AMCG00015390


Basic Information

Item Value
gene id AMCG00015390
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8877292 ~ 8884897 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015390
ATGCTGGGCTGTGGGGGGGTGCTGGGCTGGTGTGCACTCTGCCAGGTGGACGTGCTGGACCAGGACAGCGGCTACTACGGCTCGGCAGGGCGGCTGCAGCAGGCCAGCCCCTGCAGCAACGGCTACGTCTACATCCCACTGGCCTTCGCGGGGATGCTGTACGTGGTCTACCTGGTGGAGTGCTGGCACTGCTTCAGCCAGAGTGCCGCGCTGGCCCGGGTGGAGATCGGCGATGTGTACGAGCGCGTCCAGCGGCTGCAGCGTTCCACCCCCTGCATCTGGTGGAAGGCCATCAGCTACCACTACGTGCGCCGGACCCGGCAGGTGACGCGCTACCGCAATGGCGATGCCTACACCACCACACAGGTGTACCATGAGCGGGTCAACACGCACGTGGCCGGCGCCGAGTTCGACTATGGTGCCCATGGAGTGCGGGACGTTTCCAAGGAGCTGCTGGGCCTGCACGACCACCCGGCCACCCGCCTGCGCTTCACCAAGTGCTTCAGCTTCGCCAGCGCTGGTGCCGAGGCAGCCTACCTGACCCAGCGGGCCCGCTTCTTCGGCGACAACGAGGGCCTGGACGACTACATGGAGGCGCGTGAGGGCATGCACCTGAAGAATGTGGACTTCCGCGAGCACATGGTGGCCTTCCCCGACCCTCGGCGCCCGCCCTGGCACACCCGCCGGCCCCTCTACTGGGCTGCCTCCCTGCTTCTGCTCTCCTGGCCACTGCGGGTTGTCTCTGAGTACCGCACCGCCTACGTGCACTACCACGTGGAGAAGCTGTTTGGGCTGGAtgaggaagggggtgggggcacGCCCTCAGAGGAAGGAGGTGGCGGAGGGGCGGGGCTGGGGGGCGGCGGCGGAGGCATCCCCCGGGTTAACACCATCGACCTGACTGAGCTGGAGTGGCACATACGCTCCAACCAGCAAGTGGTGCCCAGCTACTCTGAGGCACTACTGATGGACCTGGCCACCTCGGCCTCTgcaggtgggggggtgggtggcACCAGCGGGGTGGGAGGGGTCAGCCTGCCTGGGGGCTTCCCAGCCTCCTCGGTCCAAGGATGCGGCCGCTGCTGCCCCCGCTCCCTCAGCAGCACCTCCCTGCCCCCGCTGCGCTGTGCACGCACCCCCaaccccttctctctcccccccggCCTCTACAACCATCCCCCACTCCCTGCGCCAACCTCGACCGCCGCCGCTCCCCCCCAGGCCAGCTCCCGCCTGCCTTTCAGCCGCAGTCGCTTCTCCCTCGGCCTCCTTCAGCCCGGCCGGCGCGGGCGGCTCTTCCGCAGTCTCAGCGGACGGGTGGACGAGGCCAGCTTTGCTGACGATGAAGAGAGCAGGGCGCTGGGCcctggggaggaggaggagggggaggaggaagaggaggaagctggggaggaggtggagggggaggaaggcggagagggagagcaggaggtAGGGGAAAGAGGCCGGCGGCGGGAGAGGAGGCGGCGGAGGAGATGGCGGAGGAGGCGGAGGTGGCGGAGGAGGCGGAGGGGAGtagtggtggggggtggggatggaggaggaggaggaggagggggagagggggaagaggaagaagaggaggaagtgGGTGGGGAGGATGACAGCCCCCCCTCTTATCGGGACGCGCTGTCCTTCCCCGTGCTCATCGTCCATGGCGCCGAGAGCTGTCACCGCGATAACCCCCTCTTGCCCCGGCAACGTCCCCCcgcacccccaccacccccctgCCTCGCGCCCACTGGGACGGCGCTGTGA
>TU121749
GCAGAGCGGGCCGCGGGAGGAGCCGGACCGAGGCGGCGATGCAAGGAGTGACGGTCACGGGAGAAGCGCCCACGCTGAGCCAGGGCGAGAGGGAGGCGCAGCGGCCCCTGAAGCAGTCCCTGAGCGGATCCCTGTGCCGGGAGTCCCACTGGAAGTGCCTGGTCCTGACAGTGCTGATGCTGGGCTGTGGGGGGGTGCTGGGCTGGTGTGCACTCTGCCAGGTGGACGTGCTGGACCAGGACAGCGGCTACTACGGCTCGGCAGGGCGGCTGCAGCAGGCCAGCCCCTGCAGCAACGGCTACGTCTACATCCCACTGGCCTTCGCGGGGATGCTGTACGTGGTCTACCTGGTGGAGTGCTGGCACTGCTTCAGCCAGAGTGCCGCGCTGGCCCGGGTGGAGATCGGCGATGTGTACGAGCGCGTCCAGCGGCTGCAGCGTTCCACCCCCTGCATCTGGTGGAAGGCCATCAGCTACCACTACGTGCGCCGGACCCGGCAGGTGACGCGCTACCGCAATGGCGATGCCTACACCACCACACAGGTGTACCATGAGCGGGTCAACACGCACGTGGCCGGCGCCGAGTTCGACTATGGTGCCCATGGAGTGCGGGACGTTTCCAAGGAGCTGCTGGGCCTGCACGACCACCCGGCCACCCGCCTGCGCTTCACCAAGTGCTTCAGCTTCGCCAGCGCTGGTGCCGAGGCAGCCTACCTGACCCAGCGGGCCCGCTTCTTCGGCGACAACGAGGGCCTGGACGACTACATGGAGGCGCGTGAGGGCATGCACCTGAAGAATGTGGACTTCCGCGAGCACATGGTGGCCTTCCCCGACCCTCGGCGCCCGCCCTGGCACACCCGCCGGCCCCTCTACTGGGCTGCCTCCCTGCTTCTGCTCTCCTGGCCACTGCGGGTTGTCTCTGAGTACCGCACCGCCTACGTGCACTACCACGTGGAGAAGCTGTTTGGGCTGGAtgaggaagggggtgggggcacGCCCTCAGAGGAAGGAG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG:

id description
ko04725 Cholinergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015390 True 1779 mRNA 0.69 1 8883119 8884897
TU121749 False 1011 TUCP 0.68 2 8877292 8883953

Neighbor

gene id symbol gene type direction distance location
AMCG00015392 NA coding upstream 45578 8825512 ~ 8831714 (+)
AMCG00015389 LOC102775858 coding upstream 68091 8802427 ~ 8809201 (+)
AMCG00015391 arl2 coding upstream 77014 8798233 ~ 8800278 (+)
AMCG00015382 NA coding upstream 124246 8748887 ~ 8753046 (+)
AMCG00015383 NA coding upstream 134807 8735961 ~ 8742485 (+)
AMCG00015395 NA coding downstream 41605 8926502 ~ 8929776 (+)
AMCG00015399 NA coding downstream 79563 8964460 ~ 8965650 (+)
AMCG00015406 NA coding downstream 171876 9056773 ~ 9063476 (+)
AMCG00015413 NA coding downstream 243138 9128035 ~ 9138925 (+)
AMCG00015414 NA coding downstream 254307 9139204 ~ 9139449 (+)
G97620 NA non-coding upstream 86625 8789560 ~ 8790667 (+)
G97619 NA non-coding upstream 92016 8784212 ~ 8785276 (+)
G97618 NA non-coding upstream 93301 8783746 ~ 8783991 (+)
G97612 NA non-coding upstream 98246 8777217 ~ 8779046 (+)
G97588 NA non-coding upstream 157730 8719241 ~ 8719562 (+)
G97640 NA non-coding downstream 27117 8912014 ~ 8964118 (+)
G97650 NA non-coding downstream 57527 8942424 ~ 8950080 (+)
G97663 vps51 non-coding downstream 98605 8983502 ~ 8984908 (+)
G97676 NA non-coding downstream 139748 9024645 ~ 9030399 (+)
G97623 NA non-coding downstream 183046 9067943 ~ 9072295 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other upstream 189612 8686768 ~ 8687680 (+)
G97513 NA other upstream 332510 8543324 ~ 8544782 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other upstream 343888 8529018 ~ 8533404 (+)
AMCG00015365 naa40,LOC107750594,LOC107691908,LOC107749810 other upstream 444200 8342493 ~ 8433092 (+)
AMCG00015396 NA other downstream 66839 8951736 ~ 8953684 (+)
AMCG00015398 NA other downstream 86569 8971466 ~ 8978004 (+)
AMCG00015407 slc25a45 other downstream 144660 9029557 ~ 9036615 (+)
AMCG00015445 LOC102291110,LOC108440839,LOC107679294,LOC107731944,LOC102201806,LOC102799004,LOC108268318,LOC107558438,LOC570544 other downstream 739692 9624589 ~ 9631892 (+)
G98000 NA other downstream 821200 9706097 ~ 9710729 (+)

Expression


Co-expression Network