AMCG00015433 (LOC107596124,LOC107734132,LOC558044)


Basic Information

Item Value
gene id AMCG00015433
gene name LOC107596124,LOC107734132,LOC558044
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9415883 ~ 9435428 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015433
ATGGGCACCAGCCCCCCGTCCTGCCTGTCCTCTCTGTCCTCCCTCCCTGACagacgtttatttatttttgttgggtGTGTTCATCacagcctgtgtgtgtctgtggttttTGAGCCGCTGATCAGgtcTGCAGCTAGGAATTACGGGGCCCGGGACAAGTGCTATGTGAAGGGCCCCTCTTCCAGaCTTTCCGcaaattttgtttttgcaaaaatcCTACACAACACGCACGTCTTGCCCCAACTTTCGGCACAGAATatcatagatttttttctcGGGCATCTCTGTGGCCCTGCCCCTGCTCTGCGCCCCAGAGGAGAAGTGACGGCCGGGTACACTGAGGAATCAAGTGCAAAAAGGGACCTTGGGAAGATTTTTATTCCAGCTCTGTTCTCGAAGAAGACTTTCACCAAGTGGGTGAACTCTCACCTGGCCAGGGTCACCTGCCGCATCGGTGACCTCTATGCCGACCTGCGTGATGGCCGCATGCTCATCCGCCTGCTGGAGGTCCTGTCTGGGGAGCAGCTGcCCAAGCCCACGAAGGGGCGCATGCGGATCCACTGCCTGGAGAACGTGGATAAGGCCCTGCAGTTCCTCAAGGAGCAGAAGGTCCACCTGGAGAACATGGGCTCCCACGACATCGTTGATGGCAACCACCGCCTCACTCTGGGCCTCATCTGGACCATCATCCTCCGCTTCCAGATTCAGGACATCAGCGTGGAGACGGAGGACAACAAGGAGAAGAAATCGGCCAAGGACGCTCTGCTGCTGTGGTGCCAGATGAAGACTGCGGGGTACCCCAACGTCAACGTTCACAACTTCACCACCAGCTGGAGGGACGGCCTGGCCTTCAATGCCATCGTCCACAAGCACAGGTCCGACCTGATCGAGTTTGACACACTGAAGAGGTCCAATGCCCACTACAACCTGCAGAACGCCTTCAATGTGGCTGAGAAGGAGCTGGGCCTCACCAAGCTGCTGGACCCCGAGGACGTCAACGTGGACCAGCCAGACGAGAAATCTATCATCACCTATGTGGCCACGTACTATCACTACTTCTCCAAGATGAAGGCCCTGGCAGTGGAGGGCAAGAGGATCgggaagGGAAACCTGGAGGTTCTGCTGTTCACCATCCAGAGCAAGATGAGAGCCAACAACCAGAAGGTCTACATGCCCAGAGAGGGGAAACTCATCTCAGACATCAACAAGGCATGGGAGCGGCTGGAGAAGGCGGAGCACGAGCGGGAGCTTGCCCTGCGCAACGAGCTGATTCGCCAGGAGAAGCTGGAGCAGCTGGCGGCCCGCTTCGACCGCAAGGCGGCCATGAGGGAGACCTGGCTGAGCGAGAACCAGCGGCTGGTGTCCCAGGACAATTTCGGGGTGGACCTGGGCGCGGTGGAGGCGGCCACCCGCAAGCACGAGGCAATCGAGACCGACATCAGCGCATACAGCGAGCGCGTGGCGGCGGTGGCGGCCGTGGCCCGGGAGCTGGAGGCCGAGAACTACCACGACGTGCGGCGGGTGGTGGCGCGCCGCGACAATGTGCTGCGCCTCTGGGAGTACCTGCGGGAGCTGCTTGCTGCCCGCCGAGAGAGGCTGTACCGCAACCTGGACCTGCAGAGGGTGCTGCAGGAGATGGTCTACATCATGGACTGGATGGGGGAGATGAAGggCCGGCTGCAATCCCCAGACTGTGGGAAGCACCTGCACGACGTGGAGGACCTGCTGCAGACGCACACGCTGGTGGAGTCCGATCTCTCCGCCCAGGCCGATAGGGTGCGGGCCGTGCAGGCCGGGGCCGAGAAATTCACTGCCGATGACGACAGCTACAAGCCCTGTGACCCGGCGCTAGTGCGAGAGCGGGTCTCCCTTCTGGGCAGCGCCTACCAGGAGCTGGGCCGGCTGGCGGGCGAGCGGCGGGCCCGTCTGGAGGAGTCCCGCCGGTTGTGGCAGTTCTTCTGGGAGCTGGGTGAGGAGGCGGCCTGGATCCGCGAGCAGGGACAGATCCTGGCCTCCGAGGACTGCGGGCGTGACCTGACCTCCGCCCTACGGCTGCTCAGCAAACACGAGGCCTTCCGCGACGAGATGGGCGCCCGTTACGGCCCGCTGGGTGCCACCATCGGCTCCGGGGAGGCCCTGGTGGCCGAGGGGCACTCGGGGGCAGCCGAGGTGGGCGAGCGCATTGTGGACATCCGGGCCCAGTGGGCGCAGCTGGAGGGGCTGGCCCAGGCCCGGGAGCAGCGGCTGCGGGAGGCGGTAGCGCTGTTCCAGTTCGAGGCGGACACCAACGACATGGAGGCCTGGATCATGGAGACGCTGCGGCGGGTGTCCAGCCAGGAGGTGGGCCACGATGAGTACTCCACCCAGACACTGGCCAAGAAGCAGAGGGAGGTGGAGGACGAGATCCACAGCCACCGGCCCCTCATCGACTCCCTCCACGAGCAGGCCCTGACCCTGCCGGCCGGTCGCGCCCGCTGTCCCCAGGTGGAGGGCCGTCTGCCCGCCATCGAGCAGCGCTACGAGGAGCTGGAGGCCCTGGCCGCTGCCCGCCGCCAGGCTCTGGAGGGGGCGCTGGCCCTGTACCGCATGTTCAGCGAGGCGGGTGCCTGCCAGCTGTGGGTGGGAGAGAAGGAGCAGTGGCTCCACGCCATGGAGATCCCCGACAAACTGGAGGACCTGGAGGTGGTGCAGCAGagGTTTGAGACCTTGGAGCCCGAGATGAACAACCTGGCCTCTCGCATCGCCGACGTCAACCAGGTGGCTGAGCAGTTGCTGGGTTCAGAACAGTGCAACCCGGAGCAGATCCTCAGCACCCAGGACCAGCTCAACTCCAGATGGCGGGAGTTCCAGCAGCTGGCAGAAGAGAAACAACGTGCCCTGGAGGCGGCCCTGAGCATCCAGAACTACCACCTCGAGTGCACCGAGATCCGGGCCTGGATGTGCGAGAAGACCAAGGTCATCGAGTCCACCCAGGGGCTGGGCAACGACCTGGCTGGGGTCATGGCCCTGCAGAGGAAGCTGACGGGCATGGAGCGCGACCTGGAGGCCATCCAGGGCAAGCTGGACGAGCTGAGATCCGAGGCCCACAGGCTGGCCGACGAGCACCCCGCCCCGCAGGCCGGGCAGGTGCAGGAGCGGCTGGGGCAGATCCAGGAGGTGTGGGAGGAGCTGACGGGCACCCTGCGGCGCCGGGAGGAGGGCCTAGGTGAGGCCAGCAAGCTGCAGGGCTTCCTGCGCGACCTGGACGACTTCCAGGCCTGGTTGTCCCGCACACAGACAGCCGTGGCCTCTGAGGACAGCCCCACTTCCCTGGCTGAGGCCGAGGCGCTGCTGGCCCAGCACGAGGGCATCAAGAACGAGGTGGACAACTACCGCGAGGACTACCAGAAGATGCGGGCGTTGGGCGCGGAGGTGACCCAGGGCCAGACGGACGCCCAGCACATGTTCCTGGGGCAGCGGCTGCAGGCGCTGGACACGGGCTGGCACGAGCTGCGCCGCATGTGGGAGAGCCGGCAACAGCTGCTGGCCCAGGCCTGCGACTTCCAGACCTTCCTGCGGGACGCCAAGCAGGCTGAGGGCTTCCTCAACAACCAGGAATATGTCCTGTCCCACACGGAGATGCCGTCCACTCTCCAAGCGGCGGAGGCGGCAATCAAGAAACACGAGGACGTGCTGACCACCATGGAGGCAAGCGAGGAAAAGATCATGGGTGTGGTGGACAGTGGCCGCCGCCTCATTGCTGAGGGCAACGCCAATGCCGACAAGATCCAAGAGAAGGCCGACTCCATCCGGGAgaggCACCAGAAGAACAAGCAAGCTGCCAGCGAGCTCCTGGCCAAGCTGAAGGACAACCGGGAGCTGCAGCACTTCCTGCAAGACGGACAGGAGCTGACCCTGTGGATCAACGAGAAGATGCTGACGGCACAGGACATGTCCTACGACGAGGCCAGGAACCTCCACAGCAAGGCCCTGGTGTCGGAGAAGCCCGAGCTGGAGCCGGTGGTGAGCCGCACACTGGCCGAGCTGCAGCAGCTGTGGGAGGAGCTGGAGAGCACCACCAAGGCCAAGGCACAGTGCCTCTTCGACGCCAACAGGGCGGAGCTGTTCACCCAGAGCTGTGCCGCCCTGGACTCGTGGCTCGGGAACCTGTCCGTGCAGCTGCAGAGCGACGACTACGGCAAGGACCTGACCAGCGTCAACATCCTGCTCAAGAAGCACCAGATGCTGGAGAACCAGATGTCCGTACGGGAGAAGGAGGTCCAGGCGTTGCAGAGCCAGGCCCAGGCGCTGGCCCAGGAGGACTGCGGGCTGACCGAGGTGGACGGGCGGCAGCAGGGCGTCCAGGAGaacttctcccagctcctggGGCCCCTGCGTGAGCGCCGGCTGCAGCTGCTCGCATCCAAGGAGGCACACCAGTTCAACCGCGACCTCGAGGACGAGATTCTTTGGGTGAATGAACGCATGCCCCTGGCCACTTCCACAGACCATGGCAAAGACCTGCCCACAGTGCAGCTCCTCATGAAGAAGAACCAGaCCCTGCAGAAGGAGATCCAGGGTCACCAGCCGCGCATCGATGACATCCAGAGCCACGGGCGTGCGGTTGGGGGCAGCGGCGAGGGGCAGCAGGGGCTGGAGGGGCGGCTGGCTGAGCTGGCAGACTCGTGGGCACTGCTGATCAGCGAGGCAGAGAGCCGGCACGGGCGGCTGGCTGAGGCTCACCGTGCCCAGCAGTTCTACACTGACGCGGCCGAGGCCGAGGCCTGGATGGGGGAGCAGGAGCTACACATGATGTCCGAGGAGAAGGCCAAGGATGAGCAGAGTGCCGTTGCCATGGTGAAGAAGCACCAGGTGTTGGAGCAGGCACTGGAGGACTACGCCCAGACCATCCACCAGCTGGCCAACAGCAGCCGGCAGATGGTCACCAGCGAGCACCCAGAGAGCGAGAGGATCAATCTACGGCAAGCCCAGGTGGACAAGCTGTACGCAGGGCTGAAGGACCTGGCGGAGGAGCGGCGGGGCAAGCTGCAGGAGCGCCTGCGTCTGTGCCAGCTGAAGAAGGAGGTGGACGACCTGGAGCAGTGGATCTCGGAGAGGGAGGTGGTGGCCGGGTCTCACGAGCTGGGCCAGGACTACGAGCACGTCACGATGCTGCGAGACAAGTTCCGGGAGTTCGCGCGGGACACCAGTGCCATTGGTCAGGAGCGGGTGGACGGGGTGAACGCGCTGGCGGACGAGCTGATAGAGACGGGCCACCCGGAAAATGCCACAGTGGCGGAGTGGAAGGATGGCCTGAACGAGGCCTGGGCTGACCTGCTGGAGCTCATCGACACACGCACGCAGATGCTCTCGGCCTCCTACGAGCTGCACCGCTTCTACCAGGACGCACGCGAGGCGCTGGGCCGGGTGCGGGAGAAGAGCGCCGCGCTGCCCGCCGACCTGGGGCGAGACCTCAACACCGTGCAGCACCTGCACCGGCAGCACACCACCTATGAGCACGACATCCAGGCACTCAGCGGACAGGTGCGGCAGGTGCAGGACGACGCGGCGCGACTGCAGAAGGCCTACGCGGGAGAGAAGGCCGAGGACATCCAGCGGCACGAGCGCGCGGTGGCCGAGGCCTGGGCCGCCCTGCTGGCCGACAGTGAGGCGCGCAGGCAGGTGCTGCTGGACACGGTGGACAAGTTCCGCTTCTTCAACATGGTGCGCGACCTCATGCTGTGGATGGATGGGGTCAACCTGCAGATCGACGCCCACGACAACCCCAGgGATGTGTCCTCTGCCGGCCTGGTCATCGCCCACCACCAGGACATCAAGAGTGAGATTGAGGCTCGGGCAGACAGCTTCACGGCCTGCAGCGACACGGGCACAGCGCTCATCCAGAAAAACCACTATGCCTCCGATGAGGACAAACGCACAGAGATCAACAGCAAGTGGCAGGAGAAGATGGACTGGCTACAGATTGTGCTGGAGGTACTGCAGTTTGGGCGTGACGCCTCGGTGGCGGAATCGTGGCTAGCGGGGCAGGAGCCCATCGTGCGGGCGGCAGAGCTGGGGGCCAACGTGGACGAGGTGGAGAGCCTGATCAAGCGGCACGAGGCCTTCGAGAAGCTGGCGCTCAGCTGGGAGGAGCGCTTCACTCAGCTGGAGAAACTCACCACGCTGGAGGAtcgggagaggaagaggagggaggaggaggaagagaggttGAGGCGACCGCCCACGCCTCCGCCCGCCGAGCCCGAGGTGGTGCAGCCCGAGCTCGAGGACAAGAGCCAGGCAGCACAAGAGTCTGCCGCCGGAACCAGTTTGGACCAGACCACGCTGAACCAGTCAGTGTCTGTGAACGGAGTACACAGTGACCAAGACACCTCCCAGggCTCGGAGTCGGAGTCTGCAAACGGGCCAGGGCGTGACCGGGACAGCGGCCTGGCTTCCTTCTCGCGCCTGGAGCCCACAGCCTTCGCCACCCTGCCGGGCAAGTCCTCAGAGGCGGCCACCACTGACTTCATAGAGGGCATGCTCTGCCGCAAGCAGGAGATGGAGTCGCACACCAAGAAGGCGGCCAGCAGGTCCTGGCAGAATGTGTACTGTGTCCTGCGCAAGGGCAGCCTGGGCTTCTACAAGGACAACAAGGGTGCGGCCAATGGCATCCCCTACCACGGGGAGGTGCCCATCAGCCTGGCAGAGGCCGTGTGCGAGGTGGCGCTCGATTACAAGAAGAGGAAACACGTCTTCAAGCTGCGACTCGGCGATGGGAAGGAATACCTCTTCCAAGCAAAAGATGACGCCGAGATGAACTCCTGGATCCGCTCGATCGGCACCGCCGCCCCANNNNNNNNNNGCGGGGCCACGGGCAGCGACCGGTCCCCCGGGGCCCCCAAGGGCCTGAGCCGCGCCATGACCATGCCGCCCATCTCCCCCAACAGCGGCGAGGGCGCCGGGGGGGTGACCATGCGCAACAAGGAGGGGAAGGAGCGCGACCGCGAGAAGCGCTTCAGTTTCTTCAGCAAGAAGAAGTGAGGGCGGCGGGGCAGCACTGCGGGGGGGAGACATCCGAGAACACGGCCGTGGGGGGGTGGGACGAGAGGACCAAGAGCCCCACCCTCCCATCTGTGCAAATTCAATACTGAAGGACCCTGAGGTTTcagtttgtctatttttatttcttcatggTTGTACTACTGttgatgttatattttatttttattttcctcgcCGTTGcgtgtaattatttttttttttttttctaagatgACGTTTTAATAGAATATTTAAGTGTTGCGTGAGGAGACGCGTTAGAacagaattattattgttacgattataataaagattattattattatttttaggggagagagagcagctgtGGGTCCGAGGATCACATCAGTACTTTGacagatttttctgttttgttcgtttgttatgtggttttatttcatgatttcagttttttttcttttaataggaACAGCGATTTTTCGAAAGTGTGTTGACGTGCATTTTAGCTTGTAGGGCTGGGGGGGAACTAACTTTgacaacaaaaaatactaaaaacaactgaagagaaaaaaagttttctttgggttttattgtaattcagtctaattttttatttttgtattatttggttgttttcttCCTAACCGGCGAGAGCGAGTGTCACGGTGTGAGCCACCCCCTTCCCGAGTGCTGACTGCGCTTGAATCTCTTCTGTTTCCTCCTTCGCCGCGGGGGGCTTGGTTTTCCAGACCCCCACTGTCGGCTGCTCGTGGCTCTTGCTGCgcggggggtgtgggggtgtggtTTGAGGTTGTGTTTTGAGCTgcggttttatttcatttgactCGTTTGCTGGTCTCTTAGTTGggtgcaattttttttttttgctttgttttttatttccattattatgatgatgatgatgaatattatGATGAATAATATCTTTCCTGTCCACCAGTGTTCATGCTGTCAAacactaaaagaaaaaataacataaaaaatagaaaaacgaATAACATGAAAGGGTAATAGAAGCAGAGGGCGGGTTGGGGGGCCGCAGGGGCGGATCGGGTGTAGGCTTATCTTCCCAGAGCTGCCGTCACTGCCTTTGCGAGTCCCGTGTTTCCCTCCGGGGCAGATTTGGAGGTCGCGCCCCCAGCACTGCAGCTGCTCCCAGCCCTGTACAACAGAGCCTCATACCAGGCGCAGAacacaatgctttaaaatcaaGTGAAATGTCTGCATCTGATTCTGCTTCCTGCCCAGCCTGCACTTACGCTGCCCTGTTGctcttcctctttttttttaacggCGGTGCAAACCCCGAAGAGCAGGTGTGTGATTCACCCCACAGGGTACAGCCTCGATCCGCGCCTCTCTATCCTGGTCTAACAGCGGGCTGCCAGGATTCAGTGCAGAATTCTTGGGGAGTCTGATGTGCCACCTTGAGGTGGGTGGCGGTCACCTGGCCTTCTCTTTCTGTGGGGCAGTTCAGCCACGCCGCCGTCACCTCCACTCCTCCGTGGTGTGGGACGAAATTGCTCGAGCGACTGCTG

Function

NR:

description
PREDICTED: spectrin beta chain, non-erythrocytic 1-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015433 True 8564 mRNA 0.61 36 9415883 9435428

Neighbor

gene id symbol gene type direction distance location
AMCG00015434 NA coding upstream 14503 9399430 ~ 9401380 (+)
AMCG00015427 NA coding upstream 28858 9383674 ~ 9387025 (+)
AMCG00015428 NA coding upstream 36823 9356963 ~ 9379060 (+)
AMCG00015425 men1,LOC103391704 coding upstream 60166 9348585 ~ 9355717 (+)
AMCG00015426 LOC104961656,LOC102799013,LOC103359705,LOC106918378 coding upstream 89269 9323555 ~ 9326614 (+)
AMCG00015432 NA coding downstream 5000 9440428 ~ 9442795 (+)
AMCG00015437 NA coding downstream 28896 9464324 ~ 9465756 (+)
AMCG00015436 NA coding downstream 37744 9473172 ~ 9498979 (+)
AMCG00015435 NA coding downstream 137440 9572868 ~ 9585537 (+)
AMCG00015444 NA coding downstream 186304 9621732 ~ 9624582 (+)
G97777 NA non-coding upstream 68639 9345762 ~ 9347244 (+)
G97770 NA non-coding upstream 84857 9327636 ~ 9331026 (+)
G97730 NA non-coding upstream 94199 9321042 ~ 9321684 (+)
G97745 NA non-coding upstream 177541 9237833 ~ 9238342 (+)
G97741 sf3b2 non-coding upstream 192626 9222636 ~ 9223257 (+)
G97989 NA non-coding downstream 220040 9655468 ~ 9657866 (+)
G97998 NA non-coding downstream 267408 9702836 ~ 9703109 (+)
G97999 NA non-coding downstream 270296 9705724 ~ 9706036 (+)
G98060 NA non-coding downstream 443031 9878459 ~ 9879136 (+)
G98195 NA non-coding downstream 761199 10196627 ~ 10197404 (+)
AMCG00015412 NA other upstream 291612 8797071 ~ 9124271 (+)
AMCG00015407 slc25a45 other upstream 379268 9029557 ~ 9036615 (+)
AMCG00015398 NA other upstream 437879 8971466 ~ 8978004 (+)
AMCG00015396 NA other upstream 462199 8951736 ~ 8953684 (+)
AMCG00015397 NA other upstream 522867 8828736 ~ 8893016 (+)
AMCG00015445 LOC102291110,LOC108440839,LOC107679294,LOC107731944,LOC102201806,LOC102799004,LOC108268318,LOC107558438,LOC570544 other downstream 189161 9624589 ~ 9631892 (+)
G98000 NA other downstream 270669 9706097 ~ 9710729 (+)
G98025 NA other downstream 321645 9757073 ~ 9760688 (+)
G98053 NA other downstream 380290 9815718 ~ 9872005 (+)
AMCG00015456 NA other downstream 416244 9851672 ~ 9862136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030283 sptbn2 coding NC_007116.7 CM002889.2 37649206 ~ 37709139 (+)
grasscarp (Ctenopharyngodon idella) CI01000039_07819978_07868788 NA coding CI01000039 null 7819978 ~ 7868788 (+)