AMCG00015368 (banf1,LOC108439777,LOC106523121)


Basic Information

Item Value
gene id AMCG00015368
gene name banf1,LOC108439777,LOC106523121
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8529018 ~ 8533404 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015368
ATGTCGTCCACCTCTCAGAAGCACAAGGAGTTTgCATATGTGGTCCTGGGTCAGTTCCTGGTTCTGAAGAAGGACGAGGAGCTGTTCCGCGACTGGCTGAAGGAAACGTGCGGCGCCAACTCCAAACAGCAGAACGACTGCTACAGCTGTCTGCGCGAGTGGTGTGATTCCTTCCTGTAGTGCCGCCCCACTCCACCGAGGGCGTCGCTTCTTCTCTGCCTGCTCTTCTCTCAcggtttttctttttgtgtttgtgtgttttttaagttgagtttttctttgctttgttggtataggtttatttttatttccatacaattcaaaatatattttgggatGATTCGAATCCCGGTTCGAATGCCGCTCCGGCAAACCGTTGGGAGAGCGATGGAGCGAAGTCCGAGAAAATTCATATCAGATCCGAGGATGGAAAAGCAAAGccggggggggggttgtttgctttgaaaccaTGGAGAGCTTCAGTGCTGGCCGGtgcattgtatgtgtgtgtttgcactcACTCACACGTGCGTTTTGAGGGTTTGGATTTAATCGCGGTTCTCAATTGAGTTCATGAattgttggtttaattaagaACCCACTGTGAGTAACTTGTcagaaacacataaacacacacattttatttaccaGATCTGTGGTTCTTAAGGGTTATTTCATGTTTCCAATGATGACTGAGCTCCGAATGCCACACAGCATTGCTCTCCAGGTCGAGATTTTGGGTAAAcctgactttttaaatgttttttaaaagtaaatcacCACTCGGCCCCCCGGGCCCATACCTCAGAGTCAGCCGCTGAAATACTGACAATAGTTTTTAtaccttaaaatgaaaaataaaattaaaaactgactGGTTTAATTTGGTTGATTTCAAATGGGGGggttattaataaaacaaacaaaaaaatgtaatgatgcttttaaactttattttaacgTGTTTATCCAGGAGGCGATTTAACCAGTGACGAAAGGGAGTGGGGAGGGTTGTGAATACAATCGGGGATGGCCCGGATCTCTGCACCCAGTTTTTGGGAGGCTCCAGTtttaagggggaaaaacaatGCCAAAAGGTTACAGGCCTTGAAGGCTTTACTTTGCTACTGTATGTGCCAAGAGTATCTCGGTGCAATGCATTCAACTCTCTCCAGTAGGAgggagttatttttattattactattctcTTTCATTCTGGGGGGGTTCTGAGGAGTCTCCCCACTCCTTCCGGAACTCTTGACGCCTCCCGACATTCTGACGGCCGCAGCGTCCGTGCCTCCCGTCAGGCTGCTGAACGCACTGTAAACGCTTGAGGGGGAAGAGAAGAGAGTCCGGGCACAAGCTCAGTTGGGACCCCGTCTCTCTCGGCAACAGCtttgggttttttatttttatcggGTTTATGTGTTTCAGCCaatatcatttttatgtttttaagtttatttctTGTGGACAAAGAGAGGGAAAGTGGGAGAGGAGCTCAGCAGGGCAGGGTTGGTTTCTGGCGATGCAAAATCTGGCTTTGGGAAACAAACATGAAAcgcaaaggaaagaaaaggaaaaaaaaatcaaaggagagagagagagagatgcatagAGAGGTGCTAGTTCGGTGGGCTGGTGTCCTGCCTGGCTCTGCGGTCGCTGCCTTGTGCTGAATTCGAGGTCCAGCTGGATTCAGTCTGTAGACCGTGGGGGTGGTTGCAACTCTGCCACCGATTTACCAAAATATTGGTATCTgtcgtttttttcttctttttctgacCTGTAAAATGTGATGGCAGGTTTGTCTGCAAGCTGCCCCAGCCTGTGGGGATTATGTTTAACCTTGAGTTTCAAAATGGAgctagttattttatttgttttgggtgttgaatttgttattttggtcattttattttttttaaataaaatttttAAAGTCAAATATCA
>TU121569
GCGGGGTGGGAGGGCTTGGCGGGATCAGGAAGTGCAGTTGGAATCCGAGAGCGCAGGCTGTGGAGAAACTGAAAGGAGCTCACTTTCAATAAGAGGccaggagagagacaggcacccagcagcagcagcagccagtgAGTCCGCCACCATGTCGTCCACCTCTCAGAAGCACAAGGAGTTTGTGGCCGAGCCCATGGGCGAGAAGCCGGTGATGGCCCTGGCCGGGATCGGGGAAGTTCTGGGCAAACGCCTGGAGGAGAAGGGCTTTGATAaggCATATGTGGTCCTGGGTCAGTTCCTGGTTCTGAAGAAGGACGAGGAGCTGTTCCGCGACTGGCTGAAGGAAACGTGCGGCGCCAACTCCAAACAGCAGAACGACTGCTACAGCTGTCTGCGCGAGTGGTGTGATTCCTTCCTGTAGTGCCGCCCCACTCCACCGAGGGCGTCGCTTCTTCTCTGCCTGCTCTTCTCTCAcggtttttctttttgtgtttgtgtgttttttaagttgagtttttctttgctttgttggtataggtttatttttatttccatacaattcaaaatatattttgggatGATTCGAATCCCGGTTCGAATGCCGCTCCGGCAAACCGTTGGGAGAGCGATGGAGCGAAGTCCGAGAAAATTCATATCAGATCCGAGGATGGAAAAGCAAAGccggggggggggttgtttgctttgaaaccaTGGAGAGCTTCAGTGCTGGCCGGtgcattgtatgtgtgtgtttgcactcACTCACACGTGCGTTTTGAGGGTTTGGATTTAATCGCGGTTCTCAATTGAGTTCATGAattgttggtttaattaagaACCCACTGTGAGTAACTTGTcagaaacacataaacacacacattttatttaccaGATCTGTGGTTCTTAAGGGTTATTTCATGTTTCCAATGATGACTGAGCTCCGAATGCCACACAGCATTGCTCTCCAGGTCGAGATTTTGGGTAAAcctgactttttaaatgttttttaaaagtaaatcacCACTCGGCCCCCCGGGCCCATACCTCAGAGTCAGCCGCTGAAATACTGACAATAGTTTTTAtaccttaaaatgaaaaataaaattaaaaactgactGGTTTAATTTGGTTGATTTCAAATGGGGGggttattaataaaacaaacaaaaaaatgtaatgatgcttttaaactttattttaacgTGTTTATCCAGGAGGCGATTTAACCAGTGACGAAAGGGAGTGGGGAGGGTTGTGAATACAATCGGGGATGGCCCGGATCTCTGCACCCAGTTTTTGGGAGGCTCCAGTtttaagggggaaaaacaatGCCAAAAGGTTACAGGCCTTGAAGGCTTTACTTTGCTACTGTATGTGCCAAGAGTATCTCGGTGCAATGCATTCAACTCTCTCCAGTAGGAgggagttatttttattattactattctcTTTCATTCTGGGGGGGTTCTGAGGAGTCTCCCCACTCCTTCCGGAACTCTTGACGCCTCCCGACATTCTGACGGCCGCAGCGTCCGTGCCTCCCGTCAGGCTGCTGAACGCACTGTAAACGCTTGAGGGGGAAGAGAAGAGAGTCCGGGCACAAGCTCAGTTGGGACCCCGTCTCTCTCGGCAACAGCtttgggttttttatttttatcggGTTTATGTGTTTCAGCCaatatcatttttatgtttttaagtttatttctTGTGGACAAAGAGAGGGAAAGTGGGAGAGGAGCTCAGCAGGGCAGGGTTGGTTTCTGGCGATGCAAAATCTGGCTTTGGGAAACAAACATGAAAcgcaaaggaaagaaaaggaaaaaaaaatcaaaggagagagagagagagatgcatagAGAGGTGCTAGTTCGGTGGGCTGGTGTCCTGCCTGGCTCTGCGGTCGCTGCCTTGTGCTGAATTCGAGGTCCAGCTGGATTCAGTCTGTAGACCGTGGGGGTGGTTGCAACTCTGCCACCGATTTACCAAAATATTGGTATCTgtcgtttttttcttctttttctgacCTGTAAAATGTGATGGCAGGTTTGTCTGCAAGCTGCCCCAGCCTGTGGGGATTATGTTTAACCTTGAGTTTCAAAATGGAgctagttattttatttgttttgggtgttgaatttgttattttggtcattttattttttttaaataaaatttttAAAGTCAAATATCATCCCTGTTTGGAGGAGTTTCTTTATTGATTCACAAAACCTTTCAAAACTACAGGAGGACTGAAGACGACACACGTGTGGGTGGGGGTCATGTGTCTTTTTGTGTCTGTGCAGCTGTTTGTGTGtcgtatgtctgtgtgtgtgaaatacagGGAATCAAGCACTAAATTGCATTCTGCTCCCAGGTTTACAATCTCTGTTGCTGTTGTGAATGACCTGGCATCCCCGTCTCTGTCCGCCTTCCTGTCTGGCTCAGTGAGACACC

Function

symbol description
banf1 Predicted to enable DNA binding activity. Predicted to be involved in chromosome condensation and chromosome segregation. Predicted to be located in chromosome and nucleus. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in progeria. Orthologous to human BANF1 (BAF nuclear assembly factor 1).

NR:

description
PREDICTED: barrier-to-autointegration factor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015368 False 1953 mRNA 0.44 2 8530143 8533141
TU121569 True 2457 TUCP 0.47 3 8529018 8533404

Neighbor

gene id symbol gene type direction distance location
AMCG00015369 sart1,LOC107568296 coding upstream 4459 8514713 ~ 8524559 (+)
AMCG00015364 NA coding upstream 85124 8433483 ~ 8443894 (+)
AMCG00015357 NA coding upstream 147841 8372466 ~ 8381177 (+)
AMCG00015346 NA coding upstream 264850 8259173 ~ 8264168 (+)
AMCG00015344 ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding upstream 304245 8215015 ~ 8224773 (+)
AMCG00015370 LOC102776143 coding downstream 19394 8552798 ~ 8572065 (+)
AMCG00015378 LOC105028067,LOC106563498,LOC106603157,LOC108412801,LOC108278882 coding downstream 58512 8591916 ~ 8596613 (+)
AMCG00015377 fkbp2,LOC106603154 coding downstream 75446 8608850 ~ 8612864 (+)
AMCG00015376 NA coding downstream 94367 8627771 ~ 8655109 (+)
AMCG00015381 NA coding downstream 196570 8729974 ~ 8731761 (+)
G97383 NA non-coding upstream 48481 8477222 ~ 8480537 (+)
G97350 NA non-coding upstream 278733 8248111 ~ 8250285 (+)
G97347 NA non-coding upstream 284031 8242777 ~ 8244987 (+)
G97265 cfl1,LOC105028071,LOC106604708,LOC106611761 non-coding upstream 356007 8096386 ~ 8173011 (+)
G97543 NA non-coding downstream 79851 8613255 ~ 8616320 (+)
G97547 NA non-coding downstream 90685 8624089 ~ 8624687 (+)
G97560 NA non-coding downstream 159024 8692428 ~ 8692642 (+)
G97588 NA non-coding downstream 185837 8719241 ~ 8719562 (+)
G97612 NA non-coding downstream 243813 8777217 ~ 8779046 (+)
AMCG00015365 naa40,LOC107750594,LOC107691908,LOC107749810 other upstream 95926 8342493 ~ 8433092 (+)
AMCG00015363 NA other upstream 117137 8382669 ~ 8411881 (+)
AMCG00015359 NA other upstream 216819 8307580 ~ 8312199 (+)
AMCG00015362 NA other upstream 223341 8303385 ~ 8305677 (+)
AMCG00015358 NA other upstream 225970 8295087 ~ 8303048 (+)
G97513 NA other downstream 9920 8543324 ~ 8544782 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other downstream 153364 8686768 ~ 8687680 (+)
AMCG00015412 NA other downstream 263667 8797071 ~ 9124271 (+)
AMCG00015397 NA other downstream 295332 8828736 ~ 8893016 (+)
AMCG00015390 NA other downstream 343888 8877292 ~ 8884897 (+)

Expression


Co-expression Network