AMCG00015359


Basic Information

Item Value
gene id AMCG00015359
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8307580 ~ 8312199 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015359
CGCGGCCTGTAGTGCGCATGTGCAGCGTTCCGCGAGTGCATACAGCGCGCATGTGCTAGattgtattgcattatattttacgATGCACGACTCCTAACATCTACTTTCGTCTTTTTACAGCGTTGTGAAGGCGGGACCATGATATCggCTCTGGTCCTGGGTTGTCCTGCTGCTGTCCCAGATGGCGGTGCCTCTGGCAGGGGTCCTGATGCTGCAGGTCCAGCACTACCtggtctgctgctgctgtagttGTCCAGTGCATGTGCTCTCTGCCCTGGTGGACTTTCATGGTACTGCAGAAGGGTGGCTTTGTGATGGGAGGCTGAGCCTGATGCTGGCTGTCCTGGAGGTTGCTGTCCCCATTAGCAGGTATGATCTTCGACACTTTCCGTCCCTTGCCTGCAGCATCGTTTGGGGTGGAGCAGTCCAGAAGTGCATCAGTGATCGGTCTGGTTTCTGGATGTGGATGACTGAGCATGTCACCTGCCTGAAAGGTGATGTGCTCTTTCCCCACACCTGCACGATCACTGCTCTGGCTCATGAGGGGTGTCTGGGAGCTGCTGGACACCTTGTATTGTGCCCCTCTAGAGTGTGACTGGAGAACTAGAGCCAGAGCTGTAGAGGACTTGTTCAAGACTAATGTTTttgatctttaaataaaatgccaaaCTTTTAAAAGTGCTCAGTTTCCTAATTTCCTGTTGCCTGTGCACAAAGCTCTGCTTGGGTGCAGTGCTGTGGTGGTCAAACCCACCAGTGCATTGCTTTTAGCAGGTTTGTGTTGGACTGGCAGTGCTCTCTGCATGAATGCCTCCATGGATCAGGCTGTGTGCTTGGTGCCCCCCCACTGGCACTGGGATAGGAGGCTAATCCTGGGGGAGGGTTTAGGTGTTGCAAGTGCCTTGCAGTGTTTACCTCCTGTTAAAATAGTTGTACAAAATAGATTTAgcacatgcataataatgaaCAGGCCTGAGTTTGTTGATTGGTGATGGTCAGCATTCTTCTAGCAGCAGATATCAAAGTCCTCTACCAAATACTTGTGGCCAAGAGACTGAATACTtgtgtacatgttttttatttgtaataaatttgcaaagatttcaaacaa
>TU121380
TGAGAGGCGCTCGGTCATTTTGTTCGGGTCCGGCTCTCTGCGTTGTGAAGGCGGGACCATGATATCggCTCTGGTCCTGGGTTGTCCTGCTGCTGTCCCAGATGGCGGTGCCTCTGGCAGGCATTCTCCTGGGGTGACTGTGCCTTGAGGGGTCCTGATGCTGCAGGTGTTGATTCCATGTGAATAGAGCAGGTCCAGCACTACCtggtctgctgctgctgtagttGTCCAGTGCATGTGCTCTCTGCCCTGGTGGACTTTCATGGTACTGCAGAAGGGTGGCTTTGTGATGGGAGGCTGAGCCTGATGCTGGCTGTCCTGGAGGTTGCTGTCCCCATTAGCAGGACTTGTCTGCTCTTGCCTGGACCCTCTAGCTGCATGTCTGAGCTGATGAGGATGTCTGAAATTTAGTGTGAAGTGCATCAGTGATCGGTCTGGTTTCTGGATGTGGATGACTGAGCATGTCACCTGCCTGAAAGGTCTGTCCTCACCGCCAGTTGATGTTTGAGCCCCCGGGGACTGCATCCTCTTCAGTCCACAGCTCAGCTCACAGGTGATGTGCTCTTTCCCCACACCTGCACGATCACTGCTCTGGCTCATGAGGGGTGTCTGGGAGCTGCTGGACACCTTGTATTGTGCCCCTCTAGAGTGTGACTGGAGAACTAGAGCCAGAGCTGTAGAGGACTTGTTCAAGACTAATGTTTttgatctttaaataaaatgccaaaCTTTTAAAAGTGCTCAGTTTCCTAATTTCCTGTTGCCTGTGCACAAAGCTCTGCTTGGGTGCAGTGCTGTGGTGGTCAAACCCACCAGTGCATTGCTTTTAGCAGGTTTGTGTTGGACTGGCAGTGCTCTCTGCATGAATGCCTCCATGGATCAGGCTGTGTGCTTGGTGCCCCCCCACTGGCACTGGGATAGGAGGCTAATCCTGGGGGAGGGTTTAGGTGTTGCAAGTGCCTTGCAGTGTTTACCTCCTGTTAAAATAGTTGTACAAAATAGATTTAgcacatgcataataatgaaCAGGCCTGAGTTTGTTGATTGGTGATGGTCAGCATTCTTCTAGCAGCAGATATCAAAGTCCTCTACCAAATACTTGTGGCCAAGAGACTGAATACTtgtgtacatgttttttatttgtaataaatttgcaaagatttcaaacaacctttcatgttttcattatggg
>TU121381
TGAGAGGCGCTCGGTCATTTTGTTCGGGTCCGGCTCTCTGGTGAGTGTTACTGGATGTGGTGGTTGTGTAGTGCAAGCTTGATGgttatgtgtttattaaacaaaGGGAACTTGAGACTGTTATAATGCACAACTGTAAAACTTCATTTAGTATGAGTTTATGGATTCATAGTAGATTGCATTTTCTCTAAGAATCTCGGTTCCTGTTGAGGGAACGCCTATTGGCTTAATTTTCGCTGTCTTGGGGGAAGTACCCACAATTAAAGATGTTAATGACTATCGCTAGGCTTTAATCCGGCTCCTCAATGATGAGAACTTTTCACAGACCTGTTCTGAACCGCTGTGACTGGAAGTTATTATTTCTGACTGGGGACCCGCAGTGCGCAGCCGCGTGGTGTGCGGTGTGCGCGCGCGATGGCACCGCCGCGTTCCCACGTGCGCGGCCTGTAGTGCGCATGTGCAGCGTTCCGCGAGTGCATACAGCGCGCATGTGCTAGattgtattgcattatattttacgATGCACGACTCCTAACATCTACTTTCGTCTTTTTACAGCGTTGTGAAGGCGGGACCATGATATCggCTCTGGTCCTGGGTTGTCCTGCTGCTGTCCCAGATGGCGGTGCCTCTGGCAGGCATTCTCCTGGGGTGACTGTGCCTTGAGGGGTCCTGATGCTGCAGGTGTTGATTCCATGTGAATAGAGCAGGTCCAGCACTACCtggtctgctgctgctgtagttGTCCAGTGCATGTGCTCTCTGCCCTGGTGGACTTTCATGGTACTGCAGAAGGGTGGCTTTGTGATGGGAGGCTGAGCCTGATGCTGGCTGTCCTGGAGGTTGCTGTCCCCATTAGCAGGACTTGTCTGCTCTTGCCTGGACCCTCTAGCTGCATGTCTGAGCTGATGAGGATGTCTGAAATTTAGTGTGAAGTGCATCAGTGATCGGTCTGGTTTCTGGATGTGGATGACTGAGCATGTCACCTGCCTGAAAGGTCTGTCCTCACCGCCAGTTGATGTTTGAGCCCCCGGGGACTGCATCCTCTTCAGTCCACAGCTCAGCTCACAGGTGATGTGCTCTTTCCCCACACCTGCACGATCACTGCTCTGGCTCATGAGGGGTGTCTGGGAGCTGCTGGACACCTTGTATTGTGCCCCTCTAGAGTGTGACTGGAGAACTAGAGCCAGAGCTGTAGAGGACTTGTTCAAGACTAATGTTTttgatctttaaataaaatgccaaaCTTTTAAAAGTGCTCAGTTTCCTAATTTCCTGTTGCCTGTGCACAAAGCTCTGCTTGGGTGCAGTGCTGTGGTGGTCAAACCCACCAGTGCATTGCTTTTAGCAGGTTTGTGTTGGACTGGCAGTGCTCTCTGCATGAATGCCTCCATGGATCAGGCTGTGTGCTTGGTGCCCCCCCACTGGCACTGGGATAGGAGGCTAATCCTGGGGGAGGGTTTAGGTGTTGCAAGTGCCTTGCAGTGTTTACCTCCTGTTAAAATAGTTGTACAAAATAGATTTAgcacatgcataataatgaaCAGGCCTGAGTTTGTTGATTGGTGATGGTCAGCATTCTTCTAGCAGCAGATATCAAAGTCCTCTACCAAATACTTGTGGCCAAGAGACTGAATACTtgtgtacatgttttttatttgtaataaatttgcaaagatttcaaacaacctttcatgttttcattatggg

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015359 False 1111 mRNA 0.50 8 8308018 8312177
TU121380 False 1192 lncRNA 0.50 11 8307580 8312199
TU121381 True 1710 lncRNA 0.49 10 8307580 8312199

Neighbor

gene id symbol gene type direction distance location
AMCG00015346 NA coding upstream 43412 8259173 ~ 8264168 (+)
AMCG00015344 ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding upstream 82807 8215015 ~ 8224773 (+)
AMCG00015325 LOC106603145 coding upstream 336897 7964647 ~ 7970683 (+)
AMCG00015323 ccdc85b,LOC102791751 coding upstream 405860 7901121 ~ 7901720 (+)
AMCG00015316 NA coding upstream 458577 7845592 ~ 7849003 (+)
AMCG00015357 NA coding downstream 60267 8372466 ~ 8381177 (+)
AMCG00015364 NA coding downstream 121284 8433483 ~ 8443894 (+)
AMCG00015369 sart1,LOC107568296 coding downstream 202514 8514713 ~ 8524559 (+)
AMCG00015370 LOC102776143 coding downstream 240599 8552798 ~ 8572065 (+)
AMCG00015378 LOC105028067,LOC106563498,LOC106603157,LOC108412801,LOC108278882 coding downstream 279717 8591916 ~ 8596613 (+)
G97350 NA non-coding upstream 57295 8248111 ~ 8250285 (+)
G97347 NA non-coding upstream 62593 8242777 ~ 8244987 (+)
G97265 cfl1,LOC105028071,LOC106604708,LOC106611761 non-coding upstream 134569 8096386 ~ 8173011 (+)
G97383 NA non-coding downstream 165023 8477222 ~ 8480537 (+)
G97543 NA non-coding downstream 301056 8613255 ~ 8616320 (+)
G97547 NA non-coding downstream 311890 8624089 ~ 8624687 (+)
G97560 NA non-coding downstream 380229 8692428 ~ 8692642 (+)
G97588 NA non-coding downstream 407042 8719241 ~ 8719562 (+)
AMCG00015362 NA other upstream 1903 8303385 ~ 8305677 (+)
AMCG00015358 NA other upstream 4532 8295087 ~ 8303048 (+)
G97343 NA other upstream 13250 8233424 ~ 8294330 (+)
AMCG00015356 NA other upstream 13899 8288970 ~ 8293681 (+)
AMCG00015345 NA other upstream 105723 8197072 ~ 8201857 (+)
AMCG00015365 naa40,LOC107750594,LOC107691908,LOC107749810 other downstream 30294 8342493 ~ 8433092 (+)
AMCG00015363 NA other downstream 70470 8382669 ~ 8411881 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other downstream 216819 8529018 ~ 8533404 (+)
G97513 NA other downstream 231125 8543324 ~ 8544782 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other downstream 374569 8686768 ~ 8687680 (+)

Expression


Co-expression Network