AMCG00015396


Basic Information

Item Value
gene id AMCG00015396
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8951736 ~ 8953684 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015396
CTGCTTTCACACGTTGTGTAAGTTATGTATCAAGgcatcccacaatgcaccgcaCGGCCCTGGCGCTGCGCTGTGTCTGCCGTCACTGACCCGCTCCGCCCGGCACCATGAGCAGTGTCACCTGGATCACCTACTCCGGGCTCATCGCGGGGGCCGTGGGGGTGGCGTGCGGGTATTGGATGGTCACTGCACCGGGGGAGCAACGCCGGAGAGACATACTGAAGGACCTGCCGGAGTCCAACCCGCTGCGGCGAGAGGAGACCCGGCGTCTGAACACGTTGCAGCTGCAGGTGCTGAAGGAGGCGGCCGAGACCAACGAGAACGTGTCCCGCCGCTTCGGGAAGTAGTGCGCCGGACCAGGCAGggacgggacaggacaggagaCGCACTCCTCTGCATCTGCACCCTCTTGGGTGAATGTCACACACCGGGGGAACCATTTCACAGGCGCACCGGAAGCCGGGGCCGCCTCTTCCGGCGCAGAAGCGACTGCGGTCCACAACCCGGAAGGAGGAGCGTGTGAACTGGGTGACACGATTAACAATCATACATGCTACGCGTTTGAGCGACGCAGCGACTCCTCCATGTCTGCAAACCCGGGCGCGCCGTCCCCGGCCCAGGCCTCCCCGGCGCCGCTGTTCGGGAGCTGCTGGAGCTGCCGGCTTCTGTGCGGCTCCGGGCTGCTGCTGGCCGGCGGGTACGTATTCATGGCGGCCCGGGGCGTGATGAAGAAGGGCGGCGCGACCTCCATGGGGACGGTGGCTCAGATCGCCTTCGCTGCCAGTCTGGCAGCCTGGGGCATAGTTGTGATGGCGGACCCTGTGGGAAAGTCCAAGAGGAAGAGCTGatggaccccccccccccccccccggtgaCCTGTACTGACTGGCAGAGCAGTGTGGACACAGCGCACTCAGATGTGATGTCACCCTGTGGGATCACGGCGTCCTCAGGCACAGACTACTGAGAATAATAGTCTTCATCTTGAGGTTGATTTggattgtaaataaatgttggaACAGAATCAGAACTGTGATGGAGGAG
>TU121758
CCCTGGCGCTGCGCTGTGTCTGCCGTCACTGACCCGCTCCGCCCGGCACCATGAGCAGTGTCACCTGGATCACCTACTCCGGGCTCATCGCGGGGGCCGTGGGGGTGGCGTGCGGGTATTGGATGGTCACTGCACCGGGGGAGCAACGCCGGAGAGACATACTGAAGGACCTGCCGGAGTCCAACCCGCTGCGGCGAGAGGAGACCCGGCGTCTGAACACGTTGCAGCTGCAGGTGCTGAAGGAGGCGGCCGAGACCAACGAGAACGTGTCCCGCCGCTTCGGGAAGTAGTGCGCCGGACCAGGCAGggacgggacaggacaggagaCGCACTCCTCTGCATCTGCACCCTCTTGTGTGTATGACTTTGTAACCGCTCAAAATCCAGGGAAGGTCTGTCCAGGAGCggtgttttctgtctttctgtgaaCGCCTTCCGCTGTATTataatgtgtacaaatgtgattatttcccttttcaataaACGAGTTCTATAGACattcaatgtaaataaatccaATAAAGTTATGAAATAAAGCATTCGCACTGTGTTCACGTCTGTTCTGCCGAAGGGGTGAATGTCACACACCGGGGGAACCATTTCACAGGCGCACCGGAAGCCGGGGCCGCCTCTTCCGGCGCAGAAGCGACTGCGGTCCACAACCCGGAAGGAGGAGCGTGTGAACTGGGGTAAGATCGGCGTGCGAGGTCGCGGCGGGGTAACGTGTTGGCGGCTACTGGTTTAAGTGAATTGATGATGCATGTGTTACTTAGACAATAAATGCCTGCACAGTTAAAACGACAGTATCGTGGAAGTGTATAATCTCTCTCGCTATACATATCTCAATTCATTTTTCCCAAAAGTGACACGATTAACAATCATACATGCTACGCGTTTGAGCGACGCAGCGACTCCTCCATGTCTGCAAACCCGGGCGCGCCGTCCCCGGCCCAGGCCTCCCCGGCGCCGCTGTTCGGGAGCTGCTGGAGCTGCCGGCTTCTGTGCGGCTCCGGGCTGCTGCTGGCCGGCGGGTACGTATTCATGGCGGCCCGGGGCGTGATGAAGAAGGGCGGCGCGACCTCCATGGGGACGGTGGCTCAGATCGCCTTCGCTGCCAGTCTGGCAGCCTGGGGCATAGTTGTGATGGCGGACCCTGTGGGAAAGTCCAAGAGGAAGAGCTGatggaccccccccccccccccccggtgaCCTGTACTGACTGGCAGAGCAGTGTGGACACAGCGCACTCAGATGTGATGTCACCCTGTGGGATCACGGCGTCCTCAGGCACAGACTACTGAGAATAATAGTCTTCATCTTGAGGTTGATTTggattgtaaataaatgttggaACAGAATCAGAACTGTG
>TU121759
CCCTGGCGCTGCGCTGTGTCTGCCGTCACTGACCCGCTCCGCCCGGCACCATGAGCAGTGTCACCTGGATCACCTACTCCGGGCTCATCGCGGGGGCCGTGGGGGTGGCGTGCGGGTATTGGATGGTCACTGCACCGGGGGAGCAACGCCGGAGAGACATACTGAAGGACCTGCCGGAGTCCAACCCGCTGCGGCGAGAGGAGACCCGGCGTCTGAACACGTTGCAGCTGCAGGTGCTGAAGGAGGCGGCCGAGACCAACGAGAACGTGTCCCGCCGCTTCGGGAAGTAGTGCGCCGGACCAGGCAGggacgggacaggacaggagaCGCACTCCTCTGCATCTGCACCCTCTTGTGTGTATGACTTTGTAACCGCTCAAAATCCAGGGAAGGTCTGTCCAGGAGCggtgttttctgtctttctgtgaaCGCCTTCCGCTGTATTataatgtgtacaaatgtgattatttcccttttcaataaACGAGTTCTATAGACattcaatgtaaataaatccaATAAAGTTATGAAATAAAGCATTCGCACTGTGTTCACGTCTGTTCTGCCGAAGGGGTGAATGTCACACACCGGGGGAACCATTTCACAGGCGCACCGGAAGCCGGGGCCGCCTCTTCCGGCGCAGAAGCGACTGCGGTCCACAACCCGGAAGGAGGAGCGTGTGAACTGGGTGACACGATTAACAATCATACATGCTACGCGTTTGAGCGACGCAGCGACTCCTCCATGTCTGCAAACCCGGGCGCGCCGTCCCCGGCCCAGGCCTCCCCGGCGCCGCTGTTCGGGAGCTGCTGGAGCTGCCGGCTTCTGTGCGGCTCCGGGCTGCTGCTGGCCGGCGGGTACGTATTCATGGCGGCCCGGGGCGTGATGAAGAAGGGCGGCGCGACCTCCATGGGGACGGTGGCTCAGATCGCCTTCGCTGCCAGTCTGGCAGCCTGGGGCATAGTTGTGATGGCGGACCCTGTGGGAAAGTCCAAGAGGAAGAGCTGatggaccccccccccccccccccggtgaCCTGTACTGACTGGCAGAGCAGTGTGGACACAGCGCACTCAGATGTGATGTCACCCTGTGGGATCACGGCGTCCTCAGGCACAGACTACTGAGAATAATAGTCTTCATCTTGAGGTTGATTTggattgtaaataaatgttggaACAGAATCAGAACTGTG
>TU121760
CCCTGGCGCTGCGCTGTGTCTGCCGTCACTGACCCGCTCCGCCCGGCACCATGAGCAGTGTCACCTGGATCACCTACTCCGGGCTCATCGCGGGGGCCGTGGGGGTGGCGTGCGGGTATTGGATGGTCACTGCACCGGGGGAGCAACGCCGGAGAGACATACTGAAGGACCTGCCGGAGTCCAACCCGCTGCGGCGAGAGGAGACCCGGCGTCTGAACACGTTGCAGCTGCAGGTGCTGAAGGAGGCGGCCGAGACCAACGAGAACGTGTCCCGCCGCTTCGGGAAGTAGTGCGCCGGACCAGGCAGggacgggacaggacaggagaCGCACTCCTCTGCATCTGCACCCTCTTGGGTGAATGTCACACACCGGGGGAACCATTTCACAGGCGCACCGGAAGCCGGGGCCGCCTCTTCCGGCGCAGAAGCGACTGCGGTCCACAACCCGGAAGGAGGAGCGTGTGAACTGGGGTAAGATCGGCGTGCGAGGTCGCGGCGGGGTAACGTGTTGGCGGCTACTGGTTTAAGTGAATTGATGATGCATGTGTTACTTAGACAATAAATGCCTGCACAGTTAAAACGACAGTATCGTGGAAGTGTATAATCTCTCTCGCTATACATATCTCAATTCATTTTTCCCAAAAGTGACACGATTAACAATCATACATGCTACGCGTTTGAGCGACGCAGCGACTCCTCCATGTCTGCAAACCCGGGCGCGCCGTCCCCGGCCCAGGCCTCCCCGGCGCCGCTGTTCGGGAGCTGCTGGAGCTGCCGGCTTCTGTGCGGCTCCGGGCTGCTGCTGGCCGGCGGGTACGTATTCATGGCGGCCCGGGGCGTGATGAAGAAGGGCGGCGCGACCTCCATGGGGACGGTGGCTCAGATCGCCTTCGCTGCCAGTCTGGCAGCCTGGGGCATAGTTGTGATGGCGGACCCTGTGGGAAAGTCCAAGAGGAAGAGCTGatggaccccccccccccccccccggtgaCCTGTACTGACTGGCAGAGCAGTGTGGACACAGCGCACTCAGATGTGATGTCACCCTGTGGGATCACGGCGTCCTCAGGCACAGACTACTGAGAATAATAGTCTTCATCTTGAGGTTGATTTggattgtaaataaatgttggaACAGAATCAGAACTGTG

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03010 Ribosome
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015396 False 1044 mRNA 0.63 5 8951736 8953684
TU121758 True 1369 TUCP 0.57 3 8951793 8953675
TU121759 False 1195 TUCP 0.59 4 8951793 8953675
TU121760 False 1152 TUCP 0.61 4 8951793 8953675

Neighbor

gene id symbol gene type direction distance location
AMCG00015395 NA coding upstream 21960 8926502 ~ 8929776 (+)
AMCG00015392 NA coding upstream 120022 8825512 ~ 8831714 (+)
AMCG00015389 LOC102775858 coding upstream 142535 8802427 ~ 8809201 (+)
AMCG00015391 arl2 coding upstream 151458 8798233 ~ 8800278 (+)
AMCG00015382 NA coding upstream 198690 8748887 ~ 8753046 (+)
AMCG00015399 NA coding downstream 10776 8964460 ~ 8965650 (+)
AMCG00015406 NA coding downstream 103089 9056773 ~ 9063476 (+)
AMCG00015413 NA coding downstream 174351 9128035 ~ 9138925 (+)
AMCG00015414 NA coding downstream 185520 9139204 ~ 9139449 (+)
AMCG00015416 NA coding downstream 201814 9155498 ~ 9175483 (+)
G97650 NA non-coding upstream 1656 8942424 ~ 8950080 (+)
G97620 NA non-coding upstream 161069 8789560 ~ 8790667 (+)
G97619 NA non-coding upstream 166460 8784212 ~ 8785276 (+)
G97618 NA non-coding upstream 167745 8783746 ~ 8783991 (+)
G97612 NA non-coding upstream 172690 8777217 ~ 8779046 (+)
G97663 vps51 non-coding downstream 29818 8983502 ~ 8984908 (+)
G97676 NA non-coding downstream 70961 9024645 ~ 9030399 (+)
G97623 NA non-coding downstream 114259 9067943 ~ 9072295 (+)
G97737 NA non-coding downstream 266152 9219836 ~ 9220284 (+)
G97741 sf3b2 non-coding downstream 268952 9222636 ~ 9223257 (+)
AMCG00015397 NA other upstream 58720 8828736 ~ 8893016 (+)
AMCG00015390 NA other upstream 66839 8877292 ~ 8884897 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other upstream 264056 8686768 ~ 8687680 (+)
G97513 NA other upstream 406954 8543324 ~ 8544782 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other upstream 418332 8529018 ~ 8533404 (+)
AMCG00015398 NA other downstream 17782 8971466 ~ 8978004 (+)
AMCG00015407 slc25a45 other downstream 75873 9029557 ~ 9036615 (+)
AMCG00015445 LOC102291110,LOC108440839,LOC107679294,LOC107731944,LOC102201806,LOC102799004,LOC108268318,LOC107558438,LOC570544 other downstream 670905 9624589 ~ 9631892 (+)
G98000 NA other downstream 752413 9706097 ~ 9710729 (+)
G98025 NA other downstream 803389 9757073 ~ 9760688 (+)

Expression


Co-expression Network