AMCG00015358


Basic Information

Item Value
gene id AMCG00015358
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8295087 ~ 8303048 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015358
ATGGGGGATGTCAGAGCCCGCTGCCACACGGCCCGTAGCCGGAGTGTCCTagaaaaggaggaggaggtggaaaTAATAGAGGAGGCGAAAGAATACGGCCAGCAGCCCATCGAGCAGCAGAATAAACCCGCGGATCACTGGCAAGCTGCGACAATGGACGTGCGGTGGAAAGTCCTCCTGGCAGTGCTGCACTTCATCCTGGCGACGAGGATGCCGGCGTCTTTCGCCAAGTGGCTGGACGTGTATAACCGCACGTTCTGCCAACCACGTGAGGTGCTGGTGGAGGTGGCGGCCGAGTTCCCTCAGGAGGTGGAGCACCTGTTCCTGCCTGGCTGTGTGGCGCTGCGGCGCTGCGGGGGCTGCTGCTCCGACGAGGCCCTGGAGTGCGTCCCCCTAAACAGCCGCACACTGCACGTGGAGCTGATGAAGACGAGGTACATGAAGCACGAGCTGGTACAGCTGCCCTTCACAGAGCACAGCCAGTGTGAGTGCAGatTGAAGAAAGACATGCATTTAGTTCCTGTGAGGTTGGAGCAGAAGGAGGGcaggagagagaagcagagacgACTGGGCAGTGGGATGGACCCTGCATCgcAGTGCAGGCCATGCCCAGGCCGGCGGAGGGTGCTGGTCCCAGGGTCCTGCGAGTGCCGCTGCACCCTCTCCACTCAAACCTGCCACCACAAGGGCCGCACTCTGAACCAGCACACCTGCAGATGTGAAGCTCTGGGCCGATGATGAATCCTGGACAGCAGAGACTGtcccttccttcctctctccatccatccatccatcccttCATCCATCCAGAATCTTTATCATCTTCTTCACGTCACCGAAAAAGGAGGAATGACTCCGTCCTGTCAGGGaaagaaaagacacacacattctgtctcacacacacacacacacactcactcacccaGATCAAGAGCCCCTTCAGTGGCAGCCTGGAGTggcagaggtgtgtgtgtgtgtgttggtgcatttgtgtgtgagcGTGAAATCACATGGTGGGGGGGAGGTGGATTATGGGAAACATTCCATACCATatacccccccgccccccaccacaaatacatacaaatgttcTTTTAACAAGCTCCCCTGTCCCCTGGTCCGGTTACACCACAAGGAATTTGGCAACTAAGAGAGAGAGCTCATCAGTGTTGGACAGGGACCCGACATGAGGATCCACTGGTCGACGGGACCTCCCTGTTCAACACAGAGCTGCGTCAGAGTGGGGAGAGCGGGGGGGATCTGGATCTCACATGACcccccagacagacagacagacggaccaacggagagagacagacagacagttttTCCCGGCCCTAGTTGTGGCCCCTGCTGAACGCCCATGTCTGCTCACTGCGAACCGAGGCTGATCACAGAGAGTGACTTTGCTGGCTGTGGAGCCCGTTCCCTGGAGCAGCCCTGGGGGAGACAGGACGGGGAGAGGAAGACCCACTTTTCACTTACCATATTTTTGGGATAccagggaagagagagagagattgtataGAGGCCCCCCTACCCCCATCAtcctctgtttgtgtttcttatttctgtttatttctggCAAAtttggtggtgtgtgtgtgtgtgtgtgtcactgagTGAGCTGTGacttatcttttttatttctctctctcttaaatgAAAAAGCCACCCCgaaaatctaaaaaaaagattttattttattgaaaaaacagtttgtgtgtttttgtgttggtcGGTTTGCCTGTGACAGTGTGTCAGGTAGTTAGCGTGCCTTGCGTCCGCGCCTCTGTCTGCTCCTCGGGAGTCCTGGAGCGTCAGTCGCGCTGATGCCGCCTGAAGGGGGAGGGAGCcggagggggggcagggaggggaATGTGAATGTATGTAGTGTCTATctgcctcccccccccc
>TU121378
gagacgggcgactgactgactgactggccgGCCGGTGGACTGGGATCCTCACACCTGTACTGACCCGACCTGCGCGCCTGTGAGCGGCCGGGACCGCAGTCGTGCTGGGGGGGTGTGCGCGGAGACTTTGGACGGGCAGCCACGTTTGTGTATCCTGAGAAAATGAGCAACCGAGAAGTGCGGACTATAGCCAAGTAACATTCCTGGCGTATTGCTCAAATCCGAGGCAATATTATCATTTTGTTGCCTGTTCATTGACTGACACTGAACCCGGAATGGATTAAAAAGTGTGGCGGAGACGTCTTTTCGGTTTGTTGGAGAAGAAGCAGCGATCCGAATATTTACTGTACAGCATAATATAgcctttaatatttaatataatacattctagtatatattatatactatactatattatgTCCTGTCCTGCCCTGTCCTGTCAATGACATCGGTGTGACGCGATTTCCCGGCTCTCCAAAACCAAACACGTTTCAGCTGCTCGGTTTGACACCAGGGTCAAATCAGCAGAACCGAATTCAAACGGGATTCTACATTCTACGACATCGATCGGAcccggggggcggggggcggcGTTGGCTTTGCTGGACCTGTCACACAATGACgcttttttcttcataaataaaacactgagtTGAGTTGAACGGGCTGGGCCGGGAGAAACGGGGTGAAAACAGCTCGTTTTGCCATCGGATTGTGCCCGCTGGGCGCTGCCCGCGATGGGGGATGTCAGAGCCCGCTGCCACACGGCCCGTAGCCGGAGTGTCCTGTCCTGTCTGCTATCCCTGCACGACAAGGATATTGTCATCCCGAAATAAAACCCTCAGCGGCTCCCCTCTTAAgagaaaaggaggaggaggtggaaaTAATAGAGGAGGCGAAAGAATACGGCCAGCAGCCCATCGAGCAGCAGAATAAACCCGCGGATCACTGGCAAGCTGCGACAATGGACGTGCGGTGGAAAGTCCTCCTGGCAGTGCTGCACTTCATCCTGGCGACGAGGATGCCGGCGTCTTTCGCCAAGGTAAGGCATGGTCCGCCACGCTGCCCCCgcgcctcctcctccccctctcagGTTCTCTTCTTTTAGCAACTTCCTAAACATGCATGCTGTCGTTTTCCGTGCAGGTGAACTGGCCGTTTATGTGCGGTTTATGTGGGCTATATATCAGCTGCACCCGTTCGGTCATTGACTTCGTGCTCggagttttcctttttttgcgGCGCTGCCGGAGCGGATCGTGCTCGCCGGCATGTAGCGGCTCCGGCGTGTCGGCGCAGCCCGGCGTCGCACGGCGGCTACGTGACTGTAACGGGGCCCCCGGCTTGACAATGCGGGGCTTGTTCGCCGGCTCGGGCTGCCCTGCTTTGTCGCGCCGCGTTTTCGGTTTTGTTTCGTCTCGGCAGCGGACGTAGTGCTTCACACTGGGGAGAATGCCCAGGGAACTGTGTAACTTAACGCACAGCTACAGTGGAAATGTGAATGCAgcctgatgatgatgatgatgatgatgatgaggatgtTTCCtgctattattatgattacgcATCCGTTTGAAGCAGTCCCAGGTGGGCGTCTCTGGCACCTGTGCTGGCCCAGGGGTGTGCGCGCGCCGCTTCCGGTGCCAGTCTCGCCAGGGCGCGCCAAGGTGACCGCGGGGGTACTGCGGGGACGCGGCTGGGCTCGGCTGGGCCAGCAGGTCAGAGCCCGGGATGTCTCTAATGGCATTGTGCATATTAGAAAGCTTGAACtgagttaaacaaaacatgaagtGATATCAGCTGCGTTGTTTTTTCCAGTGTCAGCAGCAGGGCTGGTGTCACAACATAtatgatagagagagagagagcagagcaaTGCCAGGTGTAGCAGTGTGGTAAACTGCCCAAAAAGGGCAAAACCTGGATGGGATTGGCAGTGTGCTGGGCAGGGGTGTGGGTATTACTTTTTGACTTTTCTGTAGTTTGTTGTTTCCTTTTGCGACCTAGAGGCTAAGTGGCACCGTGCCACCACACACAAGCCTCTGATGCCACATGGTAAGCCAGAGCACGGGGAACTTTCTTCCACTGGAGTTCAGgtccacccccccgccccccccagccAGAATTGGTAAAGTGGGCCAAatgcaataattaattttaaaaatacgttTTGCAACAAGTCACTCTGCTGTGAGGAACGCTGTGTACCAGTAGGCTTTGCATGAGctcgcccccacccccccccccctacatTGAATAAAAGTGCAAAACCGGTCTAGATGTACCTGCACTGTCGCAGGTGTGTTCTGCAGGACGTGTCCGGAGACAGACAGATTATGTCAGCACTGTCACTGTGCTGAGAGTCAGTGGGCTTTACCCCTGTGCGCGCACACCTGCAGCCCTCAATTgctaccccccaccccacATGAAATGCAGCTACCCCCCCAGAAATATGTCTGTCTggtgattgtgtgagtgtgtgtgccctATATCAGTACAGTAGCCAGTTGCAGGTTgagcaagaaaaataataataatcagatacTCTGAACAGGGTTATTGAAGTGTAAACAGTCTGGACTGGCAGCATACTGTACAGGTCCTGCATGACACACCTCCCTCTCTTATAAACTCACCCCCCCCTCTCGCTCCAAATCCCCCCTACCAGTCGACCCTTGCTGTACCACTTGGCCCAAAACCATGTTCCTTCAAGGTCCTTACGAGCTGCCAGCTGTGTACATGGGGCAGGGACGGGGGGATGTGGGGACAGGCGTGCAGAGACAGGGATTGTGGGGGGGAGGGCGGTTGCCTTTCTTTTGGTTTGATCACATAACTTGAAGGACAGAAGCCAGGAGCTGTTTTCTGTGGTAGATTACTGCCTGTGGCATGTTTACTAGGTGTTAaacagaggtcagaggtcaattGCAATTGCAACCCCTGCTGCCAGGACTGTGTatgagagggaggaggagagagagagaaaaggggcgAGAGGGATACAGAAACagagggaaatatatataaacatataaactgTCATACACGTATACACACTCATATCAAAACATGCACACTCagatacacatatacactctcaaacacatttatctacaaagaaacacacacacacacacacacggacacgcacgcatgcacacgcacgcacacattGGGAGTTCAGgggaacagagggagagagtgaatAAGCAGGGGCCAAAGTCTAAACTCTCTCCTACCAGTGGCATGGAGCCAATGACTGGCCTTAACACTGGGGCCCACGCTGGGGGGCCAggttgtgtgagagtgtgtgtagttGTGTCCAGACCCACCACCCCCCACATCTGTGTGTTCTtgatgtgcgtgtgtgtgtgtgttgtcgaCGTGTGTGGATGGATGCACTGCGTCTGGCTTTTTGATGCtgtgctctctttctctctcccccccctcaGCTGGCACACTGGCAGACTCCAGAGTCACACAGGACCCGAGAAGTGCTGAAGTGGCTGGACGTGTATAACCGCACGTTCTGCCAACCACGTGAGGTGCTGGTGGAGGTGGCGGCCGAGTTCCCTCAGGAGGTGGAGCACCTGTTCCTGCCTGGCTGTGTGGCGCTGCGGCGCTGCGGGGGCTGCTGCTCCGACGAGGCCCTGGAGTGCGTCCCCCTAAACAGCCGCACACTGCACGTGGAGCTGATGAAGACGAGGTACATGAAGCACGAGCTGGTACAGCTGCCCTTCACAGAGCACAGCCAGTGTGAGTGCAGatTGAAGAAAGACATGCATTTAGTTCCTGTGAGGTTGGAGCAGAAGGAGGGcaggagagagaagcagagacgACTGGGCAGTGGGATGGACCCTGCATCgcAGTGCAGGCCATGCCCAGGCCGGCGGAGGGTGCTGGTCCCAGGGTCCTGCGAGTGCCGCTGCACCCTCTCCACTCAAACCTGCCACCACAAGGGCCGCACTCTGAACCAGCACACCTGCAGATGTGAAGCTCTGGGCCGATGATGAATCCTGGACAGCAGAGACTGtcccttccttcctctctccatccatccatccatcccttCATCCATCCAGAATCTTTATCATCTTCTTCACGTCACCGAAAAAGGAGGAATGACTCCGTCCTGTCAGGGaaagaaaagacacacacattctgtctcacacacacacacacacactcactcacccaGATCAAGAGCCCCTTCAGTGGCAGCCTGGAGTggcagaggtgtgtgtgtgtgtgttggtgcatttgtgtgtgagcGTGAAATCACATGGTGGGGGGGAGGTGGATTATGGGAAACATTCCATACCATatacccccccgccccccaccacaaatacatacaaatgttcTTTTAACAAGCTCCCCTGTCCCCTGGTCCGGTTACACCACAAGGAATTTGGCAACTAAGAGAGAGAGCTCATCAGTGTTGGACAGGGACCCGACATGAGGATCCACTGGTCGACGGGACCTCCCTGTTCAACACAGAGCTGCGTCAGAGTGGGGAGAGCGGGGGGGATCTGGATCTCACATGACcccccagacagacagacagacggaccaacggagagagacagacagacagttttTCCCGGCCCTAGTTGTGGCCCCTGCTGAACGCCCATGTCTGCTCACTGCGAACCGAGGCTGATCACAGAGAGTGACTTTGCTGGCTGTGGAGCCCGTTCCCTGGAGCAGCCCTGGGGGAGACAGGACGGGGAGAGGAAGACCCACTTTTCACTTACCATATTTTTGGGATAccagggaagagagagagagattgtataGAGGCCCCCCTACCCCCATCAtcctctgtttgtgtttcttatttctgtttatttctggCAAAtttggtggtgtgtgtgtgtgtgtgtgtcactgagTGAGCTGTGacttatcttttttatttctctctctcttaaatgAAAAAGCCACCCCgaaaatctaaaaaaaagattttattttattgaaaaaacagtttgtgtgtttttgtgttggtcGGTTTGCCTGTGACAGTGTGTCAGGTAGTTAGCGTGCCTTGCGTCCGCGCCTCTGTCTGCTCCTCGGGAGTCCTGGAGCGTCAGTCGCGCTGATGCCG

Function

GO: NA

KEGG:

id description
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015358 False 1917 mRNA 0.56 8 8295824 8303048
TU121378 True 5107 TUCP 0.54 8 8295087 8302969

Neighbor

gene id symbol gene type direction distance location
AMCG00015346 NA coding upstream 30919 8259173 ~ 8264168 (+)
AMCG00015344 ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding upstream 70314 8215015 ~ 8224773 (+)
AMCG00015325 LOC106603145 coding upstream 324404 7964647 ~ 7970683 (+)
AMCG00015323 ccdc85b,LOC102791751 coding upstream 393367 7901121 ~ 7901720 (+)
AMCG00015316 NA coding upstream 446084 7845592 ~ 7849003 (+)
AMCG00015357 NA coding downstream 69418 8372466 ~ 8381177 (+)
AMCG00015364 NA coding downstream 130435 8433483 ~ 8443894 (+)
AMCG00015369 sart1,LOC107568296 coding downstream 211665 8514713 ~ 8524559 (+)
AMCG00015370 LOC102776143 coding downstream 249750 8552798 ~ 8572065 (+)
AMCG00015378 LOC105028067,LOC106563498,LOC106603157,LOC108412801,LOC108278882 coding downstream 288868 8591916 ~ 8596613 (+)
G97350 NA non-coding upstream 44802 8248111 ~ 8250285 (+)
G97347 NA non-coding upstream 50100 8242777 ~ 8244987 (+)
G97265 cfl1,LOC105028071,LOC106604708,LOC106611761 non-coding upstream 122076 8096386 ~ 8173011 (+)
G97383 NA non-coding downstream 174174 8477222 ~ 8480537 (+)
G97543 NA non-coding downstream 310207 8613255 ~ 8616320 (+)
G97547 NA non-coding downstream 321041 8624089 ~ 8624687 (+)
G97560 NA non-coding downstream 389380 8692428 ~ 8692642 (+)
G97588 NA non-coding downstream 416193 8719241 ~ 8719562 (+)
G97343 NA other upstream 757 8233424 ~ 8294330 (+)
AMCG00015356 NA other upstream 1406 8288970 ~ 8293681 (+)
AMCG00015345 NA other upstream 93230 8197072 ~ 8201857 (+)
AMCG00015335 NA other upstream 145928 8147345 ~ 8149159 (+)
AMCG00015343 gng3,LOC107559409 other upstream 168630 8124306 ~ 8126457 (+)
AMCG00015362 NA other downstream 337 8303385 ~ 8305677 (+)
AMCG00015359 NA other downstream 4532 8307580 ~ 8312199 (+)
AMCG00015365 naa40,LOC107750594,LOC107691908,LOC107749810 other downstream 39445 8342493 ~ 8433092 (+)
AMCG00015363 NA other downstream 79621 8382669 ~ 8411881 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other downstream 225970 8529018 ~ 8533404 (+)

Expression


Co-expression Network