AMCG00015369 (sart1,LOC107568296)


Basic Information

Item Value
gene id AMCG00015369
gene name sart1,LOC107568296
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8514713 ~ 8524559 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015369
CGAAGCGCTTCCGTGTCGTGTTTCTTTGCGTTGTGTGAACATCGTAGTGGACGGGAGAGATTTGAACGTTGTTTTGAAGTTTATTTATATACGTCTTCATTTGGAAGTTAAAACTCCAGATACATTAAAGGAAACGTCGAGGAAATAATAGTTAATGATAAGAAACTTATGAACTGCGACCATAACtgacaaagagaaacaaacGGAGACTCGGGCCGGAGcggtttgttattatttgtggtTATTACGGTGTGTTCACTCTTCACACCTCAATGCGCCGCCTAACCCGGCCTTAGCGCACATCCGTGTCCCTGGCGTTTGATTTGCCCGTTATTTTTGATCAAGGCACCCCCCCGATTTCCACCGGACCCGGCCGATTCAAGATGGGCTCCTCGAAGAAGCACAAGGAGAAGGACCGGGAGAGGGACGCCGAGGAGCGCCACCGGGAGCACAAGAAACACAAGCACAAGGACCGGGAGCGGGACCGCGAAAGGGACGGGAATAAGGACCGGGAAAAGAGGAAGCGCTCCCGGTCCAGGGAGCGAGGCGGGGGCGGCCGGGGCTCGGAGAGAGAAGGCCGGGGCAAGGGGGAGCGGAGCGGCGTGGGGGAGCCGAGGGTGAAGAAGGAGAAGCCCGACTCCAGCTACGAGGAGGCAAACTGAGGGCCAAGTTAGGCCTGAAGCCCCTGGAAGTGAACCAGACCAAGAAAGAGCTGGGCACAAAGGAGGACCCCAAGGTTGCTGAGACGATTAACCCTGTCCACCTGAAGCAGCAGGCGGAGATGCGCGAGAAACTGGCGGCACTGAAGGAGAAGAGGCTGCTGAACCAGAAACTGGGgaaGGTGAAGACGCTGGCGGAGGAGGAGTCCTGGCTGGACGACACGGCCGCCTGGGTGGAGAGGAGCCGCACGCTGGCCAAGGAGAAGGAGCTGGCCGAGAAAAGgGCGAAGCTACTGGAGGAGATGGACCAAGAGTTTGGTGTGAGCAACCTGGTGGAGGAGGAGTTCGGCCAGGCCAAGAAGGAGAGTTATGGCGCGGGGGATCTGCAGGGCCTGACTGTGCAGCACAAGGTGGACTCCTTCTCCGAGGGCCAGACAGTCATCCTCACACTGAAGGACAAGGGggtgctggaggaggaggaggacgtgCTGGTGAATGTGGGCCTGCAGGACAAGGAGCGCGCCCAGAAGAACGTGGAGCTGCGCAAGAAGAAGCCCGACTACAAGCCCtacgaggaggaggagagcgtGGACGACATGGCCGAGCTGAAGCCGCGCTCGGTGCTGTCCAAGTACGACGAGGAAATCGATGGAGAGAAGAAGGGCGGCTTCCGGCTTAGCGCAGGGGGGCAGGGTGGGGCGGCCTGGGAGCGGGAGCGGGAGCTGCAGGAGGTCCGGGAAGCGCTGCGCAGCCAGGCCGTCAGTCTGGATGGGCCGGGGCCCCGCCTCGCCTCCGAGTACTACACCCCCGACGAGATGGTGACCTTCAACAAGACGAAGCGGCGAGTGAGGAAGATCAGGAAGAAGGAGAGGCCCCTGAAGCCAGAGGAGCTGCTCCCCCTGGTGGACAAGACAGCAGACCACGACCACGGCTCCCGtgtgagGGGGCGTGGGCGGAAGCAGGAGGGAGGGGACAGCGAGGGAGGGGATGAGGAAGGGAGCGCGGCCTCCCCGAGGAAGAGGGATTCAGAGCAGCCACAGCTGTCAGACGACAGGAGAGTGGAGAACATGGACATCAGTGATGAGGACGAGATTGAGACCCCAGGTCCCACTCTGCTGGAGGAGGACGAGGCTGAGCTGGAGCTGCAGAAACAGCTGGAGAAGCAGAGGAGACTGAGGCAGAAGCAGCTGCTCAAAGACTCTGCGGAGAAGGTGGTGGAGAGAGTGCAGCAGCTAGAGGCGCCACCCCAGggcatggaggaggaggaagggggcgGCGGTGCtgagggagtgggggggcgGAGCAACATAGTTTTCAACGCCACCTCGGAGTTCTGCCGGGCGCTGGGCGACATCCCCACCTACGGGCTCTCCGGCAACAGGGAGGACCAGTCTGAAGTCATGGATTTCGAGCGGGATGAGGAACGGTCAGGTGGAGGGGGCTCGGACTCGGAGCTGGACGAGAACGTGGGTTGGAGCATGGTCAACCTGGACGAGGAGCAGAAACAGCCCGACttctcGACAGCCTCCACCACTATCCTGGATGAGGAGCCCATAGTCAATTCAGGCCTGGCTGCGGCCCTCCTGCTGTGCAAGAACAAGGGGCTGCTGGACACGCAGATGCAGAAGGTGGCGCGGGTGCGAGCACCTAAAGGAGCCCTGCCCAATGCCATGTACTGCATCGAGGACAAGATgaCGATCGATGACAAGTACAGCCGGCGGGAGGAGTACCGTGGCTTCACGCAGGACTTCAAGGAGAAGGAAAGCTACCGGCCCGACGTCAAGATCGAGTACGTGGACGACACGGGCCGCAAGCTCACGCCCAAGGAGGCCTTCAGACAGCTGTCCCACCGTTTCCATGGCAAAGGCTCTGGAAAGATGAAGACTGAGCGACGGATGAagaagctggaggaggaggcgctgttGAAGAAGATGAGCTCCAGTGACACCCCCCTGGGCACCGTGGCGCTGCTGCAGGAGAAGCAGAAGTCACAGAAGACACCCTACATCGTCCTGAGTGGGAGTGGGAAGAGCATGAATGCAAATACCATTACGAAGTAGACCAGCTGGGTGCATCTCCCCCCCAGAAGACAATCCCTCTCTGTCTGCTGACCAGAGGAGAGAGATGGTGGAGGTGCAAGAGGAGAGGACAGACCTACATCCCCAGCAGCAGCGCACATGGTTTTTCGTCTGTAAAGACTACAAACCAAAAAAGACTCTTCGTGGTCCCCTGTATCATTCCTGAAATCAAGATTGCCCCTCTTCCCTGGCCCCCATTTATCATCGATCAATAATAGTGTCTGTAATCGGTCACCTGTCCAGGGCAGTTCCCAGACAGCTGTCTGCGTGACTGGCAGAGTGCGATGTGTGAATAAATATACTTCTGGCTGTGGGGGGCCTTACTGCTGTTTCAAGACCTTGAGGGGGAGTTATAGTATGGTATTTGAACACCCCAGTTACCagttagtaaaaaaaaaaaaaaaaaaaaatgggaaaaatgcTCATCACTTATATAGCAATTACAGGAGGAGGGGGTTTGCCTGTGTACATAcgtttattaatgttattttaagtttgcttttttgggggggtgggtttgtttgtggggaaaaacaaaccacacaaaaccGGGACTGTAAGCGGGGTCAAGTCAGACCTGCCTGGcgttttaaataaacatcaagATTTGAAAGAGCTCTGTGTGGTGAAAGGTCATCTGTCTTGTACAGGGAATGCAGAGTTTTATAAACTGGAATTTGCTCTTA

Function

symbol description
sart1 Predicted to be involved in mRNA cis splicing, via spliceosome and maturation of 5S rRNA. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Orthologous to human SART1 (spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP).

NR:

description
PREDICTED: U4/U6.U5 tri-snRNP-associated protein 1

GO: NA

KEGG:

id description
K11984 SART1, HAF, SNU66; U4/U6.U5 tri-snRNP-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015369 True 3423 mRNA 0.57 19 8514713 8524559

Neighbor

gene id symbol gene type direction distance location
AMCG00015364 NA coding upstream 70819 8433483 ~ 8443894 (+)
AMCG00015357 NA coding upstream 133536 8372466 ~ 8381177 (+)
AMCG00015346 NA coding upstream 250545 8259173 ~ 8264168 (+)
AMCG00015344 ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding upstream 289940 8215015 ~ 8224773 (+)
AMCG00015325 LOC106603145 coding upstream 544030 7964647 ~ 7970683 (+)
AMCG00015370 LOC102776143 coding downstream 28239 8552798 ~ 8572065 (+)
AMCG00015378 LOC105028067,LOC106563498,LOC106603157,LOC108412801,LOC108278882 coding downstream 67357 8591916 ~ 8596613 (+)
AMCG00015377 fkbp2,LOC106603154 coding downstream 84291 8608850 ~ 8612864 (+)
AMCG00015376 NA coding downstream 103212 8627771 ~ 8655109 (+)
AMCG00015381 NA coding downstream 205415 8729974 ~ 8731761 (+)
G97383 NA non-coding upstream 34176 8477222 ~ 8480537 (+)
G97350 NA non-coding upstream 264428 8248111 ~ 8250285 (+)
G97347 NA non-coding upstream 269726 8242777 ~ 8244987 (+)
G97265 cfl1,LOC105028071,LOC106604708,LOC106611761 non-coding upstream 341702 8096386 ~ 8173011 (+)
G97543 NA non-coding downstream 88696 8613255 ~ 8616320 (+)
G97547 NA non-coding downstream 99530 8624089 ~ 8624687 (+)
G97560 NA non-coding downstream 167869 8692428 ~ 8692642 (+)
G97588 NA non-coding downstream 194682 8719241 ~ 8719562 (+)
G97612 NA non-coding downstream 252658 8777217 ~ 8779046 (+)
AMCG00015365 naa40,LOC107750594,LOC107691908,LOC107749810 other upstream 81621 8342493 ~ 8433092 (+)
AMCG00015363 NA other upstream 102832 8382669 ~ 8411881 (+)
AMCG00015359 NA other upstream 202514 8307580 ~ 8312199 (+)
AMCG00015362 NA other upstream 209036 8303385 ~ 8305677 (+)
AMCG00015358 NA other upstream 211665 8295087 ~ 8303048 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other downstream 4459 8529018 ~ 8533404 (+)
G97513 NA other downstream 18765 8543324 ~ 8544782 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other downstream 162209 8686768 ~ 8687680 (+)
AMCG00015412 NA other downstream 272512 8797071 ~ 9124271 (+)
AMCG00015397 NA other downstream 304177 8828736 ~ 8893016 (+)

Expression


Co-expression Network