AMCG00015389 (LOC102775858)


Basic Information

Item Value
gene id AMCG00015389
gene name LOC102775858
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8802427 ~ 8809201 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015389
AGGAAGTGGAAACAAAAGTGGCGAAACACCGTGTGGGTCGGAGACGAGCAGACGGGGTGACTGACattgacagacagacggacGTCTCGGTGTATCGCCCCCGACGCGAATGTCTCGGAAGGCTAAGGAAGAGTACCATCGATTCTATTCGGTTACCGAGCACCGAACCCACGACAAGGGACACACGGAGTATAAAGTGACGGCGCGGtTTGTGTCAAAGAGGAGACCGGAGGATGTGAAGGagGTGGAGGTGTGGCGCCGGTACAGCGAGCTGAAGAAGCTGCATGGCGAGCTCTCCTACACTCACCGCAACCTGTTCCGCCGGCAAGAGGATCCCCAGCTCAAGGACTTCTTCAGGgggggCGAGGTGAGGAGGCCATTAGAGCAGTCCCCCCTGCCTTCCTGCCCGCTGCCCCCCCCACTCATCCCCCTGCCAGAGGGAGCCTCCGAGGGGGGTCACTTGTCCGCCCAGCCCCAGGAGGAGGGGGTGGACCTGGGCACGGAGGCAGGCGAGTCTGAGGCTGCGCGTGAGGCCTACAGCGACCTGGAGGGCAGTCCCCCCCCCACAGAGGAGCTCACTGATCGCCACATTGACAGAGCTCTCGATGGAAGGATGGAGGGAAGAAGAGCAGATGATCACAGCCCTGCCTTGCCAGAGGTGGGCAGCGACCAGTCACAGGAGGAGTTCGACTTGCTGTTTGACTCTATTGGGGTGGAGCCTGCCGAAGATGCCCCCCCCCCTCAGTGCCCGCTGTCAGACACGGACCTGGCGCTGTTTGACCCCTGTGCCAAACAAGAGCAGCAGTCAGACCACTCCCACTCCGTGCTCCTCGCCCAGCCATTGGAAGCCCAGAACCCCGCCCCGGTTGGAATGGAGTCAGCCAGTAGCCTGCTGGGGCTGGAGGGGACCGGGTCTGGGGGCGGTGCCGGGGGCGGGTACTTGGCGCAGGCGGTGGCCGAGATCCGATTggctgtggagagagagggggcggggCAATACACCACTGCCATACAGAGCTATCAGGCTGGAGTTGACATCTTACTGAGAGGGGCGCAAGgagaCCCTGATGTATCTCGTCGAGAGTCGGTGAAGAGGCGCACAGCCGAGTACATACAGCACACTGAGACCCTGCTGTCCCTGCATCCCCCCTCCCCTACAGCTCACTGAGACCCTGCTGTCCCAGCACCCCCTGTCCACTACAGCTCAAACCCCAAAGACCCCTATTTAAGCAATATAGTCAACCAAGCTGGTTTACCATGGGAACTTCCGGGTTACTCAAACCGGTGGATTGTGGGATTGCGAGGAGTTCCGGTGGTGCTTTTCTCTCTATATAATGGTTCACCTGCCTCATTTCATGTTTCATCTCTTCTCTTTTAACACACTGCACCTGGATTGTATTCGATACACCCCTCCTTaacatacacattattatttcaatgaacAATGTTTCCACCTGGACTGACAAGAACACTTAATTTGCTGGAGTGCTGTCTCTGGTTGCCGAtttaatgaatattcatgaatGCATCAAGGCTGAGGCAAAGATACTCGATCTAAGAGGCGTGGTTTGTTCACGAAAGAATAGTGACAGAGACTGGCAGCAATTAACAAAAGAATAGATAGCGGgtggattattataattattgtaattattatcattgtaaGTAGCAGTAGAAGTCGTAGTAATAGTGCCACTAAGGTGTTTGGTGTTTAATTATGGcaacacaatcaataaaaatTAGAATCTCTCTCTTCATTTTCCAGTGGATGATATTCTgtaaattttacttttttatttttaaatttgaaatacaaaaaaaaacgaacacCTCCAAGACATTAGTAGTACTGATATTAtctatttattccaaataaataataataacctacaCGATCTCTTATGTTTTGAGTTGCCACCAATCTCCGTCTATTGCAACCAAACCAGGCCTCAGTCTTGTTGTGTGCTCATCAATATTCATGAAGCAGCTACTAGAGACAGCACTTCGGGCAATAAAGTGTTCTTGTCAGGCCAGGTGAAAACAttgctcattgaaataataggGCATATACGttaaatgcaattgtttttaaaagcgcCACCAGAACTCCTTGTAGTCCCATAATACATTGTGTCTCAAAGATGGAAGAAAATGGGAATTCACTATCTGGTTTAGGTAGAGGATCTTTGGAGACCCTGCACCCCCATGCCATACAGTACACTGAGACCCTCCTGTTGAAAAAGggacgagagagagagcaaacacacagcatctcctcctcctccctccctctttctctgcaTCCTCTCAGACCCCAGGAACATTGTCGCTCTTCTCTGATTCGTCTTcactaatatatttatgttttttgatttgtaaatcttttgtatttttaaatgtgtttatttcacctCAGAGGTACGCAGCTGTTTCACTGTACAAAACACTTTgctaataatattgtattaaacaggacaaatgtttttatatatataataaattaattaatgaaaaaataaatgaa

Function

NR:

description
PREDICTED: sorting nexin-15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015389 True 2524 mRNA 0.49 8 8802427 8809201

Neighbor

gene id symbol gene type direction distance location
AMCG00015391 arl2 coding upstream 2149 8798233 ~ 8800278 (+)
AMCG00015382 NA coding upstream 49381 8748887 ~ 8753046 (+)
AMCG00015383 NA coding upstream 59942 8735961 ~ 8742485 (+)
AMCG00015381 NA coding upstream 70666 8729974 ~ 8731761 (+)
AMCG00015376 NA coding upstream 147318 8627771 ~ 8655109 (+)
AMCG00015392 NA coding downstream 16311 8825512 ~ 8831714 (+)
AMCG00015395 NA coding downstream 117301 8926502 ~ 8929776 (+)
AMCG00015399 NA coding downstream 155259 8964460 ~ 8965650 (+)
AMCG00015406 NA coding downstream 247572 9056773 ~ 9063476 (+)
AMCG00015413 NA coding downstream 318834 9128035 ~ 9138925 (+)
G97620 NA non-coding upstream 11760 8789560 ~ 8790667 (+)
G97619 NA non-coding upstream 17151 8784212 ~ 8785276 (+)
G97618 NA non-coding upstream 18436 8783746 ~ 8783991 (+)
G97612 NA non-coding upstream 23381 8777217 ~ 8779046 (+)
G97588 NA non-coding upstream 82865 8719241 ~ 8719562 (+)
G97640 NA non-coding downstream 102813 8912014 ~ 8964118 (+)
G97650 NA non-coding downstream 133223 8942424 ~ 8950080 (+)
G97663 vps51 non-coding downstream 174301 8983502 ~ 8984908 (+)
G97676 NA non-coding downstream 215444 9024645 ~ 9030399 (+)
G97623 NA non-coding downstream 258742 9067943 ~ 9072295 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other upstream 114747 8686768 ~ 8687680 (+)
G97513 NA other upstream 257645 8543324 ~ 8544782 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other upstream 269023 8529018 ~ 8533404 (+)
AMCG00015365 naa40,LOC107750594,LOC107691908,LOC107749810 other upstream 369335 8342493 ~ 8433092 (+)
AMCG00015397 NA other downstream 19535 8828736 ~ 8893016 (+)
AMCG00015390 NA other downstream 68091 8877292 ~ 8884897 (+)
AMCG00015396 NA other downstream 142535 8951736 ~ 8953684 (+)
AMCG00015398 NA other downstream 162265 8971466 ~ 8978004 (+)
AMCG00015407 slc25a45 other downstream 220356 9029557 ~ 9036615 (+)

Expression


Co-expression Network