AMCG00015365 (naa40,LOC107750594,LOC107691908,LOC107749810)


Basic Information

Item Value
gene id AMCG00015365
gene name naa40,LOC107750594,LOC107691908,LOC107749810
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8342493 ~ 8433092 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015365
gggagagaaagactaTCGAGTGCAcggggagaggtggagggagCCTGCGAACTAGCAGAGGAGGGATTCACGCACAGATCCTCTTTTTTTCTGGACTCGCATCATCTTCTGTCCCCCTGTATTTTCGTGCTGTTTCCCCCCcctcggtctctctctcccgtctTTTTTTGCAGATCTCCCGGGTCCGTGTTTACAGCGCGGCGCTGGGGCAACTAGGCCACACGCTTGTGCcgccacacacagcacagcatcgGCAcgattatgttaaaaaaaaacaacaacatccatttatgtatttaaaatgtgtgctgtaAACATCATTATAGGTCTGTGGTCGATTGCTTTATACGTATATGTTCTGCGCCCACCTACAAGCAGACCCTGATGGTGTGTGTATCAATGCAATGCTTTCCCcgtgtttgtgtgcatataGTGCATGCATGTCTCTGCCCGGCCTCTCGGTACCAGCGGGTGCACATGTCCGGgctgtgtttgtggttttttgtttgtctgtggaTGGATACTTGGCCACATGTCTTAAGTTCGTGGAAACCACTAATGCCAGCCCGCCTGCATGCCGTGCTGCTGTGGGGACAAAGACAGAGTCACGTGGTTGCTCCATGGGAACCCAGCTCAAAAATAATTAGATcgaaaatgaatatgaactatGCATAACCAGTATTTTGCCCAAACGTGCAAAACCGATTTGGCAAGAATATGGATGcatttgggaaaaaatatataaaaatgttcttgCCAAATTAGTAAGTTATTTTGCTCTTTCAAATGTTTCTCCATGGATGTGATCAATACTGGAGCTTCTGTACCGTGTTAGGAATCGGATATCGGAACCGGTCCCATGTGTCCGCCACACTTCTCACCGGCCGGGAAGTGTGATAACGGAGAGGACGAGTTCTCTGCCTAACACCCccctctcttcttcctctctcccttctctcccctctctttctctttcatcCCTCTCTCCAGAGGAAGTCAAACAAGGCGAAGGAGAAGAAACAGAGGAGGCTGGAGGAGAGGGCCGCCATGGACGCCGTGTGCGCCAAGGTGGAGTCGGCCAATAAGCTGGAGGATCCACTGGCTGCTTTCCCAGTGTTCAAGAAATACGACCGGaatggGTTGAACCTTGCAATTGAGTGCCAGCGGGTGGCAGCACTGAGCCCTGACACACTGGAGTGGGCGTACGACCTGACGCGCAACAACATGCAGGCACTCTATGAACAGAGTGAGTGGGGGTGGAAGGAGCGGGAGAAGAGGGAGGAGCTTCGAGATGAAAGGGCGTGGTATCTCCTGGCCAGGGATGGAGGAGGCGGGGCATCTGGAGgatcagccacacccattgcatTCTCTCACTTTCGGTTCGACGTGGAGTGCGGGGAGGAAGTGCTGTACTGtTATGAGGTTCAGTTGGAGAGCCGTGTTCGCAGGAAAGtctcttGA
>TU121387
CTCAAGCACCCCCATTGCAAACTCAACCCGACTGTAGTAGCTCCACAGCTGTGCATCGCCTTGAGAAGCGGCCTTACAATTAATAGCTTTAGGAGATTTCTTGAAACTCACCTTTTTTTAAGCTTTAAGGATCTCTCTTtagctgcatttaaaaaaaaaaaaaaaaaNAAACTCGAGCGagtgagtgaaaaaaaaaaagtttgctcgCGCCGTTCGCGCTGTGTTCCGGCATGGGGAGGAAGTCAAACAAGGCGAAGGAGAAGAAACAGAGGAGGCTGGAGGAGAGGGCCGCCATGGACGCCGTGTGCGCCAAGGTGGAGTCGGCCAATAAGCTGGAGGATCCACTGGCTGCTTTCCCAGTGTTCAAGAAATACGACCGGaatggGTTGAACCTTGCAATTGAGTGCCAGCGGGTGGCAGCACTGAGCCCTGACACACTGGAGTGGGCGTACGACCTGACGCGCAACAACATGCAGGCACTCTATGAACAGAGTGAGTGGGGGTGGAAGGAGCGGGAGAAGAGGGAGGAGCTTCGAGATGAAAGGGCGTGGTATCTCCTGGCCAGGGATGGAGGAGGCGGGGCATCTGGAGgatcagccacacccattgcatTCTCTCACTTTCGGTTCGACGTGGAGTGCGGGGAGGAAGTGCTGTACTGtTATGAGGTTCAGTTGGAGAGCCGTGTTCGCAGGAAAGGTCTGGGCAAATTCCTCATTCAGATCCTGCAGCTCATTGCCAACAGtacACAGATGAAGAAGGTGATGTTAACAGTATTCAAACACAATCATGGCGCCTACCAGTTCTTCAGGGAGTCCTTACAGTTTGAGATTGACGAGTCCTCTCCCAGCGTGTCTGGTTGCTGTAGTGATGACTGCTCCTATGAGATCCTGAGCCGGAGGACCAAGTTTGGCGAGGGGGGGCCGCACGCGCACGGGGGG

Function

symbol description
naa40 Predicted to enable H2A histone acetyltransferase activity; H4 histone acetyltransferase activity; and peptide-serine-N-acetyltransferase activity. Predicted to be involved in N-terminal protein amino acid acetylation; histone H2A acetylation; and histone H4 acetylation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human NAA40 (N-alpha-acetyltransferase 40, NatD catalytic subunit).

NR:

description
N-alpha-acetyltransferase 40

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008080 N-acetyltransferase activity molecular_function

KEGG:

id description
K20794 NAA40, NAT4; N-alpha-acetyltransferase 40

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015365 True 1461 mRNA 0.51 6 8427695 8433092
TU121387 False 941 TUCP 0.53 9 8342493 8432120

Neighbor

gene id symbol gene type direction distance location
AMCG00015346 NA coding upstream 78325 8259173 ~ 8264168 (+)
AMCG00015344 ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding upstream 117720 8215015 ~ 8224773 (+)
AMCG00015325 LOC106603145 coding upstream 371810 7964647 ~ 7970683 (+)
AMCG00015323 ccdc85b,LOC102791751 coding upstream 440773 7901121 ~ 7901720 (+)
AMCG00015316 NA coding upstream 493490 7845592 ~ 7849003 (+)
AMCG00015364 NA coding downstream 391 8433483 ~ 8443894 (+)
AMCG00015369 sart1,LOC107568296 coding downstream 81621 8514713 ~ 8524559 (+)
AMCG00015370 LOC102776143 coding downstream 119706 8552798 ~ 8572065 (+)
AMCG00015378 LOC105028067,LOC106563498,LOC106603157,LOC108412801,LOC108278882 coding downstream 158824 8591916 ~ 8596613 (+)
AMCG00015377 fkbp2,LOC106603154 coding downstream 175758 8608850 ~ 8612864 (+)
G97350 NA non-coding upstream 92208 8248111 ~ 8250285 (+)
G97347 NA non-coding upstream 97506 8242777 ~ 8244987 (+)
G97265 cfl1,LOC105028071,LOC106604708,LOC106611761 non-coding upstream 169482 8096386 ~ 8173011 (+)
G97383 NA non-coding downstream 44130 8477222 ~ 8480537 (+)
G97543 NA non-coding downstream 180163 8613255 ~ 8616320 (+)
G97547 NA non-coding downstream 190997 8624089 ~ 8624687 (+)
G97560 NA non-coding downstream 259336 8692428 ~ 8692642 (+)
G97588 NA non-coding downstream 286149 8719241 ~ 8719562 (+)
AMCG00015359 NA other upstream 30294 8307580 ~ 8312199 (+)
AMCG00015362 NA other upstream 36816 8303385 ~ 8305677 (+)
AMCG00015358 NA other upstream 39445 8295087 ~ 8303048 (+)
G97343 NA other upstream 48163 8233424 ~ 8294330 (+)
AMCG00015356 NA other upstream 48812 8288970 ~ 8293681 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other downstream 95926 8529018 ~ 8533404 (+)
G97513 NA other downstream 110232 8543324 ~ 8544782 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other downstream 253676 8686768 ~ 8687680 (+)
AMCG00015412 NA other downstream 363979 8797071 ~ 9124271 (+)
AMCG00015397 NA other downstream 395644 8828736 ~ 8893016 (+)

Expression


Co-expression Network