AMCG00015436


Basic Information

Item Value
gene id AMCG00015436
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9473172 ~ 9498979 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015436
ATGGGGGGACAGGGAAGGAAGTGGCCGGGGGCGGTGGGGGAttccacacacagcagctccaGGCCCGTCTGCTGCCCCGCGCCAGGGCCAGAGCACCACCGCTACCAACGCTGCTGCCCCCAGGCTCTGCtgGTGTGCCCCCTCACCTGCATGAATGGGGGCCAGTGCAGCTCCCGCAGTCACTGCCTGTGCCCTCCTGGCTTCACTGGGCGGCTCTGCCAGTTCTCTCTGCGGCAGGGTGGGCAGGGCGGGCAGGGGGCGGTGAGCGCTGGGGGTGGGGAGCAGGGCCCCGTGGGCAAACAGACCCTCTACACCCTGCAGACCAAGCCACCCCACAAGCCCCCGACACGCCTCCCGCCACAGACGCACAAGCCCAGGGGGCGGTGCTTCCAGGAGACCACTCCCAAACAAGCCTGCAGCAGTAACCCGCTGCCTGGCCTCACCAACCAGGAAGATTGCTGTGGCAGCATACAGGAGCCCAAAAGACAGGCAGACTCTCCCGGAGAGACCGGCCCCTGCTACAGGATGGTGACGGAGCAGGATCAGTGTGAGCACGCCCTGCCCACCCAGCTCTCACAGGAGATGTGCTGCTGCACGGTGGGAAAAGCGTGGGGCCAGGGCTGTGAGAGGTGCCCGCAGGTCGGGACAGCGTCCTTCTCTAAGATCTGTCCTGCGGGCAAGGGGTACATCTTCCAGAGTTTCCGCCAGACCCTGTCCTTCCCGCAACACGTCTTCCCGGACGAAAAGAAAGgtgCCCAGACGGGAGGAGCCGGAAGTGACCACGCCAGCCCAGCCGCCCACCACCACCGCCCCCAGTCCTCGGTACCCAGACCCACCCCCCCCACGATCGAAAAAGTTCCGCCAGAGACGGACATCAACAGTCCCATGGAGATGTCGACGCAGATGGCGCAAACGGACGCGTGCCGACAGAACCGGAACATCTGTGGCCATGGCGAGTGTTCCAACACCTTCAACGGATTCATCTGCCACTGCTACACCGGTTACCGGTTCAATCCCCAGAAGAAGTACTGCATGGACGAGAACGAGTGTGAGAAGGAGCCCTGTGGACCAGGGAGGGGCCTGTGCATCAACACCGTCGGTTCCTATACCTGCCGCTGCAACCATGGCTACAAGCTGGGCAGCCACAACAGGATGCGCACCTGTGTAGACGTGAACGAGTGTGCCAAGGACAACAGCTGCGGCGAGAGCGGGCGCTGCGTCAACCTGCCGGGCGGGTACAGGTGCGACTGCTACGAGGGGTTCAAGAGCAAGTCGCCCCGCCACCCTGCCTGcgaggATATCGACGAGTGCCTGGACCGCAACACCTGCCCCAATGCGCAGTGCGAGAACACCCCCGGCTCCTACGAGTACATCGATGAGTGCCTGGACGAGCGGCTGTGTGCCAACGGGAAGTGCAACAACACCCTGGGCTCCTTCAAGTGCCTGTGCCACCCAGGCTTCCAGCTGACTCATGAGGGCAGCCACTGTGAAGACACGAACGAGTGCGACTACGCCATCAACTGCCAGGGGGGGGACTGCATCAACACTCACGGCTCCTTCCAATGTGAGTGCGGCAAGGGCTTCAAGCTGGAGAACAACATCTGCAAGGACATCAACGAGTGCGCCCTGGACAGGAGGCTCTGCCAGCCCCATGGCTTCTGCGAGAACAGGAAGGGCTCCTATGTCTGCGTGTGCCACAAGGGGTACCGGCCCTCCGAGGACCACCACAGCTGTGAGGAAATCGAAGTGGACCATGATGACAAGAGGGAGTGCTATCTGGACATGGATGACACGGTGTTCTGCGACAGCGTCCTGGCCACTAACATCACCAAACAAGAGTGCTGCTGCTCCATCGGCGTGGGCTGGGGGGACCACTGCGAGATCTACCCTTGCCCCGTCCACAACTCCGCGGAGTTCCACTCGCTCTGTCCCACTGGGAAGGGCTTCTACCACGAGGAGAGAGTGACCACTTACGGGCTGCCCATGCACAGAGATATCGATGAGTGCGTTCTGTTTGCCAACGAGATCTGCAAGGAGGGCCGCTGCATGAACACCCAGCCTGGGTACGAGTGCTACTGCCAGCAGGGCTTCTACTATGACGGCAACCTACTGGAGTGCATCGATGTCGACGAGTGCCacgacaactctctgtgtgccAACGGGCGCTGCGTCAACACCAGGGGCGCCTACTACTGCAACTGTAACCCCCCCTGGATCTCCGACGTGTCCGGCAAGAAGTGTGTGATGCCCGATGTGGACGAGTGCCAGGATCCGGCCAACTGCAAGAATGGGCGCTGTGTGAACACCCAAGGTTCCTACTACTGCATCTGCACCCTGCCCTGGACCCTGGCTACCGACCGCAACAGCTGCATCCCCCCCGAGGAGCAGGGTGATGTGAATGAGTGTCAGGACCCCTCCTATTGTAAGAATGGAGTGTGTATCAACACGCCCGGCTCCTATCACTGTCTCTGCAGCCAGCCCTTCACCTTCAGTGCGGCGCTCAAACAGTGCGTGTACGACGACCGCACCGCTGCCCACAAGGATGTGTGTTTCCAGCGCGTGGATGAGGGCCTGATCTGCAGCGGGCCCCGGTCGCAGCTCGTCACCTATTCCACATGCTGCTGCCACTTCGGCAACGGCTGGGGCCCCGAGTGCCGCACCTGCCCAGAGCGCAACTCAGATGTCTTCAATCGCCTGTGTGAGATGCATGTTGATACAGAGTCCGATGGGGAATCGGAGTTCTTGCCGGTGTATGTCGATCATAACCCAAGTGAGTTCGAATTCATCCCCCCACCCTCTGAACTCTggccactccctctctcccttcctccatACGTCCCGCCCCTGTCGGCCTGCCTGCCAGTCTGGCCctgctgtctgtctccctgcctCCATCCCATTTTCCTCCCCACCTTCCTCCCTTCCTGCCCTCTCCCCGGGCGTCTCCTGCTGTCTCTCGCTCCGCCCCTTCCTCCATCTCACCCCGTCTCCACTCCTCCTCCCCCCGCAGCCGACAGCTCCGAGGAGGACTCGGACGAGTGCACCTGTGTGAACGGCCACTGCGAGCGCGCCTACCTGAGCCTGACCTGCAAATGCAACCAAGGCTACAGACTGGACCAAAGCCGGACTCGCTGCATCGACATCGACGAGTGCACCGAGGTGATCACGCGGCTGATGCCATGCAAGAACGCCCATTGTGTCAACACCCCGGGCTCCTACAAGTGCTTCTGCAAGAGCGGCTTCTTGCCCACGCGCCTGCCCAACATCTGTTTGCGCCCCCGATCCATGTAGCACCGCCTCCctgactcacacacagaaattcagacactcacacacacacactgtcactagACTCTTGCCTTCTAAAAGACACTAGTTTCACCTCCTATGCTGCCTCACACGCATAtacccctccccacccccacctctcaGCAATCTGCTCTCCCCCCCCACTCACTATTCCCCCCTCCCAGTATTAGTGCAATCTGCAGCGTTTGGCAAACCCCACCCACCTCATCTTTTCCAGCAAGTTCTGTCGCTCCACACCGAATTTAGGGATCATTATACTGCTGCATCCTCGGGGATGGTTAGGGCtttgtcacattttttttttctttttgtgtattattattttctgattgtttttcatttttggggggttgggAACACTCCACCAAGAAAATCCCCGAAAAGAAACGCACACAAAGTACAGACCCCTTGTGTAAAACAACCAGTCCCCACGAGTCTGTGCTGGCGGTCCAGCTTGGGCCTCTCCAACAGCCAACGCTCTTCTTCCACCGAACTCAACTACGCGCCACGCCGTGCTCGGGGGTCCGTGTGAACCACAGAGCCGAGCCCAGACAGGAATGACCTCAACAATGACGGGACGCCCTCGTGAGTCCGATTCGTCTTTAGGGTCAAGCTCACTCTCCCACAATTTCTCGTTGTGCGGAGAAGACGTGTGCGTGACGTACCACAGCAAACGTACAGGGGGACCGAGGTACCGCACAGAGGTTCGAGAGCAACACAACGCATGGCCAACGCTGACCCTCTCCTGCCGTTTCTGCCATTGTCTCTTGGCGTTGCACACAAGTCTGCTGGAGGAAAGTATTTATCTTTGGgacagaaaaaagtgaaaacctGATTGTTGAATCTAAAAgggcattttttgtttgtttgtatatgtttttgttatcattaattttttttttcccgctCTCTCACTCTGTCGGATTCCCCCCCTGGTTTTGTAACTGACTGTCAGACTTGCACTTTTTCGTCTGTGGACTTGCCATTAAATTATGTCAAAATATACAGGA

Function

GO: NA

KEGG:

id description
K08023 LTBP2_3_4; latent transforming growth factor beta binding protein 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015436 True 4319 mRNA 0.59 26 9473172 9498979

Neighbor

gene id symbol gene type direction distance location
AMCG00015437 NA coding upstream 7416 9464324 ~ 9465756 (+)
AMCG00015432 NA coding upstream 30377 9440428 ~ 9442795 (+)
AMCG00015433 LOC107596124,LOC107734132,LOC558044 coding upstream 37744 9415883 ~ 9435428 (+)
AMCG00015434 NA coding upstream 71792 9399430 ~ 9401380 (+)
AMCG00015427 NA coding upstream 86147 9383674 ~ 9387025 (+)
AMCG00015435 NA coding downstream 73889 9572868 ~ 9585537 (+)
AMCG00015444 NA coding downstream 122753 9621732 ~ 9624582 (+)
AMCG00015443 LOC108440852,LOC107597921,LOC107683583,LOC107558412,LOC107710341,LOC557645,LOC107679244 coding downstream 144143 9643122 ~ 9644228 (+)
AMCG00015450 LOC100695529,LOC102800049,LOC102202559,LOC101072470 coding downstream 198321 9697300 ~ 9702772 (+)
AMCG00015461 NA coding downstream 273595 9772574 ~ 9810428 (+)
G97777 NA non-coding upstream 125928 9345762 ~ 9347244 (+)
G97770 NA non-coding upstream 142146 9327636 ~ 9331026 (+)
G97730 NA non-coding upstream 151488 9321042 ~ 9321684 (+)
G97745 NA non-coding upstream 234830 9237833 ~ 9238342 (+)
G97741 sf3b2 non-coding upstream 249915 9222636 ~ 9223257 (+)
G97989 NA non-coding downstream 156489 9655468 ~ 9657866 (+)
G97998 NA non-coding downstream 203857 9702836 ~ 9703109 (+)
G97999 NA non-coding downstream 206745 9705724 ~ 9706036 (+)
G98060 NA non-coding downstream 379480 9878459 ~ 9879136 (+)
G98195 NA non-coding downstream 697648 10196627 ~ 10197404 (+)
AMCG00015412 NA other upstream 348901 8797071 ~ 9124271 (+)
AMCG00015407 slc25a45 other upstream 436557 9029557 ~ 9036615 (+)
AMCG00015398 NA other upstream 495168 8971466 ~ 8978004 (+)
AMCG00015396 NA other upstream 519488 8951736 ~ 8953684 (+)
AMCG00015397 NA other upstream 580156 8828736 ~ 8893016 (+)
AMCG00015445 LOC102291110,LOC108440839,LOC107679294,LOC107731944,LOC102201806,LOC102799004,LOC108268318,LOC107558438,LOC570544 other downstream 125610 9624589 ~ 9631892 (+)
G98000 NA other downstream 207118 9706097 ~ 9710729 (+)
G98025 NA other downstream 258094 9757073 ~ 9760688 (+)
G98053 NA other downstream 316739 9815718 ~ 9872005 (+)
AMCG00015456 NA other downstream 352693 9851672 ~ 9862136 (+)

Expression


Co-expression Network