XLOC_006135


Basic Information

Item Value
gene id XLOC_006135
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 34752174 ~ 34984913 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013636
CGCAAATTCTTCTTACCTGTGTTGCTGCATTTTGAAGACATGTCACTCATTTTCAACGGGggaaagtgtaacggtcaatatggcgaatgaagccccgccttcttgcgtgcaggagccaatcatcgatcgctataggaTTCTTCGGGTGGGGGGAGATTCTCCACGTctcagaccagacAAAGCCAGAGCATGCTGACCAAAAgctgtttcaaagatggccgccacgTGAAATGACTTCAGAACTTGCATAACTATCTCCAATTGGTTAACCCTCTTCATGCCCATCCTCAAACGTTCTGTTTTAATCAGAATTGCTTTCAGAAGCTCAGCAACACAGGTAGGATATTGTTAGGATATTCAAGTTCACCAAAAAGTAAACTAAAAAgaccaaacttttgcatttacgtTGCACTGTACTGTTACACTGTAATTTGTGGATGCTGAATTATTTGAACGCTTTCTGTGTTGAAATgaattgtttaatttctgaaggTCTATTGTTCTCAGTGTTTTGGTTAGTCTTTATATCCCATGAGCTTTTGTAGAGTTCCAGACTGCTCTATTTGTAGCATCGTATTTGTTTTTGAGGCTCTAACAGACAGCACGAGTTCTATCCCTGTCTTCCCCCTGCCTTTCCTACTCCCCACATCTTATAATCTTAACTGTGGGCTGCCAAAGATTTATAGTCTAGAAATAAATTACACACTCGACAATAACCCAGAGGTGAAAATAGAAGCTCTCCAGAGAAACGAAAGAACTCCC
>TCONS_00013410
CGCAAATTCTTCTTACCTGTGTTGCTGCATTTTGAAGACATGTCACTCATTTTCAACGGGggaaagtgtaacggtcaatatggcgaatgaagccccgccttcttgcgtgcaggagccaatcatcgatcgctataggaTTCTTCGGGTGGGGGGAGATTCTCCACGTctcagaccagacAAAGCCAGAGCATGCTGACCAAAAgctgtttcaaagatggccgccacgTGAAATGACTTCAGAACTTGCATAACTATCTCCAATTGGTTAACCCTCTTCATGCCCATCCTCAAACGTTCTGTTTTAATCAGAATTGCTTTCAGAAGCTCAGCAACACAGtagaggagctactctatgttcCAACCtcagattacatcaaacatcgaataaaaaaatgcacatttcaaagcacttcttgGGACCtttaataaatggatggattgctCCAAATGAACACAGTCTTACCTGGACAGCTGGGCATGTCACATGTCCGTGACTCTGTGGCAGTGCAGGCATAACCGCACGATCTGGTCCGCTTTTGGTTACCATTTCCACAGGATACACTGCATGGAGACCAAGCACTCCAGTCGCCTTCCCCGTCTATGTAGTCTACGAGAGGCAGGAAATCAGTCAGATCTCGCACATTCACTGGCACTTGAGTGTTATGACATGATTCCTTCGCAGGCCGTGTTGTTGTACTCCTGTCCCACTGTGGAGATCTGATTCAGACCGTATGTTTCAAATACCTGAGGCACTTAAACCAGGCCTGCTGCTCTATACCATTAGCATACCTCTCTAATTGACTGATACACTTGGGAGAGTGTGAGCGAATGAGCCAAGTCTGCATACTTATGCCAGCTTCCAACTGCTTTTTAAACAACATGCATGTACTACTGGTAAATTTCAGTGACGTGATCGAGGGGCAGCTAGAACAGACGTTTTGAGGTGGAGTATTGTAGAATTTCTAAAATGCCCTTTTCTGAAGTCCCCATAATTTTATGGCCTTTAATGCAGTTTTTATATCCTGGGCGTTTGTTATTAGTCTACCAGATGCAGAGATATCTGCTCATGTTGTATTAGCGTGAACCCAACATAAGCGAATACATTTTCTGTTTAGGCCATAACAcagctgctattattattattattattattattattattattattattattattgttgatttatataatcaataataataagataattcatatataaaatacaattatataaaacacttaatttattattatgattaatttatataaacaatagaactatgataatataaataattcataaattt
>TCONS_00013637
CGCAAATTCTTCTTACCTGTGTTGCTGCATTTTGAAGACATGTCACTCATTTTCAACGGGggaaagtgtaacggtcaatatggcgaatgaagccccgccttcttgcgtgcaggagccaatcatcgatcgctataggaTTCTTCGGGTGGGGGGAGATTCTCCACGTctcagaccagacAAAGCCAGAGCATGCTGACCAAAAgctgtttcaaagatggccgccacgTGAAATGACTTCAGAACTTGCATAACTATCTCCAATTGGTTAACCCTCTTCATGCCCATCCTCAAACGTTCTGTTTTAATCAGAATTGCTTTCAGAAGCTCAGCAACACAGATTTTCACACTTCCAGGAATGTGAGGCCGAGGTGTGTCAtgatttgcatttgtttgttcttCGTGGGTCGTCTAAGAGCCCACATCAAAAAAGTGCGACAAATGTTTTAGCTCTCATCCTGAACTTGCGTATTCAGCGGTTCAAAGGGCTTCAGCACATTATGTTTTCTCAAGAAAGATCTTTGTTTGGACTGCTTCCCCTTAATTAAGCACACTAATCTGCACTGACCAATGGGTGGAATGCAGggctaaataattattttacacttCACATCTAGGTTACATTTCAAAATCAC
>TCONS_00013639
CGCAAATTCTTCTTACCTGTGTTGCTGCATTTTGAAGACATGTCACTCATTTTCAACGGGggaaagtgtaacggtcaatatggcgaatgaagccccgccttcttgcgtgcaggagccaatcatcgatcgctataggaTTCTTCGGGTGGGGGGAGATTCTCCACGTctcagaccagacAAAGCCAGAGCATGCTGACCAAAAgctgtttcaaagatggccgccacgTGAAATGACTTCAGAACTTGCATAACTATCTCCAATTGGTTAACCCTCTTCATGCCCATCCTCAAACGTTCTGTTTTAATCAGAATTGCTTTCAGAAGCTCAGCAACACAGATTTTCACACTTCCAGGAATGTGAGGCCGAGTTGGAGTGGCACACAGTTGGTCTGGCAGTTTGAAAGGGTGGATGAGCAGATCATGGGGCCCCTTTACTGACGGTCAATGCTTAGACAGATGTTTTCTTGGAGCTGCACATTGCTGTATTGGTAGCAGCCGAGATGGAAGGCGCTTTGACATCTGTTCTCCAGACAGACTGGACCCTCTGACACTCAAAATGGAGGTAAACTGATGGAGAGAGGCCCGTCCTGTTGCCTGTGTTTATGCTGAAATCCGGGCCCATCCCTGATTGTTTTCCTACAAACGACAAGGAATTGTTTCACAAGTAGGGTGGTTTTAATCTTTATAGTCAGTAATTAAAGTTCTTTACCTACCTTAAAGAGGTG
>TCONS_00013638
CGCAAATTCTTCTTACCTGTGTTGCTGCATTTTGAAGACATGTCACTCATTTTCAACGGGggaaagtgtaacggtcaatatggcgaatgaagccccgccttcttgcgtgcaggagccaatcatcgatcgctataggaTTCTTCGGGTGGGGGGAGATTCTCCACGTctcagaccagacAAAGCCAGAGCATGCTGACCAAAAgctgtttcaaagatggccgccacgTGAAATGACTTCAGAACTTGCATAACTATCTCCAATTGGTTAACCCTCTTCATGCCCATCCTCAAACGTTCTGTTTTAATCAGAATTGCTTTCAGAAGCTCAGCAACACAGTTGGAGTGGCACACAGTTGGTCTGGCAGTTTGAAAGGGTGGATGAGCAGATCATGGGGCCCCTTTACTGACGGTCAATGCTTAGACAGATGTTTTCTTGGAGCTGCACATTGCTGTATTGGTAGCAGCCGAGATGGAAGGCGCTTTGACATCTGTTCTCCAGACAGACTGGACCCTCTGACACTCAAAATGGAGGTAAACTGATGGAGAGAGGCCCGTCCTGTTGCCTGTGTTTATGCTGAAATCCGGGCCCATCCCTGATTGTTTTCCTACAAACGACAAGGAATTGTTTCACAAGTAGGGTGGTTTTAATCTTTATAGTCAGTAATTAAAGTTCTTTACCTACCTTAAAGAGGTG
>TCONS_00013640
CGCAAATTCTTCTTACCTGTGTTGCTGCATTTTGAAGACATGTCACTCATTTTCAACGGGggaaagtgtaacggtcaatatggcgaatgaagccccgccttcttgcgtgcaggagccaatcatcgatcgctataggaTTCTTCGGGTGGGGGGAGATTCTCCACGTctcagaccagacAAAGCCAGAGCATGCTGACCAAAAgctgtttcaaagatggccgccacgTGAAATGACTTCAGAACTTGCATAACTATCTCCAATTGGTTAACCCTCTTCATGCCCATCCTCAAACGTTCTGTTTTAATCAGAATTGCTTTCAGAAGCTCAGCAACACAGATTTTGTTTCGCATTGTTTGGATTTCTTGGTGATGATgctaaaatgaaataaagtacCCTGGAAAGGTGAACACAACACACCTGCTGCAAAGAGCATCTCCTCCACCTAGTGGTCAATTTCAAAAGGAGACCTTTGGTGTGAAAGGCAATCCTATTACCACTGGCCCGTCGATAAGGAGGACTGGCTCGCTCACAAAGCGCAGGCTGGAGAAAGTGAGCCTCCATTGGTTTTGGTTTAAGCCAAGGCCAAACATTCCGGTGAGGTTTTCCAGCCGTCATTTCAGGGGGATTGGTTCTTTTGGGCTGAGAGGTGTTTGTGTTTAAGAGATGGAATTAGGTGTGAAATTTCACCACATTCACTCGCTGCTTCATCAGCAACACACACGGAAAGACCTGTGGATGAG
>TCONS_00012080
TTCGGGTGGGGGGAGATTCTCCACGTctcagaccagacAAAGCCAGAGCATGCTGACCAAAAgctgtttcaaagatggccgccacgTGAAATGACTTCAGAACTTGCATAACTATCTCCAATTGGTTAACCCTCTTCATGCCCATCCTCAAACGTTCTGTTTTAATCAGAATTGCTTTCAGAAGCTCAGCAACACAGTCTCCGAGTGGCTTGAGGAAGTTGCTGTCCTCTGTGTTGCTCTCGTAGGGGTAATCCTGTTCCTCAGGCCCCTTCGGAGTGGACACAGAAGATGAGGACGAGGATGATGAACGCTGCCACCAGTTCCTCCAGTTAGGAGCTGCCCAGCCAGGCTTGTTTTCTTTACGCATTCCCTTCTCTGGCTCAGAACCTTCCAGACTGTCCACCACTTCTATGGTGACCTAAACAATGGAAGAATATTGTCATTACAAGTGTTTACTGAGGCAAACGTTGCTATTAACAATTTTGTTCATCCATATGTTTAAGGATTTGAACAATCCCAAACCATAAGAATTCAATGTGGAATTTATtgcaaataatttgtaaaatgagGGAtgcc
>TCONS_00013641
GTTTGTTGTGAAGTTCTGCGCGTGCTCGTGAAGAGGCGACTCTGTGACGCAGATTTTGTTTCGCATTGTTTGGATTTCTTGGTGATGATgctaaaatgaaataaagtacCCTGGAAAGGTGAACACAACACACCTGCTGCAAAGAGCATCTCCTCCACCTAGTGGTCAATTTCAAAAGGAGACCTTTGGTGTGAAAGGCAATCCTATTACCACTGGCCCGTCGATAAGGAGGACTGGCTCGCTCACAAAGCGCAGGCTGGAGAAAGTGAGCCTCCATTGGTTTTGGTTTAAGCCAAGGCCAAACATTCCGGTGAGGTTTTCCAGCCGTCATTTCAGGGGGATTGGTTCTTTTGGGCTGAGAGGTGTTTGTGTTTAAGAGATGGAATTAGGTGTGAAATTTCACCACATTCACTCGCTGCTTCATCAGCAACACACACGGAAAGACCTGTGGATGAG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000092107

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013636 False 762 lncRNA 0.42 2 34752174 34753090
TCONS_00013410 False 1308 lncRNA 0.40 3 34752174 34772595
TCONS_00013637 False 632 lncRNA 0.44 3 34752174 34797693
TCONS_00013639 False 725 lncRNA 0.47 4 34752174 34798133
TCONS_00013638 False 694 lncRNA 0.47 3 34752174 34798133
TCONS_00013640 False 741 lncRNA 0.47 4 34752174 34984913
TCONS_00012080 False 576 lncRNA 0.45 3 34752314 34776339
TCONS_00013641 True 456 lncRNA 0.47 3 34862410 34984913

Neighbor

gene id symbol gene type direction distance location
XLOC_006134 tasp1 coding upstream 1875 34689663 ~ 34750299 (+)
XLOC_006132 macrod2 coding upstream 193253 33703784 ~ 34558921 (+)
XLOC_006133 CR524481.1 coding upstream 325809 34426248 ~ 34426365 (+)
XLOC_006131 CABZ01087953.1 coding upstream 1056878 33688474 ~ 33695296 (+)
XLOC_006129 BX005372.1 coding upstream 1062182 33651416 ~ 33689992 (+)
XLOC_006138 jag1b coding downstream 354269 35339182 ~ 35390095 (+)
XLOC_006139 mkks coding downstream 487890 35472803 ~ 35481843 (+)
XLOC_006140 CU681845.1 coding downstream 498705 35483618 ~ 35522176 (+)
XLOC_006141 wdr27 coding downstream 543694 35528607 ~ 35610118 (+)
XLOC_006142 thbs2a coding downstream 650759 35635672 ~ 35677353 (+)
XLOC_006116 NA non-coding upstream 1646946 33104911 ~ 33105228 (+)
XLOC_006113 BX470227.1 non-coding upstream 1767405 32984654 ~ 32984769 (+)
XLOC_006112 NA non-coding upstream 1835248 32906643 ~ 32916926 (+)
XLOC_006111 CR936241.1 non-coding upstream 1905565 32846493 ~ 32846609 (+)
XLOC_006149 NA non-coding downstream 1004242 35989155 ~ 35995167 (+)
XLOC_006160 NA non-coding downstream 2553740 37538653 ~ 37544321 (+)
XLOC_006162 BX005106.1 non-coding downstream 2689265 37674178 ~ 37674294 (+)
XLOC_006163 BX322660.1 non-coding downstream 3165604 38150517 ~ 38150637 (+)

Expression


Co-expression Network