357 True 1143 mRNA 0.62 9 8372466 8381177

Neighbor

gene id symbol gene type direction distance location
AMCG00015346 NA coding upstream 108298 8259173 ~ 8264168 (+)
AMCG00015344 ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding upstream 147693 8215015 ~ 8224773 (+)
AMCG00015325 LOC106603145 coding upstream 401783 7964647 ~ 7970683 (+)
AMCG00015323 ccdc85b,LOC102791751 coding upstream 470746 7901121 ~ 7901720 (+)
AMCG00015316 NA coding upstream 523463 7845592 ~ 7849003 (+)
AMCG00015364 NA coding downstream 52306 8433483 ~ 8443894 (+)
AMCG00015369 sart1,LOC107568296 coding downstream 133536 8514713 ~ 8524559 (+)
AMCG00015370 LOC102776143 coding downstream 171621 8552798 ~ 8572065 (+)
AMCG00015378 LOC105028067,LOC106563498,LOC106603157,LOC108412801,LOC108278882 coding downstream 210739 8591916 ~ 8596613 (+)
AMCG00015377 fkbp2,LOC106603154 coding downstream 227673 8608850 ~ 8612864 (+)
G97350 NA non-coding upstream 122181 8248111 ~ 8250285 (+)
G97347 NA non-coding upstream 127479 8242777 ~ 8244987 (+)
G97265 cfl1,LOC105028071,LOC106604708,LOC106611761 non-coding upstream 199455 8096386 ~ 8173011 (+)
G97383 NA non-coding downstream 96045 8477222 ~ 8480537 (+)
G97543 NA non-coding downstream 232078 8613255 ~ 8616320 (+)
G97547 NA non-coding downstream 242912 8624089 ~ 8624687 (+)
G97560 NA non-coding downstream 311251 8692428 ~ 8692642 (+)
G97588 NA non-coding downstream 338064 8719241 ~ 8719562 (+)
AMCG00015359 NA other upstream 60267 8307580 ~ 8312199 (+)
AMCG00015362 NA other upstream 66789 8303385 ~ 8305677 (+)
AMCG00015358 NA other upstream 69418 8295087 ~ 8303048 (+)
G97343 NA other upstream 78136 8233424 ~ 8294330 (+)
AMCG00015356 NA other upstream 78785 8288970 ~ 8293681 (+)
AMCG00015363 NA other downstream 1492 8382669 ~ 8411881 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other downstream 147841 8529018 ~ 8533404 (+)
G97513 NA other downstream 162147 8543324 ~ 8544782 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other downstream 305591 8686768 ~ 8687680 (+)
AMCG00015412 NA other downstream 415894 8797071 ~ 9124271 (+)

Expression


Co-expression Network