AMCG00015376



Basic Information


Item Value
gene id AMCG00015376
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8627771 ~ 8655109 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00015376
agagaggagaaggaggagaaagggagaggggtgTAGTAGGACAGTGAACACACACTGTCCCTTTAAGAAGAACTGCTCTCCAATGCGCTGATAAAACACGCCTTCTTGCAGCCTGTTGAGTAAGTCCGATAGACACCGATAATTACACTTCTACACAGAAGAcgaggaaagagggagggaaaaaagaaaaagaaagaagaaaaagtcgAGTggttcgctctctctctccctccctcttcctcctcctcctctctctttctccgaGAAACACGAGAGAAGCAAGCTAAAGATCCTGGcaccggagagagagagagagagagagacgttaAAACGAGAAGAAGAGGCGCAACTCTcagggaaggaggaggaggaggaggagggacaaCGAGGAATTCGGTTTCATCGGGGAGTCACAACTGGAACTTTTGATCTGTAAACACCCGTCTAATTAAACCCCACCAATCAGAGAGACTGGCTGTGTGTCCAAGTggggaccccccccccccacacactcactcactcactgaccAACCCGACCCCACCGGACCGGCCATCGGAACCGCGCCACAGGGGGAAGGGAGCCGGTGAGGCGGCGCGGATCGGGATTCCCAGCCCGCCGGGAGTGCCGGGATGGCCGGGGCTCGTCCCGGGGTGCATGCTCTGCAGCTCAAACCCGTCTCGGTCCACGAAGCGCTGAAGAAAGGGGGCAAGTTTGTGAAATGGGACGAGgATGGCAGTGCCCATTCCCTGGTCACAATGAAGGTGGACCCAGATGGATTCTTCCTGTACTGGACTGGCTCCAACATGGAGGTGGAGCTGCTGGATATCAGCCTAATCCGGGACACCAGGACCGGAAAATATGCCAGGCTACCAAAGGACCCCAAGGTGAGAGATATGCTCGGGTTGCCCCCAGTAGAGAAGCCAGGAGAGGGCAAAGGTCAACAGGGAGACAAGTTGGCAGAGGGCAAGAATCAACAGGCTGACAAGTCCGTGGAGGTCAAGGGTCAGCAGGCGGAGAAGTCGGCGGAGAACCTGGTGACGGTGGTGTACGGCACTGACCTGGTCAACATCAACTTCCTCAACTTGCAGGCCATGGAGAAGGACTCTGCCAAGCTGTGGACGCAGGAGCTGTTTAAACTTGCCACAGACGTGCTGGCCCACAATTCCTCTCGCAACACCTTCCTATTCAAAGTgTACATCAAGTTAAAACTGCAGGTGAACCAGGACAACAAGATACCAGTGAagaatatTCTGAAGATGTTCTCGGATAAAAAGAGGGTGGAGACTGCTTTGGAGCTATGTGGTCTGTCAGCCAATCGGGGGAAGCCGTTCCTGTTCCTGGACCAGCTGACGGATTACATCAACAAGAAGCAGCGCGACTCGCGGCTCAACGAGGTGCTCCGGTACCTGGGGGGTGAGGAGAACAGCATCGTGCCCCCGGAGAGACTGGACATTATCGATGACATGTGCCAGCCCCTCAGCCACTACTTCATCAACTCCTCCCACAACACCTACCTCACAGCCGGTCAGCTGACTGGACTGTCCACAGTGGAGATGTACAGACAGGTGCTGCTGACAGGCTGTCGCTGCATCGAGCTGGACTGCTGGAAGGGGCAGGGCAAGGACGAGGAGCCAATCATCACTCACGGCTTCACTATGACGACGGATATTCCCTTCAAGATGGCAGAGTACTGTCGCTCTATCTTTGGGGATGCCCTTCTCATCGAGCCCCTGGAGAAATATCCTCTGGAACCAGGTCAGATGCTGCCCAGCCCCCAGGAGCTGCTGGGTAAGATCCTGATcaagaacaagaagaaacaCCGGCACGGTACAGTCAGCGTCCGGCGCCGGGTGTCCGAGCAAAACTCCCTACCCCTCGACACCTCCGTAGTCCAGGACCAGCCCACGCCCCCCCCAGACCGAGAGGCGGAgtcagaggaagaggaggaggaagaacaGGGGGACCCCAAAAAACCCACCTCTGATGAGgGCACGGCCAGCAGTGAGGTCAATGCCACTGAGGAGATGTCCAACCTGGTGAACTACATCGAGCCAGTCAAGTTCAAGTCCTTTGAGGTGGCCAACAAGAGGAACAAGTTCTTTGAGATGTCCTCCTTGGTGGAGACTAAAGGCATGGACATACTGAAGGGAGCGCCCACAGAGTTTGTGGAGTATCCTTTACTGCTGGACGCATCCATTTTGTACAATAAGAAGCAGCTGAGCCGTATTTACCCCAAGGGCACACGGGTCGACTCCTCCAACTACATGCCACAGATCTTCTGGAATGTGGGCTGTCAGATGGTGGCACTCAACTTCCAAACACcggACTTGCCCATGCAGTTGAATCTGGGTATATTTGAGTACAACGGGCGCAGTGGCTACCTGCTCAAACCCGAGTTCATGCGCAGGATGGACAAACACTTTGACCCCTTCACCGAGGACATCGTGGATGGCATCGTGGCCAACACTGTCAAGATCAGGaTCATCTCAGGCCAGTTTCTGACTGATAAGAAGGTGGGGGTGTATGTGGAGGTGGACATGTTTGGCCTCCCTGTGGACACAAAGCGAAAGTACCGGACGAAGACGTCCAACAACAACTCCATGGACCCTGTGTGGGACGAGGACCTCTACGTCTTCAATAAGgtgGTTCTGCCTAGTCTGGCCTCCCTGCGAGTTGCTGTGTTTGAGGAGAATGGGAAGTTCATCGGCCACCGGATCCTGCCTGTGGGAGCCATCCGGCCCGGTTACCATTACATCAACCTGAAGAATGAGCTGAACCAGCCCCTGCTGCTGTCCTCTCTGCTAGTGTACACTGAGGCCCAGGACTACATCCCCAACGAGCACCAGGAGTACGCGGACGCCCTGACGAACCCCATCTGGCATATCAGCACGCTGGACCAGCGAGAGACACAGCTGGCCGTGCTCATACAGGGCAGCGAGGGGAAGCCAGTGCAGGTGCGTGAGGACCGGCGGAGCAGCGAGCAGACGGAGCCGATCTGTCCCCCCTTGGACAGGAAGGTCAGTCTGGTGTGGCAGGGCCCACCAGCACCCCCTGCTGACACTCCTCCCAGAGACGCCCCGCCTCCCAGCATAGCACTGAAAGAGCAGAAAGAGGATCTGATTGCCACTGTGTTAGCAGACATCAAGGTGCAGGCGCTGGATGATCTGCGGCAGGAGAAGTCCTTccagaagctggagaagaagcACAACaaggagctgcaggagctgcGCAAGAAGCACCTGCGCAGACTGTGGCAGCTGAGCAAGCAGCAGCGAACCAAGAGCAGCCAGCTGCAAAGCGACAGCCTGCGCCGCCGCAGCCAGATCGAGAAGAGCCTGAAGCGCAGCCTAAAAAAGaaCGTGGGCCCCGAGGTCGTGCAGAAGCAGATGCAGGAGCTGTCAGGcgaggaggagcagcagcagcggcagcgGGAGCAGCTGCAGAGCGTGGAGCTGGTGGAGCTGCTGGAGCTGCGGAGGACACAACACAGcctggagagacagaggaaaaTGGAGCTGCTCACAGAGAGGTACCGGAAGCTGAAGGACATGGCGCAGGAGAGTCAAACTGCTCAGAACAAAAAGCTGAAGGAAATCTGTGTGAAGAAGCACATCTCTGATTCCGTGGCGCTGATCCGCAGGCTGGATGAGGCCCAGCAGGCGAGACGTCAGAGGCTGGAGACGCAGCACTCGGAAATCCTGCAGCTCATCTACAAGGAACTGCCCCtgCATCAGTGTCGACTGGAGGagcagctggagctggagaagcAGCAACTACCCGAGGAAGTCCGCAAGTTCCTGCAGACCCAGCTAGAGTCGGACGGCAAGAAGGAGCTCTTCAGCTTGTCCGCCTACGACAGCTCCGGCTCTGGACCACCGTCCAATCCCGGCACGCCTCCCATCTCTTCCCCCGACCGGAGCTGGCTGGGAGGGCGGAGCCTGGACAATAGCAACGCCTCCCTGGCCGACTCCTCTTCCTCCGGAACGCCCGTCATGTCGGAGGCGGAGCTTAATGCTGTCTAGCACTGGTGCACTATGGCCACGCCCCCTCCACCCACATACACCGACAGACACACCGATGACAACCTCATTGGACGAGAAGCCGAGGGgccgccccctctctctctccccccgtGGTCTCTCcagctttttaaacattttaattgtaattttaattttaatttaattttttatttttttaatggtattgttaaagacaaaaaatactTCTTCCTTTTCATGGCATTTTTTTAACTGTCCCGgattttatgattgtttttaatctctATGCTGCctttttggttattattttattctttgtttttgtttggttttgtgcaGCATCTGTGTCTGTTCTCTGCTAACCTTCCCAGGCCTCCCACAGCACAGTTTAAATTGGTAATGCTTTCCCCCGGCACAAGCCTATATATTGTGAGTGTGGATATCTATGGATACTACAGATTACTGCACTGTTTAAGGGGCACATAGACAATTGCATCAAAGACGTTTTGATGACTCTTGTGATGTTGGCCAGGTGTTGGCGTGTTGacactgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagtccTGGAGAGAATGAGCCCAAGAACATCGTCATGGTGGTGATGTACTCTGAGCTGGaatggttttaatttacattggcATGTTTGCAGTACCTAAAATGCAGCCACCAGAGGGAGACATTACTTTAGAAACAAGCACTTGGGATTGGAGggccagagagagagtgatttataatacaattttacatttgaattgtaatTTGAGAGCACGAGCAAGCGAGGGAATGAGCACCGCTGTGATTGGTCGAGACACACTGGGCGCTCCTGAAATTGTCCTGAATGCACAACAAGCAAATGGATTTTAGAGACCTGGCTTCAGATGCTATGAGGACAGCAGTATAAACTCAGGGGAGAAGGagcgagggggggggggggttgtaaaCTTGGCCAAGTGCGAcagagtttttttaaattattgattggaatgggctttttttttcaatttgttatgCGTGTTGGGGGGGAGGGTAGGTTTGTTAACTCTGGTTTTGATTGTCTTTGGGTTTGTAATGAtggtttgtcttttattttgtggttcGAACGTTCTGCTACTGACTCTACGAGTGGGTTGAAAGGTGGTGGGGGAGGGACGGAAAAGGGGGATGATGTGATATCATCGTCTGGTGGAGAAATAATGTCTTGTCATTTTTTAACTGTTGTtgcccatttttattttattttgtaaacggGGTGGGAACAGTTTTTGACGTagtttgcaattattattttacaaaaagatTTTTCAAGAAACTAAAAGGGAATATTTTCCTGCTTCgttgagaaaaataatattttaatgcatactttttacaaacattttcttttattagcTTCTAAACACACCCTCACTTTTATAtcaagatatatatgtatatttacgtgtgtgtgtgtatgtgtatatatatata

Function


GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
K05858 PLCB; phosphatidylinositol phospholipase C, beta

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00015376 True 5511 mRNA 0.52 29 8627771 8655109

Neighbor


gene id symbol gene type direction distance location
AMCG00015377 fkbp2,LOC106603154 coding upstream 14907 8608850 ~ 8612864 (+)
AMCG00015378 LOC105028067,LOC106563498,LOC106603157,LOC108412801,LOC108278882 coding upstream 31158 8591916 ~ 8596613 (+)
AMCG00015370 LOC102776143 coding upstream 55706 8552798 ~ 8572065 (+)
AMCG00015369 sart1,LOC107568296 coding upstream 103212 8514713 ~ 8524559 (+)
AMCG00015364 NA coding upstream 183877 8433483 ~ 8443894 (+)
AMCG00015381 NA coding downstream 74865 8729974 ~ 8731761 (+)
AMCG00015383 NA coding downstream 80852 8735961 ~ 8742485 (+)
AMCG00015382 NA coding downstream 93778 8748887 ~ 8753046 (+)
AMCG00015391 arl2 coding downstream 143124 8798233 ~ 8800278 (+)
AMCG00015389 LOC102775858 coding downstream 147318 8802427 ~ 8809201 (+)
G97547 NA non-coding upstream 3084 8624089 ~ 8624687 (+)
G97543 NA non-coding upstream 11451 8613255 ~ 8616320 (+)
G97383 NA non-coding upstream 147234 8477222 ~ 8480537 (+)
G97350 NA non-coding upstream 377486 8248111 ~ 8250285 (+)
G97347 NA non-coding upstream 382784 8242777 ~ 8244987 (+)
G97560 NA non-coding downstream 37319 8692428 ~ 8692642 (+)
G97588 NA non-coding downstream 64132 8719241 ~ 8719562 (+)
G97612 NA non-coding downstream 122108 8777217 ~ 8779046 (+)
G97618 NA non-coding downstream 128637 8783746 ~ 8783991 (+)
G97619 NA non-coding downstream 129103 8784212 ~ 8785276 (+)
G97513 NA other upstream 82989 8543324 ~ 8544782 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other upstream 94367 8529018 ~ 8533404 (+)
AMCG00015365 naa40,LOC107750594,LOC107691908,LOC107749810 other upstream 194679 8342493 ~ 8433092 (+)
AMCG00015363 NA other upstream 215890 8382669 ~ 8411881 (+)
AMCG00015359 NA other upstream 315572 8307580 ~ 8312199 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other downstream 31659 8686768 ~ 8687680 (+)
AMCG00015412 NA other downstream 141962 8797071 ~ 9124271 (+)
AMCG00015397 NA other downstream 173627 8828736 ~ 8893016 (+)
AMCG00015390 NA other downstream 222183 8877292 ~ 8884897 (+)
AMCG00015396 NA other downstream 296627 8951736 ~ 8953684 (+)

Expression



Co-expression Network