AMCG00015363


Basic Information

Item Value
gene id AMCG00015363
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8382669 ~ 8411881 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015363
tcctactcctcctcctcctcctctctccctctccctctccctctccccgaCACGGCTGTACGGCGGCCATGTTCAGTGCTCTTGTTCCGGTATCGACGATCCTATTGAAGTTCTGCTGTGAGATATCCGCCTCGGAGCCGCCGGAGCCGCCAGAGCAAGACGCGGTGATATGTACGTGAACGCCTGGGCTCCCATTGCGACTACCCTCCCCTGCATCTGGCGACGACCTGCCTACGATAATTACCCGGCGCTCTCGGATTCCGTGGACTTTCCGTCTTGTTTTTGGTggatttatttcttattttgtgttggttttaaaAGCTAGGTGTTGTATACGGTGGGCAGCAGCGACGGGCGAAGTGGACCTCGCACGACTGAGAccgtttttgtttatttgctagGTTGTTGTCGGGTGTTAttccccccccctctttcttttttaatagaataagtttagttttgtttttgggggCGGCGGGCGGCGGAGGGAAGGTATATTTAACTTCCCAGCGAGAAGGTCGAGTTCCGCCTGGCCTGGCCTAAAACTCCGAATCCCCGGGCTCGATTTCAAAGCTCGCACCGGGGAACGAGCTCCGCCTCGCCAACCCCCGCTCCAACTGGCACCCCTTTCCTTGTGAATTCGGACAACCTTCCAGGTCTTTCTCTCGGCCCTTTCCACTTCCCTTCCCCACTTGGAGAGGGAGaaagtgagagtgtgagagagagagagagagagagagagaggggtgactGGCTTAGACGTGAGCcaaagttttgtgttttgtatggcGTTTATGTTTTCTACACATGTATTGAAGTGAAGGTTGGAGGAGACATCGCTGGGACTCGCACGCCCCCTCCTCTGCACTCTAATCGCAGGACAGCGGATCTTCAATGAGGAGACAACTTGTTGATATCGTGTGTTTGGATTTGGTCGAAAGCAAATAATCAAGCCGACCTCGTAGTctcacccccctctccctcctcctcctcctcatcctcctttcTCTCCAAGTGGCAGGCTACGATAGCTCAGTACTATGACTTTCTAAAGGGTCCAACAGTTCTGAACACAAACGTTTCCCTGCTGACATGTCTACGCGGCCGCCATTGTCAACGGTGATCGAGCACTCTTCAGCTCAGcactcCACTGGTCACTCGGACAGCTCCAAGCCAGTGGGGCGTCCCAGCATGCCACGCTGCCGGAACTCCCTGGCAACGGCCGCGGACGAGCAGCCACACATCGGCAACTACCGGCTCCTCAAGACCATCGGCAAGGGCAACTTTGCCAAGGTCAAGCTGGCACGGCACGTCCTCACTGGGAAAGagGTGGCCGTGAAGATCATAGACAAGACACAGCTCAACTCCTCTAGTCTACAGAAGCTCTTTCGTGAAGTAAGAATAATGAAGCTTCTGAACCATCCTAATATAGttaAGTTATTTGAAGTGATAGAGACGGAGAAGACTCTGTATTTAGTAATGGAATATGCTAGTGGAGgtgagGTGTTTGATTATCTCGTTGCTCACGGGCGGATGAAAGAGAAGGAGGCTCGGGCCAAATTCCGACAGATTGTGTCAGCAGTGCAGTACTGTCACCAGAATAACGAGTTCACAATGGGCAACAAGCTAGACACGTTCTGTGGCAGCCCCCCCTACGCCGCCCCCGAGCTCTTCCAGGGCAAGAAGTACGACGGCCCCGAGGTGGACGTATGGAGCCTGGGGGTCATCCTTTACACGCTGGAGCTGAGGGAGAGGGTCCTGCGGGGGAAGTACAGAATCCCCTTCTACATGTCCACGGACTGCGAGAACCTGCTGAAAAAATTCCTCATCCTCAACCCAGCCAAGAGGGGCAGCCTGGAGATGGGATACACCCCTGAGGAGATCCAGGACTCCCTGGTCAATCAGAAATACAATGAGGTGATGGCAACGTACCTGCTGCTGGACTATAAAACCTCAGAGcTTGAAGATGGGATGGTTTTGATAAAACCACGCCCAGGAAGTGACCTCACAAACAGCAACGTCCAATCCCCTCCTCACAAGGTACAGCGCAGCGTCTCGTCCAATCCGAAGCCTCGGAGACCGACTGACCAAGgCACCTCTAATACCTCCTCCAAGCGGGGGGGCTCAGACGGCAAGCACCACTCCGAAGAGGGGGGGCGCAAGGGCTCGGGCAGCTCAGCCAAGGTGCCCGCCAGCCCCCTCACCCCCGCCGACCGCAAGAAgggcacccccaccccctccacaCCTGAACACTCCGGGGTCTCGGGCCTCCACCGCATCCGCCGCCGCCGtgctgtcctcctcctcctcctctacctCCTCCCGCGTTCGCCACCAGAAATCCCTGTCCACCTCCAACCACCCCAGCCCCCCCCAGCACCCCCACAGCGCCCGGCCCAGGCAACGCACAACATTAGCAGCTCTGTGGCGACGGACCGTACCAACTTCCCACGGGGGGTGCTCAGTCGCAGCACTTTCCACGCCGGCCAGCAGAGGGCAACGAGAGACCAGCACAGCCCGTACAATGGGCCCCccgcctccccctccctctcccacgGCAACAGCCAGGCGCGGCGTGGGGGGGCCAGTGGCATCTTCAGCAAGTTCACCTCCAAGTTTGTGCGCAGgAACCCATACGAGAGCGACAGCAGAGAGCTGGCTGAGGGGAGCAGaCCCATGCTGAGCGTTAGCGGCAGTGGCAACAACAGTGACAACCCCACCAACACCAACAACCCGCCGAAGGAGGGCAAGGAGGAGAACTGCGTCCCCACAGTGCCCGGGCACCCCGCGCCCACGCCGCCCGGGACGGGCCTGGCGCTGAAGGACCCCAAGCCGCGCTCACTGCGCTTCACCTGGAGCATGAAGACCACCAGCTCTATGGAGCCCGGCGAGATGATGCGCGAGATCCGCAAGGTGCTGGACGCCAATGGCTGCGAGTACGAAGCCCGCGAGCGCTTCCTGCTGCTagattatttttaa
>TU121400
ctctccctctccctctccccgaCACGGCTGTACGGCGGCCATGTTCAGTGCTCTTGTTCCGGTATCGACGATCCTATTGAAGTTCTGCTGTGAGATATCCGCCTCGGAGCCGCCGGAGCCGCCAGAGCAAGACGCGGTGATATGTACGTGAACGCCTGGGCTCCCATTGCGACTACCCTCCCCTGCATCTGGCGACGACCTGCCTACGATAATTACCCGGCGCTCTCGGATTCCGTGGACTTTCCGTCTTGTTTTTGGTggatttatttcttattttgtgttggttttaaaAGCTAGGTGTTGTATACGGTGGGCAGCAGCGACGGGCGAAGTGGACCTCGCACGACTGAGAccgtttttgtttatttgctagGTTGTTGTCGGGTGTTAttccccccccctctttcttttttaatagaataagtttagttttgtttttgggggCGGCGGGCGGCGGAGGGAAGGTATATTTAACTTCCCAGCGAGAAGGTCGAGTTCCGCCTGGCCTGGCCTAAAACTCCGAATCCCCGGGCTCGATTTCAAAGCTCGCACCGGGGAACGAGCTCCGCCTCGCCAACCCCCGCTCCAACTGGCACCCCTTTCCTTGTGAATTCGGACAACCTTCCAGGTCTTTCTCTCGGCCCTTTCCACTTCCCTTCCCCACTTGGAGAGGGAGaaagtgagagtgtgagagagagagagagagagagagagaggggtgactGGCTTAGACGTGAGCcaaagttttgtgttttgtatggcGTTTATGTTTTCTACACATGTATTGAAGTGAAGGTTGGAGGAGACATCGCTGGGACTCGCACGCCCCCTCCTCTGCACTCTAATCGCAGGACAGCGGATCTTCAATGAGGAGACAACTTGTTGATATCGTGTGTTTGGATTTGGTCGAAAGCAAATAATCAAGCCGACCTCGTAGTctcacccccctctccctcctcctcctcctcatcctcctttcTCTCCAAGTGGCAGGCTACGATAGCTCAGTACTATGACTTTCTAAAGGGTCCAACAGTTCTGAACACAAACGTTTCCCTGCTGACATGTCTACGCGGCCGCCATTGTCAACGGTGATCGAGCACTCTTCAGCTCAGcactcCACTGGTCACTCGGACAGCTCCAAGCCAGTGGGGCGTCCCAGCATGCCACGCTGCCGGAACTCCCTGGCAACGGCCGCGGACGAGCAGCCACACATCGGCAACTACCGGCTCCTCAAGACCATCGGCAAGGGCAACTTTGCCAAGGTCAAGCTGGCACGGCACGTCCTCACTGGGAAAGagGTGGCCGTGAAGATCATAGACAAGACACAGCTCAACTCCTCTAGTCTACAGAAGCTCTTTCGTGAAGTAAGAATAATGAAGCTTCTGAACCATCCTAATATAGttaAGTTATTTGAAGTGATAGAGACGGAGAAGACTCTGTATTTAGTAATGGAATATGCTAGTGGAGgtgagGTGTTTGATTATCTCGTTGCTCACGGGCGGATGAAAGAGAAGGAGGCTCGGGCCAAATTCCGACAGATTGTGTCAGCAGTGCAGTACTGTCACCAGAAGTGCATTGTACACAGAGATCTCAAGGCTGAGAACCTGCTGCTGGACGCGGACATGAACATCAAGATCGCCGACTTCGGCTTCAGTAACGAGTTCACAATGGGCAACAAGCTAGACACGTTCTGTGGCAGCCCCCCCTACGCCGCCCCCGAGCTCTTCCAGGGCAAGAAGTACGACGGCCCCGAGGTGGACGTATGGAGCCTGGGGGTCATCCTTTACACGCTGGTCAGCGGCTCGCTGCCCTTCGACGGACAGAACCTCAAGG
>TU121401
gtgtgttttcagtatttcaCTCTTGGCCAGCCTTTTACACTGGAATCCAATAGTCCCTCCAGTCTTGTCCCCTATAGTCCAGTCCTTACAGTgccggctccagtctgggccgcTATAGTACAGTAAGTGCTGTAGAGATTTAATGGACTTCTTCCCCTGAAACAGAAAAGGGGATTGTGCAGCAGGAAATgcttgatttgattgattttgataatttagtttttaattgggCCCTGGGAGGGATTTAAGTGTGGTTGGTTGTGTCTGGAAACGCACTGATCCCGCAGTGGGGAAAGAGGGGGggcatgcagacacacacagagctctAGCCACCATCATGGTTGGGTGACAAGTgaaacacaaacgcacacaattAATACAGTAAGGGGGGGTGCTCAATGTAATATGGCAGGGCCCTGTGTGTTTTTTGCTCTCTGTGCAGTTATAGGATGGGGGAGTGCGCagtctccctttctctgtctttgtttttgtgagggATCCAACAGGGGGTCGGAGGAGGTAGTGTGGGTGCAATCTCGCCAATctgcccccccctctctctctgtgtggtccgactggggggtggggggtggtattgctttgtgtgtatgtgtatatatgcgtgtgtgggATTATGTGTATTAgctggtgtgtgtgtaaatatgtatatctaagctgtatgtgtgtatacatgaattgtgtatattgtgttgTGAGTGCGAAGCGTGAGCGTGGCATGTTGTGGTTGTGTTTTGCGCATGCATGACGTGTGCATGGCGTGTATTTGTGGTGTGCCTGGCGCGTGCGTTGCGTGTGAATATATCcacattttttcccttttttttttttttttttttttttttttttttttttttagagattatttttaattttattattgttgtagttATTAAATTAAGGAAGATTATTTACAAACTTGGTGGCCAGCCAACAGCATCATAAACCAGAgagcgagtgagtgagtgtgtgactgCGCCAgtacacaaacgcacacacgcacactcgcGTTCTCCCTCTcgcacacactaacacagacaGGTGTGTGTCTGGCTGTGGGGAGTAGTATATACACAGCAGTGACTGTGTACATCAGTACTGTATAATTTCTCCACAACTGTTGgttaaaaaaagacacacacacaaatactcaCTCAATCTAAGTTGTCTCACTTGTCTCCATTAACGGTTTTAGGAAAATTGTGCGAGTGTAtgactgtatttgtgtttagaCCTCCATCATCAGGGACAGTACAAGGTaatagagagagggggagagagagagagagtgctatagactgggggggggggttcaacAGGGACTGTGCGAGTGCGTGCGAGAGTGAGagactgtgtgtatatatatatgaactctTATAAATAATATCTTGGTCTGTAACTTAAATGAGATTTAAAATTTGCAAGAATCAGTAGGCTTAAAGAGGAGGGGTCAGAGGGTGAGTAGTGGTTCAGAATGGTCAAGCACCTGTACCATATTTTTACTggttaaagatttgttttaattatttttttgttcttttcattttgtttttcctgatcAAGCTTTTCTGGTGCTGGGAATTCGATAGAAGCTGTATCCTGatcattttctcatttgttctttttattttgtgtctctgGGTTGTTTCTGTTGAGATGCTGTAATTATACTGGTTTCTGTGTTCTATATAGATTGATTGGAAttgctg

Function

GO:

id name namespace
GO:0043167 ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015363 True 2979 mRNA 0.58 17 8382669 8411044
TU121400 False 1836 TUCP 0.54 8 8382697 8395409
TU121401 False 1727 lncRNA 0.43 2 8404152 8411881

Neighbor

gene id symbol gene type direction distance location
AMCG00015357 NA coding upstream 1492 8372466 ~ 8381177 (+)
AMCG00015346 NA coding upstream 118501 8259173 ~ 8264168 (+)
AMCG00015344 ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding upstream 157896 8215015 ~ 8224773 (+)
AMCG00015325 LOC106603145 coding upstream 411986 7964647 ~ 7970683 (+)
AMCG00015323 ccdc85b,LOC102791751 coding upstream 480949 7901121 ~ 7901720 (+)
AMCG00015364 NA coding downstream 21602 8433483 ~ 8443894 (+)
AMCG00015369 sart1,LOC107568296 coding downstream 102832 8514713 ~ 8524559 (+)
AMCG00015370 LOC102776143 coding downstream 140917 8552798 ~ 8572065 (+)
AMCG00015378 LOC105028067,LOC106563498,LOC106603157,LOC108412801,LOC108278882 coding downstream 180035 8591916 ~ 8596613 (+)
AMCG00015377 fkbp2,LOC106603154 coding downstream 196969 8608850 ~ 8612864 (+)
G97350 NA non-coding upstream 132384 8248111 ~ 8250285 (+)
G97347 NA non-coding upstream 137682 8242777 ~ 8244987 (+)
G97265 cfl1,LOC105028071,LOC106604708,LOC106611761 non-coding upstream 209658 8096386 ~ 8173011 (+)
G97383 NA non-coding downstream 65341 8477222 ~ 8480537 (+)
G97543 NA non-coding downstream 201374 8613255 ~ 8616320 (+)
G97547 NA non-coding downstream 212208 8624089 ~ 8624687 (+)
G97560 NA non-coding downstream 280547 8692428 ~ 8692642 (+)
G97588 NA non-coding downstream 307360 8719241 ~ 8719562 (+)
AMCG00015359 NA other upstream 70470 8307580 ~ 8312199 (+)
AMCG00015362 NA other upstream 76992 8303385 ~ 8305677 (+)
AMCG00015358 NA other upstream 79621 8295087 ~ 8303048 (+)
G97343 NA other upstream 88339 8233424 ~ 8294330 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other downstream 117137 8529018 ~ 8533404 (+)
G97513 NA other downstream 131443 8543324 ~ 8544782 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other downstream 274887 8686768 ~ 8687680 (+)
AMCG00015412 NA other downstream 385190 8797071 ~ 9124271 (+)
AMCG00015397 NA other downstream 416855 8828736 ~ 8893016 (+)

Expression


Co-expression Network