AMCG00015361


Basic Information

Item Value
gene id AMCG00015361
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8361614 ~ 8370031 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015361
GCCGTTCCCTCCCCAATGCCTCCCCTCCCTCTGGACGAACGCATCGTTGTCCTGCAGAGGCCCAAGTCCCTGTCCCTGCGCCTgggctccccccacccccccacaccaccccCAGAGCTCCCTCGGCACCCAGTgcagagaggggtggggggcggaggaggaggaggaggaggcggaggaggggggaggagtGGGGTTAGCGCCGGGCCAGCATTGGGGCTCGGGGTGGTAGCTAACTGCAACGGGACCACAGCCGGGACGCAGCAGGACGGCGGGGGCGACAGCGGTGGCAGGGGGGGCAACAAACGTACGCACACCATCGACATCAAACTCTCACTGGGGGGAAGCGTGAGGGGCTCCCTGGGGGGCCCGGGTGGGGGAGGAGGCGGGGGAGGAGCGGGCAGTGTTCCGGCGAAGAGCCCGGCACCGAGGGCGAGTGGGAGGAGCAGACACAGGGACAGGAGGGTCTCCGTGCGGCTGGATTTGGGGCAGGcggagaagaggagagagggcaCGGGGGCTGGGGGGAAGCAGCTGCAGGACGTCAACCAGCACCAGCTGCCAGAGCGtcgccccccctccctccccggCCCTCCCCCTCACCCTGTCTTCGCAGACCACCGCTTCTTCTTCAGACATCAGAGTCAGCTGCCCGCCTCTTTCCTCCCGTTTGGCCAGCTGCCCCCCTCCCGCAGCCGGGAGAGGCAGTACGGGAAAGCCctagggggagggggagggggcagcagCCGGAGCAGCTCCTCCCGTGGGTACTCTAGTCCCGAGCACTCCTGCACCCTGGACCTGAGGCACCCGTTGAGCTGTGCGTGCCACCGCAGTTGCTGGAGAATGGTGCGTTGCGGTGCGGGGGGcagtggtgggggtggggggtgtacaGGCAGCCCTGCGTCTTCTCTGTCCTgccatggaggaggaggaggaggaggaggaaggggcaGGGGCATGATGGGATTGAAGACGCTGGGCGGCTGTCTGACTGCCTCCTCCGCCAACACCAactcctcctccgcctccacCTCCTCACAGTGCCGGGTGGGCGGAGGGGGGGGGCTGGGGCTGCTGCGACCCCTGGGGTGTGTGCCCTGCGTGGATGGGGGTGGTGGCGGTGGTGGTGGCTGCGGTGGTGGCGGGGGCAGCTGTAGCAGCGTCCTGGGCAGCCCTTCCTCGTCTTCCTCTCTAAGGAGGCGGTTAGTGGGTGGCTGCCTGCCTTGCGCCCCCCCCATCCTTGGCGGGGGGGGTGGTGGCAGCAGTGACGGCGGTGGGGGCTCCTCCACCCTCAGGGCCCTGCAGagctgtgtgggtgtgtgcccCCCATCCACCAAGTCCCTCAGCTCTACCTACAGCCTATGCAGCAGCGACCCCATCGTGACCTTCGACCCCCGCTCCAAAGGGCTGGGGGCGTTGGGGCTGGGACGGGGGGGTGCAGTAGCGGCTCTCTCAGCACCCGACGACGACGACTACAGCGTCCGCACGATCTGGCCGGAGGAGCTGTCCCGGAAGATCACGCGCTCCACCACCACGCCCCAGCAGCCCCTGCGCcgagacagggacagggaccGGGACATCCACAACCACCTGAACCACGGCCCGCCTGCCCCGGTGGGCCCACTCATTCTGGACTCCCGGAAGCTGATGGACCCGACCAGGAACCATGCGCCTAGGGTGGGGTGCGGCGGTAGCAGCAGGGGGACCGGGACCGGGGGCACACACCTGACAGATGCGGCGGGGCGGCGCCGGCTCCAGCAGGGCAAACGTGCCGTCCTGGACTTCATCTCGGCCTCCTCCACGTCCCCGGCGTCCCCCCCTGCCGACACACTGCCCCGGCTGCGGCCTGGCAACGGATATCCTGGGACGGGCGTCAACATCAAGAGGCCGGGCAGCTGGGACCGGCACCACGCCAGCGCCACAGTGGTGGACAACCCCCCGTCCCCCttgccctccccctccccacaccTGCCCCGTCGCTCGCCCTCCCCAGTGACCCCGTCCCCACCCTGCTCGCCTTCGCCCAAGCCCAAACCCCGGGAGCGAGGGAGGACGCCCCCTGCCCAGCCCCTCTCCGCACAGTCTCTCCACCTGGTGCTCAACTCCCTCAATAAACAGCAAGACGAGACCAACGGGAGAGCTCAGGCCTACACCAACAACCACCTCAACGGCAGCGGCAACGGCAGCAGCAAGAACCCCCCCTCCggtctcctcctccccctctcctcttcctccccggCCCAAGCCCCgcccctgtccctctccctggCCCTCAGCGACGGCTTCCACCACGACGACACCGACGGCGACGACGGGCAGCTGGTGATGACGCCAGACATCGAGAACGCGCCGCTCAGCGCCATCCTGCCCTTCCTGTACCTGGGCAACGAGCGGGACGCCCAGGACCTGGGGCTGCTGCTGGGGCTGGGCGTGGGCTACGTGCACACGCTGATGACGATGACTGACGCCTACAAGTACGTGAAGGGCCGGCGGCCGGTCATCTCGCCCAACCTCAACTTCATGGGGCAGCTGCTGGAGTTCGAGAGCGACCTGAACTCGGGGGTCAGTCCCCGCATCCTCACTCCCAAGCTGACCGGGGTGGAGACCGAGgtgtga
>TU121509
cctctcttctgtgTCTACATACTCGTAGCCGCGCTGGGGGGAGGACGTTCAGTCGCGGTATAGGGTGGGATGGGAGTTATTCTGCGCCGCTAACGCCGTCGCTGATGCCGGCCTCTGCGCTCCGCCTGGACCCTGGGGTTGTCGGACAGTGTCTTTCCACGCATGGCTGAGGGGCCCGTACACGCGTGCGGGGGGTCTCATGTGCAGGACGGACGTGTGTGCATGCAGCCGCCTCGCTCGGGACGTGTGCCTCTCTAACGCCGGGACCACCACAGCACGCCAAGATGAAGATCTGTCGTGAGAGCCGTTCTTAACaAGCCGTTCCCTCCCCAATGCCTCCCCTCCCTCTGGACGAACGCATCGTTGTCCTGCAGAGGCCCAAGTCCCTGTCCCTGCGCCTgggctccccccacccccccacaccaccccCAGAGCTCC

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015361 True 2619 mRNA 0.69 4 8361614 8366837
TU121509 False 438 lncRNA 0.65 2 8366717 8370031

Neighbor

gene id symbol gene type direction distance location
AMCG00015360 NA coding downstream 8628 8351682 ~ 8352986 (-)
AMCG00015350 NA coding downstream 85747 8265796 ~ 8275867 (-)
AMCG00015347 NA coding downstream 101842 8249954 ~ 8259772 (-)
AMCG00015351 NA coding downstream 124830 8231238 ~ 8236784 (-)
AMCG00015355 NA coding downstream 133256 8227090 ~ 8228358 (-)
AMCG00015366 NA coding upstream 43379 8413410 ~ 8417776 (-)
AMCG00015367 calm1,LOC102293206,LOC102778633,LOC107396020 coding upstream 109085 8479116 ~ 8481362 (-)
AMCG00015373 NA coding upstream 116520 8486551 ~ 8494860 (-)
AMCG00015371 NA coding upstream 156001 8526032 ~ 8528682 (-)
AMCG00015375 NA coding upstream 164348 8534379 ~ 8535400 (-)
G97409 gng3,LOC107559409 non-coding downstream 235150 8124268 ~ 8126464 (-)
G97395 NA non-coding downstream 292577 8068780 ~ 8069037 (-)
G97244 NA non-coding downstream 345541 8001486 ~ 8016073 (-)
G97221 NA non-coding downstream 390857 7969597 ~ 7970757 (-)
G97134 NA non-coding downstream 541425 7819804 ~ 7820189 (-)
G97475 NA non-coding upstream 61892 8431923 ~ 8433316 (-)
G97536 NA non-coding upstream 226704 8596735 ~ 8598299 (-)
G97561 NA non-coding upstream 240916 8610947 ~ 8611396 (-)
G97562 NA non-coding upstream 242464 8612495 ~ 8634660 (-)
G97574 NA non-coding upstream 285142 8655173 ~ 8656821 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other downstream 77985 8223199 ~ 8283629 (-)
G97411 NA other downstream 227499 8131307 ~ 8134115 (-)
AMCG00015333 nxf1,LOC105897453,LOC108417053,LOC106603139 other downstream 269788 8070035 ~ 8091826 (-)
G97125 NA other downstream 575172 7786087 ~ 7786442 (-)
AMCG00015305 NA other downstream 913320 7390889 ~ 7448294 (-)
G97455 mark2a,LOC107715377 other upstream 39956 8409987 ~ 8411882 (-)
AMCG00015374 NA other upstream 171157 8541188 ~ 8545795 (-)
AMCG00015372 lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587 other upstream 209469 8579500 ~ 8582686 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other upstream 419629 8789660 ~ 8794774 (-)
AMCG00015394 NA other upstream 459271 8829302 ~ 8838979 (-)

Expression


Co-expression Network