AMCG00015407 (slc25a45)


Basic Information

Item Value
gene id AMCG00015407
gene name slc25a45
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9029557 ~ 9036615 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015407
CCGGAAGCAGTTTCCTCACCCACTGTCGGTGAGGCTGGTGGTTTTAACAACGGTGCGGTGATCACGGAGGCTCACCGGTGGCGCATCCGGTGAATATAAGTCATAACCAAGCCCCCAACTTTGTGCACAAGACACCCACCCCCACGCCCAGCGGAGACAGTGTGTAGTCTATATTTAGGCACTGTAGTTCTTTTTGCCTGCTCGAATGGACACGGAGGGATCCTCCATCGGACAGGAATCTGCACAATAAAACCCAACAGCTTGCAATTCATGCAAACTCACGTCGCCATGTGCCAAGTCCTGCTTTCTTCTGCTGCGTAGACATGAATGGGTCACACGGACTGCCTCCCCTCATGGCGCAGTTATTCGGACTCTATTCCAGCCGACAATTGCTAAGCAAACAGTGCTGTCACAACGAGGGACTGGGCAGTACAGTTCAATAACTATGTTATGACAGGGGTGTGGCACCTGAGCATTCACGATATCCTTTTCGGACGAcgacagaaagaaaagaaaaatacaaatcagaataAAAGTATTTCTATGTCCTTATGTATTGGGTGATGTTTTACAGTGTTGCTTCTGTTTGGCTTTGCTACTGTATAGCGGCGCTTGGAGATACACTTTTTCGTTCAAACTTCAAAGGTTGCTTTAGCCACAGAACTTTAGTCGCAATAAATGAGCTCCGTGCCCCTCCTCGTTAGCACCACCGCAACGATAATCATTTCGCTGGCGGAGTTACTGTGCCAGGCTGAGCCGCGCAGGGCACTGGCACACGGTGCAGAATTAGCCCGTTGGTCCTGTGTGCACAAGACACTGTTCTGAGGGGCCATTAGCACCTGCCTTGTGAGAACATGCCTGCAGAGGAGTTTGTAGCTGGGTGGATCTCAGGGGCTGTGGGTCTCATTGTGGGGCACCCCATGGACACAGTGAAGGTGCGACTCCAGACCCAGTCAACCTACAGGGGCATCGTGGACTGTGTGATCAGGACCTACCAGTACGAGGGGATTTCTGGCTTTTTCAAGGGGATGGCTTTCCCTGTCCTCACCATCGCCATTAGCAACTCAGTGGCCTTTGGTACCTACAGCAACGCCCTGGACTACCTCATGCAATCACAGCGCAGCGACCGAGGCTCTGCCCCcTTCCTGCAGGAGCAGAATGAGGAGTTGCACCACAGCCTCCTGCAGGCCACCATGGGCATAGAGAGGATGGGGTCAGAGTTCAGGAGCAACCAACAGCAGCTGGAGGCAGAACTACAGAGGAGCAGAGAGGAGCTGGAGAGCCTGAGGGACAAGTTCAGGAGGTCATGGGGCGGGGCTTGGAGGGTAGAGAAAGAGAcagggcagggagggagggagggagaggaaggggtACAGATACTggggggagaggaagggagggagggGCTGCAAGACAGCTACTCCAGCTCCCAGCAGGCCAATCACCTCCTGGAGCAGAAACTACACTCTGTGGTCCAGAGTCTCGAGGGAGAGAAGGACTGCCTGAATCAGCGCATCTCAGAGCTCACTGAGCAGCTGCTCACCGCGCAGAAGACCATCTGCACCCTGGAGACCATTAATgTGCCCTCTCTGCTGCAGGAAGTCTTGGAGAAGCACTTCCAAATGGACGATGCCCCCGACCAATCACTGCTCCCTTTGGCCGTTGTCACACCCCCTCCCACCCAGTTCATGGACCAGGACCCACCGGAGAAGGAGGACCAAGCGCCGGGCCGGATGGGGCCAGTCCCGGAGGAGGGGGAGTCGGACTGGTCGGAGAAGGTgccagaggaagaggaggaggcaggGCGGGGGAGGGGCTCAGGCGGTCAGCGCAGGGTCACGGCCTTTCAGCCCtggaagcagcagcagaagagggggaggaaggaggtcaggtggggagggggaggcggGGAGGGCGAGACGACGGAGGAGAATGAGTCAGGGGCGGAGGAGGGGAGgcgccccccccacaccctgcAGGTGCCCCTCTTCCAGTTCAGCCTGCACACTGATGCCCCGGAGAGGGAGCGTGGGGGCGGGTCCGGGGAGGGGTACGGCCTGGCGCACAAGCTGACCTCTCCGATCCGGGCTCTCTCTGCCAGCCTGGAGGAGATCCACTCGGCCTCCAGCCACCAGAACCAGCTCTACAGCCTTGGCCTGACTCACGGGCCCCTGACCACCAGCGCCGCCCTACAGGAACTGCACCGTCCAGGAAGAGGGggtgtggaggaggaggaagaggaagaggacgaCGACTCGGACACAGATGAGTTCTTCCGCAGCTGGAAGAAGAGGAACAACAAGAGGGAGGGCCCGGGCAGCGCAGGGGGCAGGGGCTCCAGGGTGGAGGTAGGATCAGGCCTGGGCAGAGGCAGGGTGGGGGTGGACGGGGGTCCGGGCAGCTACCAGTCAGCCCAGCGGATGCTCGATTGCTTCATCCGGCAGCTGCAGCCccctgaggaagaggaggagcgggaggaggagaggagggctGGCAGGGCCGGGGGGCGGGAGGGTGTGGTGAATGGGGAGAAACGTTCCCTGTAA
>TU121801
TGTGTAGTCTATATTTAGGCACTGTAGTTCTTTTTGCCTGCTCGAATGGACACGGAGGGATCCTCCATCGGACAGGAATCTGCACAATAAAACCCAACAGCTTGCAATTCATGCAAACTCACGTCGCCATGTGCCAAGTCCTGCTTTCTTCTGCTGCGTAGACATGAATGGGTCACACGGACTGCCTCCCCTCATGGCGCAGTTATTCGGACTCTATTCCAGCCGACAATTGCTAAGCAAACAGTGCTGTCACAACGAGGGACTGGGCAGTACAGTTCAATAACTATGTTATGACAGGGGTGTGGCACCTGAGCATTCACGATATCCTTTTCGGACGAcgacagaaagaaaagaaaaatacaaatcagaataAAAGTATTTCTATGTCCTTATGTATTGGGTGATGTTTTACAGTGTTGCTTCTGTTTGGCTTTGCTACTGTATAGCGGCGCTTGGAGATACACTTTTTCGTTCAAACTTCAAAGGTTGCTTTAGCCACAGAACTTTAGTCGCAATAAATGAGCTCCGTGCCCCTCCTCGTTAGCACCACCGCAACGATAATCATTTCGCTGGCGGAGTTACTGTGCCAGGCTGAGCCGCGCAGGGCACTGGCACACGGTGCAGAATTAGCCCGTTGGTCCTGTGTGCACAAGACACTGTTCTGAGGGGCCATTAGCACCTGCCTTGTGAGAACATGCCTGCAGAGGAGTTTGTAGCTGGGTGGATCTCAGGGGCTGTGGGTCTCATTGTGGGGCACCCCATGGACACAGTGAAGGTGCGACTCCAGACCCAGTCAACCTACAGGGGCATCGTGGACTGTGTGATCAGGACCTACCAGTACGAGGGGATTTCTGGCTTTTTCAAGGGGATGGCTTTCCCTGTCCTCACCATCGCCATTAGCAACTCAGTGGCCTTTGGTACCTACAGCAACGCCCTGGACTACCTCATGCAATCACAGCGCAGCGACCGAGGCTCTGCCCCGTCAAGCCTGGCAGTGTACCTGGCAGGATGCCTAGCTGGGGCAGCACAGGTGAGATAGAGGCTTCAGTCTCGGCCTATAAAGTCCTGTCCCTACAGCACTGGTCCCAGTCTGAGCCCCTGTAGTCCAGTCCCCACAGCGCCAGCTCCAGTCTGGgcctatatacagtgagggaaaaaagt
>TU121804
TGTGTAGTCTATATTTAGGCACTGTAGTTCTTTTTGCCTGCTCGAATGGACACGGAGGGATCCTCCATCGGACAGGAATCTGCACAATAAAACCCAACAGCTTGCAATTCATGCAAACTCACGTCGCCATGTGCCAAGTCCTGCTTTCTTCTGCTGCGTAGACATGAATGGGTCACACGGACTGCCTCCCCTCATGGCGCAGTTATTCGGACTCTATTCCAGCCGACAATTGCTAAGCAAACAGTGCTGTCACAACGAGGGACTGGGCAGTACAGTTCAATAACTATGTTATGACAGGGGTGTGGCACCTGAGCATTCACGATATCCTTTTCGGACGAcgacagaaagaaaagaaaaatacaaatcagaataAAAGTATTTCTATGTCCTTATGTATTGGGTGATGTTTTACAGTGTTGCTTCTGTTTGGCTTTGCTACTGTATAGCGGCGCTTGGAGATACACTTTTTCGTTCAAACTTCAAAGGTTGCTTTAGCCACAGAACTTTAGTCGCAATAAATGAGCTCCGTGCCCCTCCTCGTTAGCACCACCGCAACGATAATCATTTCGCTGGCGGAGTTACTGTGCCAGGCTGAGCCGCGCAGGGCACTGGCACACGGTGCAGAATTAGCCCGTTGGTCCTGTGTGCACAAGACACTGTTCTGAGGGGCCATTAGCACCTGCCTTGTGAGAACATGCCTGCAGAGGAGTTTGTAGCTGGGTGGATCTCAGGGGCTGTGGGTCTCATTGTGGGGCACCCCATGGACACAGTGAAGGTGCGACTCCAGACCCAGTCAACCTACAGGGGCATCGTGGACTGTGTGATCAGGACCTACCAGTACGAGGGGGTGGGTGACTGagctgggtggggggtgggtgggcaGGAGAGGGGTCTAATAATTCATGAGAGAGCTGAGATAGTCACTCTATCCCTGTTGGTGCTGAGATTAATTCAGTTCAGATTAGTTAAATTCAGGTTTTATTGTctgaattaaaattgtatttgtatctcACCCAGTCCTTTTCTGGGATTGTTAATATAATCTAGGTTTAACCAAACTAGTACAGGATTGACTCACTAAACTAGGACAAGATTGTTGTCCCTGTCTTATGATTTCCTGGCAGATTTCTGGCTTTTTCAAGGGGATGGCTTTCCCTGTCCTCACCATCGCCATTAGCAACTCAGTGGCCTTTGGTACCTACAGCAACGCCCTGGACTACCTCATGCAATCACAGCGCAGCGACCGAGGCTCTGCCCCGTCAAGCCTGGCAGTGTACCTGGCAGGATGCCTAGCTGGGGCAGCACAGGTGAGATAGAGGCTTCAGTCTCGGCCTATAAAGTCCTGTCCCTACAGCACTGGTCCCAGTCTGAGCCCCTGTAGTCCAGTCCCCACAGCGCCAGCTCCAGTCTGGgcctatatacagtgagggaaaaaagt

Function

symbol description
slc25a45 Predicted to enable acyl carnitine transmembrane transporter activity. Predicted to be involved in acyl carnitine transport and amino acid transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: solute carrier family 25 member 45

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015407 True 2546 mRNA 0.59 9 9029557 9036615
TU121801 False 1161 TUCP 0.52 5 9029717 9032785
TU121804 False 1438 lncRNA 0.50 4 9029717 9032785

Neighbor

gene id symbol gene type direction distance location
AMCG00015399 NA coding upstream 63907 8964460 ~ 8965650 (+)
AMCG00015395 NA coding upstream 99781 8926502 ~ 8929776 (+)
AMCG00015392 NA coding upstream 197843 8825512 ~ 8831714 (+)
AMCG00015389 LOC102775858 coding upstream 220356 8802427 ~ 8809201 (+)
AMCG00015391 arl2 coding upstream 229279 8798233 ~ 8800278 (+)
AMCG00015406 NA coding downstream 20158 9056773 ~ 9063476 (+)
AMCG00015413 NA coding downstream 91420 9128035 ~ 9138925 (+)
AMCG00015414 NA coding downstream 102589 9139204 ~ 9139449 (+)
AMCG00015416 NA coding downstream 118883 9155498 ~ 9175483 (+)
AMCG00015417 NA coding downstream 221567 9258182 ~ 9261673 (+)
G97663 vps51 non-coding upstream 44649 8983502 ~ 8984908 (+)
G97640 NA non-coding upstream 65439 8912014 ~ 8964118 (+)
G97650 NA non-coding upstream 79477 8942424 ~ 8950080 (+)
G97620 NA non-coding upstream 238890 8789560 ~ 8790667 (+)
G97619 NA non-coding upstream 244281 8784212 ~ 8785276 (+)
G97623 NA non-coding downstream 31328 9067943 ~ 9072295 (+)
G97737 NA non-coding downstream 183221 9219836 ~ 9220284 (+)
G97741 sf3b2 non-coding downstream 186021 9222636 ~ 9223257 (+)
G97745 NA non-coding downstream 201218 9237833 ~ 9238342 (+)
G97730 NA non-coding downstream 284427 9321042 ~ 9321684 (+)
AMCG00015398 NA other upstream 51553 8971466 ~ 8978004 (+)
AMCG00015396 NA other upstream 75873 8951736 ~ 8953684 (+)
AMCG00015397 NA other upstream 136541 8828736 ~ 8893016 (+)
AMCG00015390 NA other upstream 144660 8877292 ~ 8884897 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other upstream 341877 8686768 ~ 8687680 (+)
AMCG00015445 LOC102291110,LOC108440839,LOC107679294,LOC107731944,LOC102201806,LOC102799004,LOC108268318,LOC107558438,LOC570544 other downstream 587974 9624589 ~ 9631892 (+)
G98000 NA other downstream 669482 9706097 ~ 9710729 (+)
G98025 NA other downstream 720458 9757073 ~ 9760688 (+)
G98053 NA other downstream 779103 9815718 ~ 9872005 (+)
AMCG00015456 NA other downstream 815057 9851672 ~ 9862136 (+)

Expression


Co-expression Network