AMCG00015362


Basic Information

Item Value
gene id AMCG00015362
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8303385 ~ 8305677 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015362
ATGCAAAGCAACCCGGGACCTTGGAGcttgaaagagagaaaggaaggaggaaagaaagaaagaatgagaaaaagcagaaagaacACAGAAGACCTGCCCTGTAGAGAGGCAGGCCCGAGGTGGTTGCTAGAGATCCCAGCTAGGCCGCACGAGCCCTGGAGAGCCTGCGGGCGGGAGGGTCAGGGCAGGTGA
>TU121379
ggcggggtccTTTTGCGTTACTCCTTCCTGCCGCTCTGCTGTTTCAGAaactgaagaaagaaagaatgaaagagagagacaaccccctcccctcttttgttgttgttgttgttgttaatccATCTCCTTGTCGAGGATTGAGTGACCCGGCACACAATGGCCGTCTAGGAGAGACGCCCGCGGAATGCAAAGCAACCCGGGACCTTGGAGcttgaaagagagaaaggaaggaggaaagaaagaaagaatgagaaaaagcagaaagaacACAGAAGACCTGCCCTGTAGAGAGTGAGAGTTAGCACTGAAGCAGCTGTGTCTTTAACATAGACGAACAACAACCACAGTCGGAGCAttataaattgtgtgtgtgtgtttgctcaCTCGCTCTGTGGCtagttgctgtgtgtgtgtgtgtgtctgtgtttgctcGCTCAGTCAGTCACAGTcctccatgtgtgtgtgtttactcgTTCGCTCGCTCTGTGGCTGGTCTccgagtgtgagtgtgtgcgtttGCTCACACACTCTGTGGCTGGTCTccgagtgtgagtgtgtgcgtttGCTCACACACTCTATGGCTGGTCTCTATGTGTGCGTTTGCTCATGTCTTAATAAGGATGCCCAGCTCCTCTATCGTCCAGTCAGGGCAGGCCCGAGGTGGTTGCTAGAGATCCCAGCTAGGCCGCACGAGCCCTGGAGAGCCTGCGGGCGGGAGGGTCAGGGCAGGTGAAGTGACCTTAAATTGTACAGAGCGCTGTCTTGACTTGACTGATGCCGTTCATGTTGTACTACACACCCTATATTATATACAAGTATAAAAACAAGATGCGAGTTCTGTGACTTTACTGGTCTGAATCGGAGGACCTCTCTGGCACTGCGGGTGTTATTGATCCCAGGTCTGGTCTGGCCTGCTTTTAGAACGGTTGCCCGTCAGCGTTTGGGGCAGATTGTGGTGCCACATGCAATTTCACAATCCCTTGTGCCACCCCTCCCGGGCGCAGGCGAGAGCCGAGTCTGCTCCTGCTCAGGGCGTCATGTCCCGAGGGGGCCTCTAAAGATGGAGGATAAGGAATACCCAACTGCGGCTGAACAGTAAAGGAGATGGGGGTGCTGACATTTcggaacaaatatataaacatttttgaacAGAGGAGGGGGGTGGCGTCAGTCTGAAAGGAGGTTCGGGAGAGTTGTTGTGTGGTGTGCGTGCCGGAGCCCGGCGCGGCCCTCCTGTCTGTACCTGCGGCTCCTTATCAGCAGACATCAGGCCGTCGGGCAGAATATTCCCACATCCTCCGGCCTTATCTCCCAGCTGCCTGCGGGGGAACACAGGGAGAGGAGagtcataataaataacagagagagagagccagcactcttttaaattcttatttatattttttttttgccccgCTGCGTTCACTTCATCCAAgattcaaaagaaaagaaaaagaattaAGTACAGAAATCTGGCGTGCGGTAGCTTTGCTAGATGGAATGGGGTGTCCTCTCgggtaatgtttttttttttttttttcgtttgttttgtttgctggcGGCACAGAtagccaacaaaaaaaaaagaaagttgtgGAGCCAGAGGAGGCCAGGGATGGGAGACTCCCAAGGCTACTGTGACAGCGTGTTCTGTTAGCACGTGTCGACGGGACTCTGTCAGAGGTGGCCGTGTCCCATGTGCTGCACAGAAAAATGGCTCTGCCGTTCAAAACCACGAGAAACTGGCCAGTTGATAAAAAGTCTGCCAGGCTTTTACTTTCTGTCCTTTGAGTGGACCAGTCTGGTAGTCCACTATTGACTGAAATGCGCAAGCAAATCAAAccttccaaaatatatatatatatatatatatataatctgagtgaatgaagaaaatcaatacattctCTGGATATTCTCCCTCCTCGTCTCTCCTCCTACCTGTGGACGCCCCTTCCCCTGCAGCCACCCCAGCCATTCATCACAGCGTGTTGGGGGAGGGTGGAAAAAGGAACGCTAAATAAGTATAACTAGATTAAACTATGAGGTAAATCTCTGCTGCCCCACCCCCCTACCCCTGTGCTGTGTATCTGAAAAAACTATGTGTACAAATCTGCTGTGAGTGTCCGTGTGTGCCATCACTGTTGCACTGTGTGTAGTAAAGCCATTAATATACAAACATGTTATCCAGGAATATTGTGCAGCATAGTGACCGTGACGATGCCGTTATTATATCGACCCCAGCAGTTAGAACAGTAGCAGTGTGGGAggtgaacagaagaaaacattaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015362 False 192 mRNA 0.56 2 8303569 8304117
TU121379 True 2293 lncRNA 0.49 1 8303385 8305677

Neighbor

gene id symbol gene type direction distance location
AMCG00015346 NA coding upstream 39217 8259173 ~ 8264168 (+)
AMCG00015344 ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding upstream 78612 8215015 ~ 8224773 (+)
AMCG00015325 LOC106603145 coding upstream 332702 7964647 ~ 7970683 (+)
AMCG00015323 ccdc85b,LOC102791751 coding upstream 401665 7901121 ~ 7901720 (+)
AMCG00015316 NA coding upstream 454382 7845592 ~ 7849003 (+)
AMCG00015357 NA coding downstream 66789 8372466 ~ 8381177 (+)
AMCG00015364 NA coding downstream 127806 8433483 ~ 8443894 (+)
AMCG00015369 sart1,LOC107568296 coding downstream 209036 8514713 ~ 8524559 (+)
AMCG00015370 LOC102776143 coding downstream 247121 8552798 ~ 8572065 (+)
AMCG00015378 LOC105028067,LOC106563498,LOC106603157,LOC108412801,LOC108278882 coding downstream 286239 8591916 ~ 8596613 (+)
G97350 NA non-coding upstream 53100 8248111 ~ 8250285 (+)
G97347 NA non-coding upstream 58398 8242777 ~ 8244987 (+)
G97265 cfl1,LOC105028071,LOC106604708,LOC106611761 non-coding upstream 130374 8096386 ~ 8173011 (+)
G97383 NA non-coding downstream 171545 8477222 ~ 8480537 (+)
G97543 NA non-coding downstream 307578 8613255 ~ 8616320 (+)
G97547 NA non-coding downstream 318412 8624089 ~ 8624687 (+)
G97560 NA non-coding downstream 386751 8692428 ~ 8692642 (+)
G97588 NA non-coding downstream 413564 8719241 ~ 8719562 (+)
AMCG00015358 NA other upstream 337 8295087 ~ 8303048 (+)
G97343 NA other upstream 9055 8233424 ~ 8294330 (+)
AMCG00015356 NA other upstream 9704 8288970 ~ 8293681 (+)
AMCG00015345 NA other upstream 101528 8197072 ~ 8201857 (+)
AMCG00015335 NA other upstream 154226 8147345 ~ 8149159 (+)
AMCG00015359 NA other downstream 1903 8307580 ~ 8312199 (+)
AMCG00015365 naa40,LOC107750594,LOC107691908,LOC107749810 other downstream 36816 8342493 ~ 8433092 (+)
AMCG00015363 NA other downstream 76992 8382669 ~ 8411881 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other downstream 223341 8529018 ~ 8533404 (+)
G97513 NA other downstream 237647 8543324 ~ 8544782 (+)

Expression


Co-expression Network