AMCG00015443 (LOC108440852,LOC107597921,LOC107683583,LOC107558412,LOC107710341,LOC557645,LOC107679244)


Basic Information

Item Value
gene id AMCG00015443
gene name LOC108440852,LOC107597921,LOC107683583,LOC107558412,LOC107710341,LOC557645,LOC107679244
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9643122 ~ 9644228 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015443
ATGTCCACAGAGAACGGCACGGGCACCCCCCTGGTGCCCACCGGGCTGCCCTCCAACTCTTCCCTGGCCTACACCGGGCTGGATCAGGAGCTGGATGCCAGCAAGATCGTGATCCCCTCCATCTACGCGCTGGTGTGCTGCGTGGGGCTGACAGGCAACGCCATGGTGATCTACGTGATCCTGAAGTACGCCAAGATGAAGACAGCCACCAACATTTACATCCTGAACCTGGCTATCGCTGACGAGTTGTTCATGCTGAGCGTGCCCTTCCTGGCCACGGCGGCCGCCCTGCACCGTTGGCCATTTGGCTCCCTGATGTGCCGTCTGGTGCTGAGCGTAGATGGCATCAACATGTTCACCAGCGTCTTCTGCCTGACGGTGCTGAGCGTGGACCGCTACATCGCCGTGGTGCACCCCATCCGGGCTGCCCGCTACCGCCGCCCCACCGTGGCCAAGGCCATCAACATCTGTGTGTGGGTCCTCTCGCTGGTGGTCATCCTGCCCATCATCATCTTCGCCGACACAGTGCCCTCTGGGGATGGCGTGGTAGACTGCAACTTCCGGTGGCCTGAGGCGTCCTGGTCGGAGGCCTTCGTGGTCTATACCTTCCTCCTGGGCTTCCTACTGCCTGTGGTGGCCATCTGCATGTGCTACTGCCTGATCGTGGTCAAGATGCGGGCGGTGGCCCTGAAGGCCGGCTGGCTACAGCGGCGCAAGTCGGAGAAGAAGATCACGCGCATGGTGATGCTGGTGGTGGCCGTGTTTGTGGTCTGCTGGATGCCCTTCTATGTCACCCAGCTGCTCAGTGTGTTCTGGGCGCCCCCCAACCCCACCATTACCCAGCTCTTCGTCATCCTCAGCTACGCCAACAGTGGTGCCAATCCCATCCTGTATGGCTTCGTCTCCGACAACTTCCGCCGCTCCTTCCAGCGTGTGGTGTGCTTCCGCTGGATGGAGGGCGGGCTGGACGGCGAGCAGGTGGACTACTGCGCTGTGTCCCTGCGCCGTCCGGTAACCTGCGGGCCTCGCCACAGCACCAAGGACTGTCTGGCCTCCGACACAGTGTACCGCAATGGCACCTGTGCCTCCCGCACCACCATGTTGTGA

Function

NR:

description
PREDICTED: somatostatin receptor type 1-like

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0038170 somatostatin signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004994 somatostatin receptor activity molecular_function

KEGG:

id description
K22872 ASTC-R; allatostatin C receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015443 True 1107 mRNA 0.62 1 9643122 9644228

Neighbor

gene id symbol gene type direction distance location
AMCG00015444 NA coding upstream 18540 9621732 ~ 9624582 (+)
AMCG00015435 NA coding upstream 57585 9572868 ~ 9585537 (+)
AMCG00015436 NA coding upstream 144143 9473172 ~ 9498979 (+)
AMCG00015437 NA coding upstream 177366 9464324 ~ 9465756 (+)
AMCG00015432 NA coding upstream 200327 9440428 ~ 9442795 (+)
AMCG00015450 LOC100695529,LOC102800049,LOC102202559,LOC101072470 coding downstream 53072 9697300 ~ 9702772 (+)
AMCG00015461 NA coding downstream 128346 9772574 ~ 9810428 (+)
AMCG00015455 NA coding downstream 171903 9816131 ~ 9819910 (+)
AMCG00015457 NA coding downstream 180687 9824915 ~ 9842408 (+)
AMCG00015458 NA coding downstream 219520 9863748 ~ 9868818 (+)
G97777 NA non-coding upstream 295878 9345762 ~ 9347244 (+)
G97770 NA non-coding upstream 312096 9327636 ~ 9331026 (+)
G97730 NA non-coding upstream 321438 9321042 ~ 9321684 (+)
G97745 NA non-coding upstream 404780 9237833 ~ 9238342 (+)
G97741 sf3b2 non-coding upstream 419865 9222636 ~ 9223257 (+)
G97989 NA non-coding downstream 11240 9655468 ~ 9657866 (+)
G97998 NA non-coding downstream 58608 9702836 ~ 9703109 (+)
G97999 NA non-coding downstream 61496 9705724 ~ 9706036 (+)
G98060 NA non-coding downstream 234231 9878459 ~ 9879136 (+)
G98195 NA non-coding downstream 552399 10196627 ~ 10197404 (+)
AMCG00015445 LOC102291110,LOC108440839,LOC107679294,LOC107731944,LOC102201806,LOC102799004,LOC108268318,LOC107558438,LOC570544 other upstream 11230 9624589 ~ 9631892 (+)
AMCG00015412 NA other upstream 518851 8797071 ~ 9124271 (+)
AMCG00015407 slc25a45 other upstream 606507 9029557 ~ 9036615 (+)
AMCG00015398 NA other upstream 665118 8971466 ~ 8978004 (+)
AMCG00015396 NA other upstream 689438 8951736 ~ 8953684 (+)
G98000 NA other downstream 61869 9706097 ~ 9710729 (+)
G98025 NA other downstream 112845 9757073 ~ 9760688 (+)
G98053 NA other downstream 171490 9815718 ~ 9872005 (+)
AMCG00015456 NA other downstream 207444 9851672 ~ 9862136 (+)
AMCG00015464 NA other downstream 285364 9929592 ~ 9930846 (+)

Expression


Co-expression Network