AMCG00015398


Basic Information

Item Value
gene id AMCG00015398
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8971466 ~ 8978004 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015398
ATGCTGCGCCGTGGGGTGGCGAGGCCAGTGCCCACCTGTGTGAGGGGCATTGTGATGCCAGGGGGCTGGGGCACTGCAAGGGAGACTGTCCTGGAGAGCCCCCCTGAGCCAGACACTGAGACAGGGACTGTGAGCAGAGATGGCATTGTGCTgccagggtgggggggggcagaagCAGTGCTAGGGCAGCCCCTGATCGTGGCAGCCGGGAGAGCCAGTAAGgatggagaaggaggaggaggggggaagcTGTGTGGACTTTGTCTCTCGAACCCGAGCCTGTACACCTGTCCGCGCTGCAATGTGGGCTACTGCGGCCTGGCCTGCTACCGCGGGGAGGCACACTCCGGCTGCTCAGAGGAATTTTATAAGGAGTGCGTTTACCAGCAGCTGAGGACACTGGgaagggagggggaggtggaggaggaggggaagaggaGGATGCAGGAGATCTTGCTCAGGCTGAGACAGGAGCAGGAAGGAGGAGACGAGGCAGAGGGGGATGCAGATGGAGACGCAGAGGGGGAGGTGGAGGCGGGGCTGGCCGAGAGGTTTTGCGGCCTGGACCTGGACGCTCTCTCTGAGGAGCAGCTGTGGGAGCTGCTGCCCCCCCAGGACAAGATGCGCTTTGAGGGGTTGTTGAGGGGTGGGGGCATCGGGGCATTGGTGCCACAGTGGCAGGCCtggtgggagggagggggagggttGGTGGAAGAGGTGGGAGGGGACAGGGGTGGGAATGTGGGGGAGGCCATaggtggaggggagggagagcgGAGTGAACAGGGTGAGGgaatgagagagggggagggggctgcgACTGAGTCCGGGAGATCTCCTGAGAGAGGAGGTGGAGAGGGACAGGGAAGGAGGCAGAGAAAGAAGACCAATAAAGAAAAGGATgaggagaaaaagaagagagGGAAAACTGTCTGCCAGATCCCCGCCATCTCACCTCGTATTCCACCGCTGCGctccctgacctctgacccctgccCCCTGGCGGCCAACAGCCTGGTCAGCGCACTTTTTGGCTACACCTTCGCCCTGCGGCTGTACAACGGTGACCTCTCCGACCTGGAAGTGCTACCCGAGTTCTGCCAGGCGGTGCTGAGCACCTCGGTGGGGCTGGCCGACGGGCGGGGGTTTGGCTCAGTGGAGGAGGCAGTGGGGGCAGTGCTGGGGGCAGTGTGGATGGGGCCGTATTTCGACCGCCAGGACCCCCAGGCACCCTTACGGGCTGTGCTGGATGTAGCGATGGTTCTGGAGGGCAGAGGGGGCAGGTACACACTGGCCGCTCTCTCCCAGCTCAGGTGGGCTTTTGGGCAGGTCAGGAAAGCTCTTcccaggggggagggggagggaaggagaaaagGGAAGATGGACAGATccagaggagagggagaagagagagcgggagggggagagagacaagAGGGAGAtgaagagggaggaggagagaggctAGCAGGACAGGGAGAGCGTGGGAAAGAGCAAGtcccagagggggagggggcattAGGCTGGCGTCAGTGCTTTCTAGCGGGCAAGAAGGTGGAGTTCCTTCAGGCATGGGCACAGGAGTACGCCCCACTGCTGTCAGGACTGGGGGGGGGCGTCAGGGGGGAGCACAGACGCCAGGCCAGAGGGCAGAGGGGGGCACAGCAGGCCAGGGAACAGCTGGAGAGCCACTGGGGAGGCAAGAGACCCCCCCCAAGGAGGGAGCTGATCCAGGAGATGGACTAA
>TU121779
aaaaaataaaaataaaagtcagtACTTTTAGTTTTAGTCAGTATTTACTTGAATGGGAATCATCAGCCAGTCAGGCTTTCAACAAATGTGATGACCCTGGGCAGCCAATGTGACGATCTCATTTGGCCAGTCAGCGACTCTGCTAACATGTACTAATGTCTCTGCCTGGCCGATCAGCGCTGCGATTCTGATCCTTACCGTCTCCTGATTGGCTGAGCTGATACCTGGAGGGCCGTCCTCCCCAGGTGGCACCTCCTCCCGCCCCATCACTGGGGTGGCCGCCGCCCGACCTCgcatgacctctgacctcagTTTCAGGAAGTCCTCAGTGGACAGGATATCTCGGGGGGAGTGGCTCTCCACATGCTCCTTAAACCTCTGGAGAGCCACTGGGGAGGCAAGAGACCCCCCCCAAGGAGGGAGCTGATCCAGGAGATGGACTAAGACACTGgggatgtttatatatattttttattattcagttttttggGGGAGTTTGGGctgtcaaaatcaaaacaactgATTATAAGTTAATGGTGTTACTTGATGCAGGCAGGGACCCCTTCAGAGACTGAGGTTGGGGGATGGGAAGGTTTTTTGTGAACACTGTCTCTGATGTGATTGGCAATTGGGGCCCAGTGGAGGGGATCCTGGGGgtcaaaatgaaacaataaaagaaTTTCAATGACAGCAGCTGATCTGATGGACTGGTTTCTCATTCTCTGTCTTTTGTCTGTGGTTTTCAGTGTTGTCTCTGTTTTACAAATGACACGCCCCTGCCGTCTCTGTAAGCACATCTCACTTCACATCTCAGGTCCAGTGTCAGCCCCGAAGCGTTGGACCAGCGTTGGCACAATGTTGGTCAGGGAGGATGAGCCAATGTTGGCCCTACGTTGATCAGGACAGGTAGACCAGAAAGTGCTTGGTGGGCCAGTATTGACTCCTTCCAAGGAGGGGAAGCGGTCTAGTCAATCGTTGGCCCCCCGTTGACACACCATAGGTCAATACAGGTAGGGCAGGATGCGGTAGGGTACGCGCTGGCAGTAGGTACCCCAGGCCAGGCCATACTTGCCCTGGCACTGGCGCTCGTCTCGTGCCTCCCGGTGCACCAACAGGGTGCAGAAATACACCACATAGAAATAGGGCAGGGGGTGGGATAGgcctgtggagagagggagggtgagtGGTTAGAGTTGGGTGTggatgtgtgtgagagactgtTGTGGGGGGGCGTGGGGGCTCACCACAGGGCAGTGACCAGGCCAGTGCCATCAGCAGGTCGCCCAGGTAGTTGGGATGCCTGACGAAGCCCCACCAGCCTGACACCAGCAGCCGCTTCCCTGTTGCTGTGGCGATGGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015398 True 1746 mRNA 0.64 1 8975342 8977087
TU121779 False 1361 lncRNA 0.53 2 8971466 8978004

Neighbor

gene id symbol gene type direction distance location
AMCG00015399 NA coding upstream 5816 8964460 ~ 8965650 (+)
AMCG00015395 NA coding upstream 41690 8926502 ~ 8929776 (+)
AMCG00015392 NA coding upstream 139752 8825512 ~ 8831714 (+)
AMCG00015389 LOC102775858 coding upstream 162265 8802427 ~ 8809201 (+)
AMCG00015391 arl2 coding upstream 171188 8798233 ~ 8800278 (+)
AMCG00015406 NA coding downstream 78769 9056773 ~ 9063476 (+)
AMCG00015413 NA coding downstream 150031 9128035 ~ 9138925 (+)
AMCG00015414 NA coding downstream 161200 9139204 ~ 9139449 (+)
AMCG00015416 NA coding downstream 177494 9155498 ~ 9175483 (+)
AMCG00015417 NA coding downstream 280178 9258182 ~ 9261673 (+)
G97640 NA non-coding upstream 7348 8912014 ~ 8964118 (+)
G97650 NA non-coding upstream 21386 8942424 ~ 8950080 (+)
G97620 NA non-coding upstream 180799 8789560 ~ 8790667 (+)
G97619 NA non-coding upstream 186190 8784212 ~ 8785276 (+)
G97618 NA non-coding upstream 187475 8783746 ~ 8783991 (+)
G97663 vps51 non-coding downstream 5498 8983502 ~ 8984908 (+)
G97676 NA non-coding downstream 46641 9024645 ~ 9030399 (+)
G97623 NA non-coding downstream 89939 9067943 ~ 9072295 (+)
G97737 NA non-coding downstream 241832 9219836 ~ 9220284 (+)
G97741 sf3b2 non-coding downstream 244632 9222636 ~ 9223257 (+)
AMCG00015396 NA other upstream 17782 8951736 ~ 8953684 (+)
AMCG00015397 NA other upstream 78450 8828736 ~ 8893016 (+)
AMCG00015390 NA other upstream 86569 8877292 ~ 8884897 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other upstream 283786 8686768 ~ 8687680 (+)
G97513 NA other upstream 426684 8543324 ~ 8544782 (+)
AMCG00015407 slc25a45 other downstream 51553 9029557 ~ 9036615 (+)
AMCG00015445 LOC102291110,LOC108440839,LOC107679294,LOC107731944,LOC102201806,LOC102799004,LOC108268318,LOC107558438,LOC570544 other downstream 646585 9624589 ~ 9631892 (+)
G98000 NA other downstream 728093 9706097 ~ 9710729 (+)
G98025 NA other downstream 779069 9757073 ~ 9760688 (+)
G98053 NA other downstream 837714 9815718 ~ 9872005 (+)

Expression


Co-expression Network