AMCG00015474 (syvn1)


Basic Information

Item Value
gene id AMCG00015474
gene name syvn1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9988652 ~ 9996158 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015474
GGGAACTCGGGGAAGAGTTTATTTAGGAAATAGTCGCATAAATGACCTGCAAAGCGTCGCACCCCTAAAGAGCAACTCCTCAAAGATCTAAAAAGGCGAAAACGCTGCCCATCCTTTCAAACGCAGCAGCGGCGTCAACTAGCAAACAGACAGACGGCGTTCTGCAAACTTGCAGCGGAGTTGGTACGACCCAAAACGGGGGGGGACACGGGAGACTACTTCTTAAACCGTGGGTCTTGACACCGATATAGCGCCCTGCGTGGCTGTTTTAATCTGTCCATTAGACGGTAACGTGGCCGATTTCATCCAACAAAACACGCAACAACAAATTGAACACATTTCGGGAGATCTCGTGTGGTGTTGGTAGCGCCCTGGCGGAAGTGAGGTGTCTGTACCTCTCTGACCAGGATAAACACGCAGCTGGGCGAGAGAGCAAGAGAAGCCCCCAACCACACAAAAGCACTGACAGACGAGCAGAGCAGCGGAGCCCCGCCGACGGCCACCGCAGCCCGGACGACTCGGACCCGGCTTCCCCCGGGAGTCTTTCCCCACCGAGCAGACCGCGACTGGGGCGTCCCGAAGCAGCCGGGGGAGGATCACGTTCCGCCGGCgtgagagacggagagagtCGtgacgGGGGGTGCCATGGTGCGTGCTGCCATGGTGACGGCCACCAGTCTGGCCCTGACGGCAGCGGTGGTGGCTCACGCCTACTACCTCAAACACCAGTTCTACCCCACTGTGGTCTACCTCACCAAGTCCAGCCCCAGCATGGCCGTGCTGTATATCCAGGCGTTCGTGCTGGTGTTCCTGCTGGGGAAGTTCATGAGGAAGGTGTTCTTCGGCCAGCTGCGAGCCGCGGAGATGGAGCACCTGATTGAGCGCTCCTGGTACGCGGTGACGGAGACTTGCCTGGCCTTCACGGTGTTCCGGGATGACTTCTCCCCGCGCTTCGTGGCTCTCTTCACCCTGCTGCTCTTCCTCAAGTGCTTCCACTGGCTGGCTGAGGACAGGGTGGACTTTaTGGAGAGGAGCCCCAACATCTCCTGGCTCTTTCACTTCCGAGTGCTGTCTCTGATGGTGTTGCTGGGAGTGCTGGACTTCCTGTTTGTGAGTCATGCGTGTCACAGCATCATCACCCGCGGGGCGTCTGTGCAGCTGGTGTTTGGGTTCGAGtATGCGATCCTGATGACCATGGTTCTGACCACCTTCATTAAATACACCCTGCACACTGTGGACCTGCAGAGCGAAAACCCCTGGGACAACAAGGCTGTGTACATGCTCTACACAGAGCTCTTCACagGCTTTATTAAGGTGTTGCTGTACATGGCGTTCATGACCATCATGATCAAGGTCCACACCTTCCCCTTGTTCGCCATCCGACCCATGTACCTGGCCATGAGgcagttTAAGAAAGCTGTGACAGATGCCATCATGTCCCGCCGGGCCATTCGCAACATGAACACGCTGTACCCTGATGCCACCCCAGAGGAGCTGCAGGCTACAGACAATGTGTGCATCATCTGCCGGGAGGAGATGGTGACCGGAGCCAAGAGACTGCCCTGCAACCACATCTTCCACTCCAGttGTCTGCGATCCTGGTTCCAGAGGCAGCAGACTTGCCCCACCTGTCGCATGGACGTTCTGCGCGCCTCACTGCCCAATCAGACACCAGCACCACCCCCTGCCCAACCCCCTGCCCCGCCTCCTGCTGCCAACCCTCCAATTGCAGCACCCGGCAATGTGCCCCCTGGAATGATGCCTCCCTTCCCCCCAGCCATGTTCCCATTCTGGGGGCCCTTTCCTGCAGCTGCCCCCCCTGCTGGGCCTCCCCCTGCCGCCCCAGGACCCCCAGAGCCACCTCAGACCAGCACTGCGGCCACAGAAACACTGGGGGCAGgaGCTCCTGGCCCCAGCCGTGCCACTCAGCCTGGATCTGAGGCCCCTCCTGCCGCCGCAATCCCAGGATTCCccttctccttccctccccccTTCCCAACAGCCCCCTGGCTGGGCATGCCGCCACCTCCGCCCTTCGgtCTGCCGTCGCCCCCCGTGCCCCCGGCTGGGTTCAGTGGTCTGAGTGAGGAGGAGCTGGGCGAGCTGGAGCGGGAGGGCCGGCGGGGGCTGGAGGCGCGGCTGCAGTGTCTGCACAACATCCACACGCTGCTGGATGCCGCCATGCTGCAGATCAACCAGTACCTCACTGTGCTGGCCACCGTCAGCCCCCCCAGGCCGTCGCCCCCCCGGCCCAGCAGTGCCGCCCCTGAGACGGTGAGCGCGGAGACAGTGTCCCCCCCAGCCCCGGAGCAGAACGGCACCGCGGGGCCGAGCACAGACAGCAGTGAGTCAGACCGCCAGAGTGCACTATCCCACACTGCGTACTCCACCGCAACCCTGAGCTGA

Function

symbol description
syvn1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of Hrd1p ubiquitin ligase complex. Is expressed in several structures, including axial mesoderm; floor plate; hatching gland; hypochord; and notochord. Orthologous to human SYVN1 (synoviolin 1).

NR:

description
E3 ubiquitin-protein ligase synoviolin

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0016567 protein ubiquitination biological_process
GO:0018279 protein N-linked glycosylation via asparagine biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10601 SYVN1, HRD1; E3 ubiquitin-protein ligase synoviolin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015474 True 2406 mRNA 0.61 15 9988652 9996158

Neighbor

gene id symbol gene type direction distance location
AMCG00015472 NA coding upstream 2157 9982802 ~ 9986495 (+)
AMCG00015463 NA coding upstream 23198 9961526 ~ 9965454 (+)
AMCG00015462 NA coding upstream 41586 9945834 ~ 9947066 (+)
AMCG00015466 LOC107741474,LOC107557052 coding upstream 44979 9935143 ~ 9943673 (+)
AMCG00015465 NA coding upstream 63223 9920986 ~ 9925429 (+)
AMCG00015476 rpb7,POLR2G,polr2gl,polr2g coding downstream 16908 10013066 ~ 10015706 (+)
AMCG00015473 eef1g,LOC107661998 coding downstream 20298 10016456 ~ 10027569 (+)
AMCG00015484 NA coding downstream 85846 10082004 ~ 10083086 (+)
AMCG00015483 NA coding downstream 98931 10095089 ~ 10099174 (+)
AMCG00015480 NA coding downstream 162670 10158828 ~ 10161768 (+)
G98060 NA non-coding upstream 109516 9878459 ~ 9879136 (+)
G97999 NA non-coding upstream 282616 9705724 ~ 9706036 (+)
G97998 NA non-coding upstream 285543 9702836 ~ 9703109 (+)
G97989 NA non-coding upstream 330786 9655468 ~ 9657866 (+)
G97777 NA non-coding upstream 641408 9345762 ~ 9347244 (+)
G98195 NA non-coding downstream 200469 10196627 ~ 10197404 (+)
G98255 NA non-coding downstream 327100 10323258 ~ 10323970 (+)
G98244 LOC106578020 non-coding downstream 342950 10339108 ~ 10340845 (+)
G98277 NA non-coding downstream 369224 10365382 ~ 10365647 (+)
G98282 NA non-coding downstream 382449 10378607 ~ 10379031 (+)
AMCG00015464 NA other upstream 57806 9929592 ~ 9930846 (+)
G98053 NA other upstream 116647 9815718 ~ 9872005 (+)
AMCG00015456 NA other upstream 126516 9851672 ~ 9862136 (+)
G98025 NA other upstream 227964 9757073 ~ 9760688 (+)
G98000 NA other upstream 277923 9706097 ~ 9710729 (+)
AMCG00015475 NA other downstream 5056 10001214 ~ 10012888 (+)
G98093 NA other downstream 89270 10085428 ~ 10086512 (+)
AMCG00015492 NA other downstream 216843 10213001 ~ 10222496 (+)
G98251 NA other downstream 320750 10316908 ~ 10317325 (+)
AMCG00015504 NA other downstream 415729 10411887 ~ 10418700 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007896 syvn1 coding NC_007125.7 CM002898.2 26452740 ~ 26465729 (-)