AMCG00015435


Basic Information

Item Value
gene id AMCG00015435
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9572868 ~ 9585537 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015435
CCTCAAATCCCtaccctctctctccttgctCTCATTCCCTCTCTGGCTCTCGGGCTATACTGTACACCAgctcagacagacacagaggcaCCCCCGGGAGAGAGACTCTGACTCCTGCCACCGTCACCACATGACTGTTGGTGTTTAGGACTTTTTTTACCCCTGCATCCCGGCGGAGAGATGGGAGGCGAGAGCGAAGGGAAGAAGAAACGGGCCTTCTCTGAGAAGCGGCGAGAGAAGTCCCGGAACGCGGCACGGAGCCGGCGGGGCCAGGAGAGCCAGATGTTCGGCGAACTGGCGCAGCAGTTGCCCCTTCCCCCAGGCACAGCCACCCACCTGGACAAAGCATCCGTGGTGAGACTGACCCTCAGCTACCTGCAGCTCCGAGCCCTGCTGGACGAAGCCGAGACCCCGGGCTGGGCATCCACCAGTGCAGAGATCGAGACCCAGGCCTCCGCAGAGGGCGCTGGGCCGGGTCCAGGTGCTGATGGGACATCCTGTGTGGAGAGGGTGCTGGGCACGGCCCTGGAGGgcttcctgctgctgctgtccccGAGTGGTCAGGTTGTCTACATCTCAGAGGGTGTGAGCCAGCACACAGGCATCCCCCAGATGGAGCTCATTGGCCAGAGTGTGTTTGAGTTCATCCACCCCTGTGACCAGGAGGAAATTAAAGATATTCTGAACTTCAGACAAGAGACCAGGGGTAAAGCAGAAAAGCAGGACTGCGATTTCTTCACCCGGGTGAAATGCACACTGACCTCTCAGGGGCGGACGGTCCACCTCAAGTCAGCCTCGTGGAAAgtgCTGCACTGTACCGGAGTGGCGAAGGTACCCCAGGTCACCATCAATAACCTCCCTGGCTACCTGATCTTATTGTGCCAGCCGGTGCCCCTGCCCAGTGCCAGCGATGCAAGTGTGAACCGCCACGCCTTCCTGAGTAGACACAGCCCAGACATGAAGTTCACCTACTGCCAGCCCAGTGTCACGGAGCTGACAGGCTACTCGGAGGGAGAGCTGCTGGGCCGCTCGGTGTTCCAGTATTGCCACGCGCAAGACTGCCGGCGCATCCTCAAGGCACACCATAACTTGTTCTCCAAAGGTCAGATGTCCACGGGCCGCTACAGGCTGCTGGCACGGAGGGGGGGCTACGTGTGGGCGGAGACCGACGCTACGGTGGTCTGCGACGAGCGAACAGGACAGCCCCACAGTGTCCTCTGCGTCAACTACATCCTCAGtGAGCCGGAGGAATCGGAGGTGACCTTCTCCCTGGAGCAGACAGAGAGCCTGTTCAGACCCTGCCCAGCCCACGACACTGATGCCTTGGCGCCTGCTCCTGTCCCCACCCCCCTGCTCGGCCCGACCCAGGTCCCGGAAAGCAGAGCACAAGTGCGATGTGGCCAGGGTAGAGGGTATATGGGCTCTACTGGGTTCGCTGGGGAGAGCTGCTTTCCTGCAGAATACACAgagacAGATCCCAGAGATGGGGGGGCCAAGGCAGCCATTGTCTCTCTGATGGAGAGACTTCTGGAGTGGGACAGCGAGGGAGGGCTCCAGAAAAAAAACCAGGAGAACCACAATGAGCTGGACCTGGACTCGCTGGCCCCCTACATCCCTATGGACGGAGAGGACTTCAAGCTCAGCCCCATCCCTGAGGTAGCGGGGGACCGGGGGGCCCTGGGACCTGGCGACGGAGCAGAACTGGGCCCTAGTCCTCTCCCCAAGTCCTCGTGGGAGTTGCCAGACAGCAGCTACAGGGGCCTAGCTGTGCCTGGTGAGGAGACCCCCTTTGCACCCCCTCCTGTTCCCAGAGCTCAGCAGAGAGGGTCACTGCAGATGTCTGACATCAAAGACCCCTCCCACCTCGACCCCCGCCAGCCCCAGCCACATCTCATGGCCGCACAGCCCAGTGAACGGGCAGAGTGCTGTTGCCTTGGGAAGCGTTGCACAGCAGAGGTTGCCCAGGAGATGCGTGGGTGGCAGAGCAGGCACCAGAAGAGACACTGGAGGGAAGAGCAGCCCGGGCCCCTCTGGAGCTGTAATACACAGGTACTGCAGACCCTGAGTCAGAACTGTGTGGCCATAGAGCAGGAGACTTGGGTTTTAGATGGCAGTGCCCCCCTGTGGAAGAGAATGAAGGTGCCTGGGGAAGTGAACCTGCAGAGTTACATCACGCAGGGCCGGAGACGAGACCCCTGGAGTTTAGACTGGTCAGCGGGGAGTGTGTGTCCAGCGTTGCCTGTGTTGACGCGGTGGGAGTGCGAGGTCAATGCCCCGCTGAGCACAGCCTCCAGTCTGCTGCATGGCGCCGAGATCCTCCGCGTACTGGACCAGGCCACCTCCCACCTCGGCCCGGAGCGGCTGGGCACTGAGTGAGGACCTGGCGCTGCGCTGACAATGTTTAGAATTTGGATTGGATTTGCCTGAGGAAAATAAACTGGGCTTTTTGTTCagctttaatatttgttttttccccttttctgtACATTAATCTGACCAGGTTTTGGTAGCGTTTTATGTATCtattgtttatacatttgtattttttatgtatttgtgtaacaAGATGTGACTTTTG

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0016477 cell migration biological_process
GO:0002376 immune system process biological_process
GO:0048870 cell motility biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0045321 leukocyte activation biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko04062 Chemokine signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015435 True 2578 mRNA 0.59 15 9572868 9585537

Neighbor

gene id symbol gene type direction distance location
AMCG00015436 NA coding upstream 73889 9473172 ~ 9498979 (+)
AMCG00015437 NA coding upstream 107112 9464324 ~ 9465756 (+)
AMCG00015432 NA coding upstream 130073 9440428 ~ 9442795 (+)
AMCG00015433 LOC107596124,LOC107734132,LOC558044 coding upstream 137440 9415883 ~ 9435428 (+)
AMCG00015434 NA coding upstream 171488 9399430 ~ 9401380 (+)
AMCG00015444 NA coding downstream 36195 9621732 ~ 9624582 (+)
AMCG00015443 LOC108440852,LOC107597921,LOC107683583,LOC107558412,LOC107710341,LOC557645,LOC107679244 coding downstream 57585 9643122 ~ 9644228 (+)
AMCG00015450 LOC100695529,LOC102800049,LOC102202559,LOC101072470 coding downstream 111763 9697300 ~ 9702772 (+)
AMCG00015461 NA coding downstream 187037 9772574 ~ 9810428 (+)
AMCG00015455 NA coding downstream 230594 9816131 ~ 9819910 (+)
G97777 NA non-coding upstream 225624 9345762 ~ 9347244 (+)
G97770 NA non-coding upstream 241842 9327636 ~ 9331026 (+)
G97730 NA non-coding upstream 251184 9321042 ~ 9321684 (+)
G97745 NA non-coding upstream 334526 9237833 ~ 9238342 (+)
G97741 sf3b2 non-coding upstream 349611 9222636 ~ 9223257 (+)
G97989 NA non-coding downstream 69931 9655468 ~ 9657866 (+)
G97998 NA non-coding downstream 117299 9702836 ~ 9703109 (+)
G97999 NA non-coding downstream 120187 9705724 ~ 9706036 (+)
G98060 NA non-coding downstream 292922 9878459 ~ 9879136 (+)
G98195 NA non-coding downstream 611090 10196627 ~ 10197404 (+)
AMCG00015412 NA other upstream 448597 8797071 ~ 9124271 (+)
AMCG00015407 slc25a45 other upstream 536253 9029557 ~ 9036615 (+)
AMCG00015398 NA other upstream 594864 8971466 ~ 8978004 (+)
AMCG00015396 NA other upstream 619184 8951736 ~ 8953684 (+)
AMCG00015397 NA other upstream 679852 8828736 ~ 8893016 (+)
AMCG00015445 LOC102291110,LOC108440839,LOC107679294,LOC107731944,LOC102201806,LOC102799004,LOC108268318,LOC107558438,LOC570544 other downstream 39052 9624589 ~ 9631892 (+)
G98000 NA other downstream 120560 9706097 ~ 9710729 (+)
G98025 NA other downstream 171536 9757073 ~ 9760688 (+)
G98053 NA other downstream 230181 9815718 ~ 9872005 (+)
AMCG00015456 NA other downstream 266135 9851672 ~ 9862136 (+)

Expression


Co-expression Network