AMCG00015378 (LOC105028067,LOC106563498,LOC106603157,LOC108412801,LOC108278882)


Basic Information

Item Value
gene id AMCG00015378
gene name LOC105028067,LOC106563498,LOC106603157,LOC108412801,LOC108278882
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8591916 ~ 8596613 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015378
ATGaaattttgtttctgtacttgGGTTAaattctcctcctcctcgtctctctccctgcagacGAACATCCCGTTCCTGCAGAATGTCCTCACTAATGACCAGTTCCTGCGGGGGACTGTGGACACTCAGTTCATCGACGAGAATCCTGACCTGTTTAACCTCAAGCCCGTCCAGAACCGAGCCCAGAAACTGCTGCATTACCTGGTCAAGGCCAAAGCGTCGCCCATTGACCCCGTTGTCCCCCCAGTGCCcctggGTGAGCCCCCAGCGGGGCTGCGAGAGGTCCTGCTGAGGGAGGGTCCGGAGGGCTTTGCCAAGGCGGTGCGCCGCCAGCCCGGCCTGCTGCTCATGGACACCACATTCCGCGATGCTCACCAGTCCCTGCTGGCCACACGTGTGCGCACACACGACCTCAAGCACATCGCACCCTTCGTCGCACACAACTTCAGCGGCCTGTTCAGCCTGGAGAACTGGGGAGGGGCGACCTTCGATGTGGCGATGCGCTTCCTGTACGAGTGTCCGTGGCGACGGCTGCAGGAACTGCGCCGTTTGATCCCCAACGTGCCGTTCCAGATGCTGCTGCGCGGGGCCAACGCCGTGGGCTACACCAACTACCCTGACAATGCTGTGTTCAAGTTCTGTGAGGTGGCGAAGGAGAACGGCATGGACATCTTCCGTGTCTTTGACTCGCTCAACTACCTCCCCAACATGCTCCTGGGCATGGAGGCAGCGGGCGCGGCGGGGGGTGTGGTCGAGGCAGCCATCTCCTACACAGGCGACGTCTCGGACCCGAGCCGCACCAAGTACAGCCTGCAGTACTACCTGGACCTGGCTGAGGAGCTGGTCCGGGCCGGCACTCACATCCTGGCCATCAAGgacatGGCAGGCGTGCTGAAGCCCAGTGCGGCACGAATGCTGGTGGGGGCTCTGAGGGACCGGTTCCCCGACCTGCCAATACACATCCACTCCCACGACACGGCGGGCGCCGGGGTGGCAGCCATGCTGGCATGCGCAGAGGCCGGGGCAGACGTGGTGGACGTGGCCGTGGACTCCATGTCTGGCATGACCTCCCAGCCCAGCATGGGCGCCATAGTGGCCTGCACACAGCACACGCCCCACCACACCGGCATCGCCCTGGACAAGGTGTTTGACTACAGCGAGTACTGGGAGGTGGCACGGGGGCTGTACGCCGCCTTCGACTGCACCGCCACCATGAAGTCTGGCAACGCGGACGTGTACGAGAATGAGATCCCAGGTGGCCAGTACACTAACCTGCACTTCCAGGCGCACAGCATGGGCCTGGGCCACAAGTTCAAGGAGGTGAAGAAGGCCTACGCAGAGGCCAACAAGCTGCTGGGAGACCTGATCAAGgtGACCCCCTCCTCGAAGATCGTGGGGGACCTGGCCCAGTTCATGGTGCAGAACGGGCTGGGCCGGGCCGAGGTGTTGGAGCGGGCGGACGAGCTGTCCCTGCCGCTGTCAGTGGTGGAGTTCCTGCAGGGCCACATCGGCATCCCCCACGGGGGCTTCCCCGAGCCACTGCGCTCAAAGGTACTAAAGGACCTGCCAAGGATTGAGGGCCGCCCAGGGGCCAGCCTGCCCCCCCTGGACTTCGCAGCCCTAGAGAAGGAGATTCGCACCCGGCACGACGACGTTGCCCCGGAGGACGTGGTTTCTGCTGCGATGTACCCGCGTGTGTACGAGGAGTTCCGGGACTTCACAGCCCAGTTTGGCCCGGTCGAGAGCCTCAACACACGCCTCTTCCTGGAGGGGCCCAAGATCGCAGAGGAGTTCGAGGTGGAGCTGGAGAGGGGCAAGACTCTGCACATCAAGGCGCTGGCCCTGGGGGACCTGAACACGGCTGGACAGAGGGAGGTGTTCTTCGAGCTCAACGGCCAGCTGCGCTCAGTGCTGGTCAAGGACACAGTGGCCATGAAGGAGATGCACTTCCACCCCAAGGCCCTGAAGGACGTGAAGGGGCAGGTGGGGGCGCCCATGCCGGGCAAGGTGATGGAGCTGCGGGTGGCCGAGGGGTCGACCGTCACCAAGGGCCAGCCACTATGCGTCTTGAGCGCCATGAAGATGGAGACGGTGGTCAACAGCCCGCTGGACGGCACGGTGCGGCGCATCCACGTGCGGCCGGACATGAGCGTGGAGGGGGATGACCTCATCCTGGAGATCGAGTAG

Function

NR:

description
PREDICTED: pyruvate carboxylase, mitochondrial

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004075 biotin carboxylase activity molecular_function
GO:0004736 pyruvate carboxylase activity molecular_function

KEGG:

id description
K01958 PC, pyc; pyruvate carboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015378 True 2187 mRNA 0.64 11 8591916 8596613

Neighbor

gene id symbol gene type direction distance location
AMCG00015370 LOC102776143 coding upstream 19851 8552798 ~ 8572065 (+)
AMCG00015369 sart1,LOC107568296 coding upstream 67357 8514713 ~ 8524559 (+)
AMCG00015364 NA coding upstream 148022 8433483 ~ 8443894 (+)
AMCG00015357 NA coding upstream 210739 8372466 ~ 8381177 (+)
AMCG00015346 NA coding upstream 327748 8259173 ~ 8264168 (+)
AMCG00015377 fkbp2,LOC106603154 coding downstream 12237 8608850 ~ 8612864 (+)
AMCG00015376 NA coding downstream 31158 8627771 ~ 8655109 (+)
AMCG00015381 NA coding downstream 133361 8729974 ~ 8731761 (+)
AMCG00015383 NA coding downstream 139348 8735961 ~ 8742485 (+)
AMCG00015382 NA coding downstream 152274 8748887 ~ 8753046 (+)
G97383 NA non-coding upstream 111379 8477222 ~ 8480537 (+)
G97350 NA non-coding upstream 341631 8248111 ~ 8250285 (+)
G97347 NA non-coding upstream 346929 8242777 ~ 8244987 (+)
G97293 NA non-coding upstream 463027 8126775 ~ 8128889 (+)
G97284 NA non-coding upstream 475364 8114916 ~ 8116552 (+)
G97543 NA non-coding downstream 16642 8613255 ~ 8616320 (+)
G97547 NA non-coding downstream 27476 8624089 ~ 8624687 (+)
G97560 NA non-coding downstream 95815 8692428 ~ 8692642 (+)
G97588 NA non-coding downstream 122628 8719241 ~ 8719562 (+)
G97612 NA non-coding downstream 180604 8777217 ~ 8779046 (+)
G97513 NA other upstream 47134 8543324 ~ 8544782 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other upstream 58512 8529018 ~ 8533404 (+)
AMCG00015365 naa40,LOC107750594,LOC107691908,LOC107749810 other upstream 158824 8342493 ~ 8433092 (+)
AMCG00015363 NA other upstream 180035 8382669 ~ 8411881 (+)
AMCG00015359 NA other upstream 279717 8307580 ~ 8312199 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other downstream 90155 8686768 ~ 8687680 (+)
AMCG00015412 NA other downstream 200458 8797071 ~ 9124271 (+)
AMCG00015397 NA other downstream 232123 8828736 ~ 8893016 (+)
AMCG00015390 NA other downstream 280679 8877292 ~ 8884897 (+)
AMCG00015396 NA other downstream 355123 8951736 ~ 8953684 (+)

Expression


Co-expression Network