AMCG00015456


Basic Information

Item Value
gene id AMCG00015456
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9851672 ~ 9862136 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015456
ATGGATGGACAGGGGGACAATCGGGAGGCGGAGAGCCAGGCCGCGCTGGTGCTGGAGCTGCAGACTCGGCTGGAGGAGCAGAGGGGGCAGGCCCGGCAGAGGCAGCAGGAGCTGGAGGCGGAGAGAGAGCGGCTGAGGCAGACGGCGGAGGCCCTGGGCGAGGCACGGAGGAAGATGGAGGCCTTGAAAGGCGAGAGTGAGCTGGCCGGGGAGGAGCTGCGCCGGCTGCACAGTGAGGTGGAGCGGCTGCGGCTGCAAAGAACAGAGTTGGCTCAGCTGCGGGAGGAGAGGAGCCAGCTGGAGCGCGAGAGGGAGGGACTGCGCAGCTCCTTGGACTCACTGAGGGCTGCAGCACGCAAGGGAGACCAGCTGGAGCTGTCCATCCAGACACTGAAGGCGGAGTGTGAGCGGCTGGGGCGGAGCCTGGAGGCGGCGCAGCGGCGGGGGGAGGAGCTGGAGGCGGAGCTGCGGGAGGCTGCTCTGGAGGCAGGGTCCCTGGGCCAGGGGCGGGACCAGGCGGTGCTGGAGGTGCGGCGGCTGGAGCAGGAGAAGGAGGCGGTGCTCAGCCAGCTGGCCGGGCAGGAGCGGGagcagaggcagagggagagggaggtggcCCGGCTCCGGCAGCAGCTCGAGAGCACCGCCTCCGCCCTGGAGCACAGCACCCAGAGAGCCTGCAGCCTGGAGACGGACAACAGGCGTCTGCAGCAGGATGTTTGTCGGCTGCAGGAGGAGCAGGTGCAGCTGGAGGGGCTGCAGACTGAGGTCCACGAACTGAGAGCGCTAAGAACTCAGCACCAGAGCAGCCTGGCCAACCTCACacagGGGTCTCAGCCCTGCGGACGGGTCCTGACCCCCAGCCCCACTCCGACACACCAGCCCCAGGACAAGAGAGATGAAGACAGCACAGGAATGGACCTCACTGACAGGGAGCCTACTAATACTACAGGGGGACCCCAAACCCCCTCAGCCGGCCTGGACCCCCCTTCTGCACCCCCAACACAGGAGACGGTACCCCTAAGCTCCAGACCGTCACCTCAAGGGACAGGAGGCACAGATATAGCCAGACTGGTCGAGCAACCGCAAAAACCTGATAAGCTCCACCAGGATAAAATCAGGAATGCCGACGCCATAAGCTGCAGGGTACCCCAAACTCAGGAAGTGCCAGACGGCCGAGAACTCCCAACCTCTGACCTCAAGGTGACCCCTGACCTCCAAGGCACAGCGTCTACTCCCCTGAAAGTAGAGGGCACTCCTGGCATTCCTCACCCGACCTTCAACAGGGATGCGGGGCCCACCCTGACCTTTGAACCCCAGGACAGGAGGGAGCCTCTGAGCGCCCGGCTGATCGAGGTGGAGAGGAAGAATGCATCACTGCAGGCGGAGCGCGATGCCCTGGGTAACCAGCTGGCTCAGAGTCAGCAGCAGTGCGGGCGGCTGCAGGAGCAGgtGGAACGGGCGACCCTGCTCTCTCAGCATGCTGCTCTCCAGTCTCGCTGCTCGGAGGCGGGGTCTCGTGTCGCTGCCCTGGAGGCTGAGGGGCGGGGCCTAGTCAGAGAGAAGGAGGAGCTGCGTGGGCAGTGGGAGGGGCTGCGTCGAGACCACGCCCAACTCACCACCCTGCACCAGCGGCAGGAaAcccacagggagagagagagagagctggagagactACGAGAGGACAACATCAGGCTGGCCACTCAGCAGAGGGAGTCTGCGCAGGTGCAGACAGAGCTGTGTGCGCAGGCCTCGGCTCTGCGTGGGGAGCTCGGCGCCCTGCAGCTAGATAAGACCCGGTTGGAGACCGAGCTGAACTCCCTGAGAGAGCAGAACCAGAACCTGGACATCACCTCAGCCCGGCTCAGCAGCCAGTACCAGCTAAAGGGgaccctggaggaggagaaccGAGCCCTGGTGGAACAGAACCAGAGTCTGGGCCGGGAGAACCGAGCCCTGCTGGAGAGGAAGAAGCAGAAGCTGGTAGAGAAGATCATGGACCAGTACCGGGTTCTGGAGCCAAACATGCCTGTGCCAAGCAAGGCTAAGAAGGGCAACTGGATCACTGACCGGATGAAGCGGCTGATGAAGCCACGGGGCCGCGAGGGCCGGGAGCCGCTGCGCGCCCACTTCATCGCCGCCGGCAGCGTAGAGAACCTGGCCCAGGGCAaCCCCCGCAGCGCCCCCGTGTCCCCCTCCCCGCTGAGGAAGGCCACCAGCTCAGTGAGTGTGTGCGACGATCACCACGGCCCCCAGCGTGCCGGCCGCCACAAGCTCAGTTCCCGCTACCCCGTCTCCATGTCCTTCAGCCCTGGGGACGTCCGGCCCACGCCACGCCAGCGCTTCCGCCAGCGGGGGACCAGTGTGCACGGCGAGCTCCCGGCAGAGGACAGCCCCCCCAGCAGGGACAGCCTGACCTCCCTGGGTGAGGCCACAGAGGAGGAGAAAGACTGCCAATCAAGGGACCAATCACCTGTGACCAAGAAGAACAGCCTCCCATCGCACTGATGATTCCAGTCCACTGCAGCCCAGTTCAGTCCCAGACCCTGTCCACTCAGGTCAACTACTGTCCCAGTTCAGTCCACCCGACTCCACTCCACTGCAGTGCACCAGAGAGAGTGCcttactgtactgcactgtcaGAGAGAGAGCGTGTCTGCACTGTACTGGAGACAATGCCTTATATACCGTTACCACTGGCCTTGTTTAGGTGCACTTCGGCGTGGGCTGTAACCGTACACATAAACTTTGCTGCCTGCGTTTCCATTCATTGTCTTgaggtacagctgccctaggaaaTGAAAGTGAGGCACGAAAGGTCAAAATGCATTCTGGGCCACTCGTCATTTTGGGATTTAGTGTTAaaaaactggaggctgaaatacctctAACATTAAATTGTCCTGCAGGGCACTGTGCCAAAGGTCCAACCTGATTGTACTGGATTGAGTAGCATCGCATCCTGATGTCTCAGCTctaataaattatgtgtttatctccaagatggctgacctgtttattattattattattattattattattattattattatcatcatcatcatca
>TU122272
AGCAGTGAGCGagagcagccaatcagcagaGCTCAACTCAGACAAGTCCCACCCATCATCTGGAGCTGAAGACTGCCAATCAAGGGACCAATCACCTGTGACCAAGAAGAACAGCCTCCCATCGCACTGATGATTCCAGTCCACTGCAGCCCAGTTCAGTCCCAGACCCTGTCCACTCAGGTCAACTACTGTCCCAGTTCAGTCCACCCGACTCCACTCCACTGCAGTGCACCAGAGAGAGTGCcttactgtactgcactgtcaGAGAGAGAGCGTGTCTGCACTGTACTGGAGACAATGCCTTATATACCGTTACCACTGGCCTTGTTTAGGTGCACTTCGGCGTGGGCTGTAACCGTACACATAAACTTTGCTGCCTGCGTTTCCATTCATTGTCTTgaggtacagctgccctaggaaaTGAAAGTGAGGCACGAAAGGTCAAAATGCATTCTGGGCCACTCGTCATTTTGGGATTTAGTGTTAaaaaactggaggctgaaatacctctAACATTAAATTGTCCTGCAGGGCACTGTGCCAAAGGTCCAACCTGATTGTACTGGATTGAGTAGCATCGCATCCTGATGTCTCAGCTctaataaattatgtgtttatctccaagatggctgacctgtttattattattattattattatcatcatcatcatccagcACGCGCCTTTATTCAAGTTGATTGGCAGGAGTtgtacacactctctctctgtgtcactgaAGTCACCAGCACTGCTCTCTGCCCCGCTGCCTCTTGGCCCCAGTTCTTCCACAGCTGAAGTGAGGAATGTGATCAACAAGACTGTATGGTGCTCAAGTGTGTATTGTAGATCAATACTGGATTTTGCTAATTTAACCTGTAttataactataatatatacagctcaTCTACAACCTGACAAAATGTTCACCATTGGTCAACTGTACAACGGaagggtgtagactttctataggtgctgtatatattaaattcagatttgtatttttaatatatattttttccacaataaaatgttttccccttaacagtgtggagttgGTGTGTAGAAAAGTGGGGGAAATCCTCATTGAAATCATGAAACTCTCAGGTACtgacactaaaaaaaaaaagttcaatagGCACTGTATACAGCAATAGGCTCATTTCGCTTTGTTaacattgtatattaattaCGGGGTTGTTCATTTAACATTATTCTTACATTTGCATATGTGTATAATGTGCACACACAcgaattatattaattatcgTTCTCTACATCGTATATACATCTAAAAATGGCACGCATCGTGCGCAGATGGC

Function

GO: NA

KEGG:

id description
ko04664 Fc epsilon RI signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015456 True 3070 mRNA 0.62 15 9851672 9861488
TU122272 False 1319 lncRNA 0.43 3 9859098 9862136

Neighbor

gene id symbol gene type direction distance location
AMCG00015457 NA coding upstream 9264 9824915 ~ 9842408 (+)
AMCG00015455 NA coding upstream 31762 9816131 ~ 9819910 (+)
AMCG00015461 NA coding upstream 41244 9772574 ~ 9810428 (+)
AMCG00015450 LOC100695529,LOC102800049,LOC102202559,LOC101072470 coding upstream 148900 9697300 ~ 9702772 (+)
AMCG00015443 LOC108440852,LOC107597921,LOC107683583,LOC107558412,LOC107710341,LOC557645,LOC107679244 coding upstream 207444 9643122 ~ 9644228 (+)
AMCG00015458 NA coding downstream 1612 9863748 ~ 9868818 (+)
AMCG00015459 NA coding downstream 7006 9869142 ~ 9872454 (+)
AMCG00015467 NA coding downstream 49143 9911279 ~ 9915357 (+)
AMCG00015465 NA coding downstream 58850 9920986 ~ 9925429 (+)
AMCG00015466 LOC107741474,LOC107557052 coding downstream 73007 9935143 ~ 9943673 (+)
G97999 NA non-coding upstream 145636 9705724 ~ 9706036 (+)
G97998 NA non-coding upstream 148563 9702836 ~ 9703109 (+)
G97989 NA non-coding upstream 193806 9655468 ~ 9657866 (+)
G97777 NA non-coding upstream 504428 9345762 ~ 9347244 (+)
G97770 NA non-coding upstream 520646 9327636 ~ 9331026 (+)
G98060 NA non-coding downstream 16323 9878459 ~ 9879136 (+)
G98195 NA non-coding downstream 334491 10196627 ~ 10197404 (+)
G98255 NA non-coding downstream 461122 10323258 ~ 10323970 (+)
G98244 LOC106578020 non-coding downstream 476972 10339108 ~ 10340845 (+)
G98277 NA non-coding downstream 503246 10365382 ~ 10365647 (+)
G98025 NA other upstream 90984 9757073 ~ 9760688 (+)
G98000 NA other upstream 140943 9706097 ~ 9710729 (+)
AMCG00015445 LOC102291110,LOC108440839,LOC107679294,LOC107731944,LOC102201806,LOC102799004,LOC108268318,LOC107558438,LOC570544 other upstream 219780 9624589 ~ 9631892 (+)
AMCG00015407 slc25a45 other upstream 815057 9029557 ~ 9036615 (+)
AMCG00015398 NA other upstream 873668 8971466 ~ 8978004 (+)
AMCG00015464 NA other downstream 67456 9929592 ~ 9930846 (+)
AMCG00015475 NA other downstream 139078 10001214 ~ 10012888 (+)
G98093 NA other downstream 223292 10085428 ~ 10086512 (+)
AMCG00015492 NA other downstream 350865 10213001 ~ 10222496 (+)
G98251 NA other downstream 454772 10316908 ~ 10317325 (+)

Expression


Co-expression Network