AMCG00015445 (LOC102291110,LOC108440839,LOC107679294,LOC107731944,LOC102201806,LOC102799004,LOC108268318,LOC107558438,LOC570544)


Basic Information

Item Value
gene id AMCG00015445
gene name LOC102291110,LOC108440839,LOC107679294,LOC107731944,LOC102201806,LOC102799004,LOC108268318,LOC107558438,LOC570544
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9624589 ~ 9631892 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015445
ATGCCCCCCCCTAGAGCCAGCGTGCCCCTCACAGAGCCACGCCACTGGGGTCAGAAAGCCTTTCCCTGGGAGCCGTCGGGGAGACGACTGCAGGGGGCGCTAAGCGGCTTCCTCGCCGGTCGCCACAGAGCGGCCAGCCGGCACCACAGCGCTCTGTGTCCGGGAAGTCAGCTGTCACCGCGGCCACCAAAACACCGACGAGGCGAGGGGGGTGCTGTTGTAAACGGGAACATGAGCCGCAAAAGGGGCCAGTTCTTCCCTGCCAACAGCGTCGAGGCGCCGGGTCCGCACCAGGGATTCGCCATGGACCCGAGCAGAACCGAGGGCTTCTCGGAACTGGAAGCCGAGCCGGAGGAGCTGCTGGTGGATATCACGGAGCACCTCGGCCGGAGCATCTCGCTGGTGCTGGAGACGGCGCTGCGCGACATCAGGAAGCTGGTGAACGCCAGGATCCGCGTCCTGAAGGTGGAGCTGCAGGAGAAGAGCACGGAGATCGACGTCCTCCGAGTGCGGCTGCAGGCGGCGGAGAGGGAGGCCCGGGCTCCGCGGGCGGGGGGCGGGGATGTCGGGATGGGGGGCCTCGCCAAACTCGCGTCCCGGCGGCCCGACTATGCGGGCAGTAAACACGGGGAGCACAAGCGGTTCCGGTCGGGCGCGCCTGCGGTGAAGAAGGAGAACATCAACGCGATCTGCGACTACCTGCGGAAGGACAAGGACGCCCGCGACGGCGACCCCGGCGTCAGCGACCCCTCCAGGGCGGACAGGGAGGGCGCGTCCGACCCCTCGGCTCCGCTGTGGACCGAGTCGAGCAGCGGCGGCGAGGAGCAGGAAGACGGCGAGGCGGCCCCGGCCACCGAGGAGCTGTTCAGCATGCTGCCCACCGACAGCAAGCGCCTGGAGGAGTACGAGTCGTGGATAGCTGGCATGGACTACGTGTCTGAGCTGCACCAAGGTGTGAAGCAGTTGAAGTGTGAAAGAAACTCTCACCAGTACGGCGAGGACGCAGTCGCGGGGCGGGACGACTCCcaggttgggggtggggggccggGAGACCTGCTACTGCCCCCAGAATTCCCCTCTAAGAAGGAGAGTGGCGGGAGCCGGTTCGGGCCAGGGCAGGAGCTGGAGGGGGCCGGGGCAGGAGCGGACGGCAGGGGGGAGCCGGGGGAGAGAGCGGAGGGCGCGGATCAGACCGCCACAGcCCTGCCCTATCACGCCGACGCCTGCCTCTGCCCTCGCTGCGGAACCTTCTGCCCCAGCGCCGCGTTCCTGGGGGAGCACTTGAAGGCGGCGCACGGGGAGGACACGGGTGCCGGCCCGGGCAGGTCACCTCCGCCGACCAGAGCCAGGCCGCCCAGCAACGTGCTGGGCCGGGACccgggaggggagggggaggcggGGAAAGGCGTGCCCGGGGAGAAgcagcgaggaggaggagggggcaggGGCGGGAGCTTGTCGCAAAAAAGGGGAGTACGAATCAGACAACGGCCGTAG
>TU122162
TACGAGTGCGCCGACTGTGGCCGGCGTTTTAATTACCTGGGCAACCTGCGGCAGCACCAGAGGATCCACACGGGGGAGAAGCCGTTCACCTGTGAGGAGTGCGGGGAGCGCTTCCGGCACGCCGCCCAGCTCAAGAGCCACCGCCTGAGCCACAGCGGCGCCCAGAGCCCCTTCTCCTGCCCCCAGTGCGGCAAGGGCTTCCCCGTGCTGTCCGGCCTCAAGAGGCACCAGCGCGTGCACACGGGGGAGAGCCCGTACCAGTGCGCGCAGTGCGGCCGCCGCTTCAAGGAGCTGGGCAACCTGTACACCCACCAGCGCATCCACAGCGGCGCCACCCCTTACCAGTGCGCCCAGTGCCAGCGGAGATTCAGACACCTGGGTACCTACAAGAGCCACCGCTGTGCCGCGGCCCAGAACCCGAGTCTGGTGCCCGCGGACATAGACTGACTTCCGCCCCCTACCACCGACGCAGCTCGAGTGGCTGCGGACATATTTTGGGACACTAACTGCCCCCACGATGGGCAGAGAGCTGAGAATGAGCATCGACACACGCGGATTCCACCTACACTGGTAtcgtttctgtttttttgtgtttgcgaAAGGAGCTTGTCGCAAAAAAGGGGAGTACGAATCAGACAACGGCCGTAGAAGGTCACTTGAGAAGAGTCGAGCGCAGTGGAAGTGGGTTCAAATCCACGCTAGGCCCGGGAGATAGAGGCAGAAACACTACCCTAGAACTCCCTGTTTGGAGGAAGTGAAACTCTAGGGATACAAGGCTGGGTTCGCAGACCTAGATTATCTCTGGTCATAGTTTACTAGTCTACTTGGACATCGCTTTTGTGCGTCAGTATATTTTTTCCCATTGGGGAGGGGGAAGCATTAAAAAGGCAACACTAAACATGCTACACACGAGAATAGAAGGAGGAATGTTAAGATGGGTTTAAAATTGAATAGGGAACATACTGGCTGCTTTACTCTGCTGGCAGGAGGCCGTGTGTTCATGTGCTGCTGTCACGATCTGAAATCTTAGTCGATCCAGCCCTTGGAAATAAAGGGGAGGTTCCCATGCTGTACAGCACAGAACTAATCTTTTAAAGCTTTTGAACCTTTAACGATGCCAACATTTAAACTTTCTACATCGTGTGTCACAATGTTTTACAACATCGCGTCTCTAATCCATCGGatgttattttcagaaaacttaAGTTCTTAAACATTAAACAGATCACTCTTAACCTAttacataataatgaaaacactaCATAGAGTAATTTCTGTTTGTGACAATAGCAAATCACAAGTTACAACTGTTGTTAAACCGCACATTTTACAatctaaaatgtgttaaaaatggcgcagtgatgttttttattttttaattgacagtGAACCTCCCCTTTAATAAAATCGGGGTCTGCATAACAATAACTGCATTCTACATACTGATTTTCTGACTAGTAAGTAGTGTGGTACGCAGTATGAAGATGAATGATTCAGTGTACTATATATGTCATGTGACCTCAcgtgaagcatgatgggatgcagTATTCATTGTAGCAAGCTCTGGTTGTATACGGCAATTTTGGCGAATGTAGCAAGCCATCAGGGTACTTTCACCATACGACACATTCATATACTATGTCCAATATGCATACTGCAAGCATACTACTGCAATGCTGGAATGTAGTACGTGTAGTGTGGTAGTATGTGATTTCGAATACAGCCTGCGTCACACAACACCTCACGCTATTGGCTGTGGCCCGATATTCCAGATCGCCTCGTTTTCCAGGCCTCCCTCCCACGCCCCCCCGAGAGAGGGACTGTGCTGTTACTGGACTCTGCTTGTGCTGCTGGTGTTGAGTgagatttttcattttaggaGGAACTGCAATTCTCCAGCGAATAAAGAAGCAGACAAAAGAAACGCCCTATGCTACCGGTGTCCCTCCCACATTGACTGGCCTTGCTAGGGAATACATAACAAGGTGTGAACTGCGTGTTTTCATATGGTTTGAAGATCCCCCCCCAAAAGAAACAACACCTTTTAGATGGAGAGTTCATTCTCCCAGCAAAAAACggagagatctgaaaacaaGAAACCACTCTTCCCACACACTTCACCCCCCCCCACTGATTTGATGACGATCCTTCAACGTCGGGAGAGGAGTGTGAAGTGTGTGGGAGTGGCTGTTCATGTTGTCCATGCTGTTTCGAGGGTCCCCCACAGCCAGACAGTTCGGACAGAGACGCACCGATGAGATTGCATCTGGCCTCTAAGATGTAGGTTTTGAAAACACACACGTTTCTGGcatcacaatttaaataataatcataattacagCAGCAGAAGGTCAAACACACTGAGCCAGGCCTAGAGCCGCCACAATAGGCCTGGAGTTTCAAAGATCTTCCCTGCGAAGCACAGCAAGGAAGCGTGCTCATCCTCTCTTGTGACGGTGACCTGTGTTCGTGCTGGATGCATACCTGCAGCTCACTAGGATACGGCAGGCTGTACTGACCAGGCACGGGCAATGCTGCCACCTTGTGGACCGCCTCCACCACTACCCCTGGGGGGACGGCAGAGACTGTCCCCTTGCCGAAGAGCTGGCTTTCATAAAGTTTATTCGTTTGGAAAGTGATTATAAGGTGGCAGGGTCTGGTGGTCAGCctcaattaaatgttattaattataagTGTTATAATTGCACTGGCGTAGATGGAGTTGTTTGTAAAGCTGAATTGAAATAAAGTTTT

Function

NR:

description
PREDICTED: zinc finger protein 23-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015445 False 1497 mRNA 0.69 5 9624589 9629786
TU122162 True 2754 lncRNA 0.49 1 9629139 9631892

Neighbor

gene id symbol gene type direction distance location
AMCG00015444 NA coding upstream 7 9621732 ~ 9624582 (+)
AMCG00015435 NA coding upstream 39052 9572868 ~ 9585537 (+)
AMCG00015436 NA coding upstream 125610 9473172 ~ 9498979 (+)
AMCG00015437 NA coding upstream 158833 9464324 ~ 9465756 (+)
AMCG00015432 NA coding upstream 181794 9440428 ~ 9442795 (+)
AMCG00015443 LOC108440852,LOC107597921,LOC107683583,LOC107558412,LOC107710341,LOC557645,LOC107679244 coding downstream 11230 9643122 ~ 9644228 (+)
AMCG00015450 LOC100695529,LOC102800049,LOC102202559,LOC101072470 coding downstream 65408 9697300 ~ 9702772 (+)
AMCG00015461 NA coding downstream 140682 9772574 ~ 9810428 (+)
AMCG00015455 NA coding downstream 184239 9816131 ~ 9819910 (+)
AMCG00015457 NA coding downstream 193023 9824915 ~ 9842408 (+)
G97777 NA non-coding upstream 277345 9345762 ~ 9347244 (+)
G97770 NA non-coding upstream 293563 9327636 ~ 9331026 (+)
G97730 NA non-coding upstream 302905 9321042 ~ 9321684 (+)
G97745 NA non-coding upstream 386247 9237833 ~ 9238342 (+)
G97741 sf3b2 non-coding upstream 401332 9222636 ~ 9223257 (+)
G97989 NA non-coding downstream 23576 9655468 ~ 9657866 (+)
G97998 NA non-coding downstream 70944 9702836 ~ 9703109 (+)
G97999 NA non-coding downstream 73832 9705724 ~ 9706036 (+)
G98060 NA non-coding downstream 246567 9878459 ~ 9879136 (+)
G98195 NA non-coding downstream 564735 10196627 ~ 10197404 (+)
AMCG00015412 NA other upstream 500318 8797071 ~ 9124271 (+)
AMCG00015407 slc25a45 other upstream 587974 9029557 ~ 9036615 (+)
AMCG00015398 NA other upstream 646585 8971466 ~ 8978004 (+)
AMCG00015396 NA other upstream 670905 8951736 ~ 8953684 (+)
AMCG00015397 NA other upstream 731573 8828736 ~ 8893016 (+)
G98000 NA other downstream 74205 9706097 ~ 9710729 (+)
G98025 NA other downstream 125181 9757073 ~ 9760688 (+)
G98053 NA other downstream 183826 9815718 ~ 9872005 (+)
AMCG00015456 NA other downstream 219780 9851672 ~ 9862136 (+)
AMCG00015464 NA other downstream 297700 9929592 ~ 9930846 (+)

Expression


Co-expression Network