AMCG00015397


Basic Information

Item Value
gene id AMCG00015397
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8828736 ~ 8893016 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015397
atgCGGAGAGGGTGGCTGGAGAAAGAGGTAGAAGGAGTtgaagagagggggagggagatggAAAGAGCCTCCATCATGGGCCAACAGGAGGCTGCGAGCCAGAGACCCGTTAGACCAGCGGGGAGCCAGGCAGCCCGCCGCGtgatGTCTCGTGACCAGGTGGAGTCGGTGGTGCGCAGTGTGGAGACCCTGCTCGCCGAGGCGGGGGCCCTGAGGGACCGCTGCCGGCGCCAGAACGAGGAGGTGGCTGTGGCGACGCAGGCCCTGCGGGAGGAGGGGGCGGAGCTGGCGCAGCGGTGTGTGCAGGTGCAGGTGGACATGGCCGAGCTGCGCAGGCACCTGGATGAGCTGCAGGACACCCGGGTCGCGATCGAGGCCCGAGAGAGGCAGGTCCGCAAACTGAGCAAACAACTCTga
>TU121740
gagagggagagggagagagagaggcgtcCAAAACTGCGTCCGTCGTGTCAgagtgttatttattgatttattattttatttacttccaCAAGAAGCGACCGAAGAAATCTAGAAGAACCGACACAAACTGATTGCGCTAATATCGCAAATCCCCGCAGGAGCCAGAGACCCGTTAGACCAGCGGGGAGCCAGGCAGCCCGCCGCGGTGCGACCCTCCGCCGGGCAGGACGCCACCGATACCGAATCTCTGAAGCTCTGACCGGCCTGACTCGACCGCTGCGcccccctctctctctgcagtgatGTCTCGTGACCAGGTGGAGTCGGTGGTGCGCAGTGTGGAGACCCTGCTCGCCGAGGCGGGGGCCCTGAGGGACCGCTGCCGGCGCCAGAACGAGGAGGTGGCTGTGGCGACGCAGGCCCTGCGGGAGGAGGGGGCGGAGCTGGCGCAGCGGTGTGTGCAGGTGCAGGTGGACATGGCCGAGCTGCGCAGGCACCTGGATGAGCTGCAGGACACCCGGGTCGCGATCGAGGCCCGAGAGAGGCAGGTCCGCAAACTGAGCAAACAACTCTgagaaggggaggggagagaaagagaggaggagggaaaggagTGGGAGAGAGGATAGGGAGATAGGACAGCTTATAGGCACAGAGAATAGGAGAGGAATCTGCAGAGACAGGATACTGCTTATAGACactgagagagatggagagactgGGTGTGGAgttgagagagggagggggaggatcAGGGCATAAttcagtctgggcccctatagtacagtccccacagcgccgGCTCCAGTCCGGGCCCCTATAGTATAGTCCCCCCACAGTGCCACTCTGGGCCCCTATAGTCCAGTCCCCCCACAGTGCCACTCTGGGCCCCTATAGTCCAGTCCCCACTGCGCCTGCTCCAGTCTGGTTCTTATaagtacatacaaatacaaaaatagagtGTAAAGTTTAATACACAGTAAAGTCAGTACTGAGGAGTTCTCCACATCCTAAATAACAACATGGCACAAGAACAACATGCCCTTGACATCGGCTCCCCATACAAAAGACcaaaatacttaatttcatTGGCTTTAACAATAAATCTGAACACAGACGCACAGGGCACACAATTAGCACAACCGCAGCAGATACACTCGGAACAAGTAACGCAGAAGGCACCAAGGCATGTACACACATACGAACACACGtgcactgaaaaacaacaatattggCAGAGGCAGCAGTAGGATCATTAGtgcaaaataaggaaaataaaaaagtgtataGATAttcaaatctttaaaaaataacataaggTACAAAGCAGGCTCAGTGAGGCCCCAGTCTCACCTCGGATTTGGCACTGCGGGTGAGAATGACGAAAGGACGAAACAGCCAGGAAAACATAGAGCAAAGCCAGGCTGCCTCGCCAAGACAATGTAATCTATTACATTTCCAAATAATGTggttcaattaaatgtaatagcATACAATGTCACAAGTGATATAAGGTAGTGCAGTGCAAagttatatacatttacaatgtaatatattactgtacagtacaatgcaatttaataaaatgttatgtaattcaatgtaatgtatGCCTGTGCAGtgcaatgtaatttaataaacagcAGGACTGACTGTCACTGTgagatttgtattgtttctgtgGTCAAGTCAGTAACACTGGcagccacacacactgaccgctctgacacacacacactgaccgctctgacacacacacactgaccgctctgatacacacacactgaccgctctgacacacacacacactgaccgcTCTCCCACATACAGGCACACTCAGATTCACACTGGCAGCCACTGGcagccacacacactgaccgctctgatacacacacactgaccgcTCTCCCACATACAGGCACACTCAGATTCACACTCGCATTCATACAATCTCACACTCAAAGTCACACTCAAGCCGACACTGCGCACACCCAcaaacactctctcacacacactgattggGGGCTCTCTGTGGCCAGTACAGTGGGGGAAAGGTCAGGGGGTCAGTGTGGCCACAGCAGAGTGTAGTGGAGCGGGGCTGGGGGTGGTCAGTGTGGGCGGCTGGGGCGGTGGAAGATGGGCTCGGTCTCCGAGGCGCTCCACTCGGGGTCGCCCCCACTCAGTCCACTGAACTCTGACCCCTGGCGGCGCTGCACCACCAACAGCGCCAGAATCAGCACCCAGAAGAAGAAGTTCACCCACACGGATgt

Function

GO:

id name namespace
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015397 False 417 mRNA 0.67 4 8886176 8891321
TU121740 True 2270 TUCP 0.52 3 8828736 8893016

Neighbor

gene id symbol gene type direction distance location
AMCG00015389 LOC102775858 coding upstream 19535 8802427 ~ 8809201 (+)
AMCG00015391 arl2 coding upstream 28458 8798233 ~ 8800278 (+)
AMCG00015382 NA coding upstream 75690 8748887 ~ 8753046 (+)
AMCG00015383 NA coding upstream 86251 8735961 ~ 8742485 (+)
AMCG00015381 NA coding upstream 96975 8729974 ~ 8731761 (+)
AMCG00015395 NA coding downstream 33486 8926502 ~ 8929776 (+)
AMCG00015399 NA coding downstream 71444 8964460 ~ 8965650 (+)
AMCG00015406 NA coding downstream 163757 9056773 ~ 9063476 (+)
AMCG00015413 NA coding downstream 235019 9128035 ~ 9138925 (+)
AMCG00015414 NA coding downstream 246188 9139204 ~ 9139449 (+)
G97620 NA non-coding upstream 38069 8789560 ~ 8790667 (+)
G97619 NA non-coding upstream 43460 8784212 ~ 8785276 (+)
G97618 NA non-coding upstream 44745 8783746 ~ 8783991 (+)
G97612 NA non-coding upstream 49690 8777217 ~ 8779046 (+)
G97588 NA non-coding upstream 109174 8719241 ~ 8719562 (+)
G97640 NA non-coding downstream 18998 8912014 ~ 8964118 (+)
G97650 NA non-coding downstream 49408 8942424 ~ 8950080 (+)
G97663 vps51 non-coding downstream 90486 8983502 ~ 8984908 (+)
G97676 NA non-coding downstream 131629 9024645 ~ 9030399 (+)
G97623 NA non-coding downstream 174927 9067943 ~ 9072295 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other upstream 141056 8686768 ~ 8687680 (+)
G97513 NA other upstream 283954 8543324 ~ 8544782 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other upstream 295332 8529018 ~ 8533404 (+)
AMCG00015365 naa40,LOC107750594,LOC107691908,LOC107749810 other upstream 395644 8342493 ~ 8433092 (+)
AMCG00015396 NA other downstream 58720 8951736 ~ 8953684 (+)
AMCG00015398 NA other downstream 78450 8971466 ~ 8978004 (+)
AMCG00015407 slc25a45 other downstream 136541 9029557 ~ 9036615 (+)
AMCG00015445 LOC102291110,LOC108440839,LOC107679294,LOC107731944,LOC102201806,LOC102799004,LOC108268318,LOC107558438,LOC570544 other downstream 731573 9624589 ~ 9631892 (+)
G98000 NA other downstream 813081 9706097 ~ 9710729 (+)

Expression


Co-expression Network