AMCG00015475


Basic Information

Item Value
gene id AMCG00015475
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10001214 ~ 10012888 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015475
ATGCTGATGCTGTCAGTGCGTGACGGTGACTCGGATTTTGTTGCGCTCTGGCGGTCTCCGGCTTTAATGCACtcgctggATGAAGGGGAGACAGAGGAGCGCTCTGAGGCGGAGGAAGACAAGGATttcctgcccccccgccccagaACCAAGACCAAAAAGCCCGAAGCACAGCTGGAGGTGGAGCCGGAGCCCCCGTCCCAGGCCAAACGCAGGGGGCGGCCCAAGAAGACCCCTCTTAAGGAGCCCCCGCTGGACACCATGGTCAGCCATCTGCAGTCTCCCACTGTGGTGCTGCGCAGACtgaagatggagggagaggaggaggatgaaggaGAAAGTGAtgcaggggagagagaagagatggagggagaggagcCCACCGGCACCCCTGCCCTGACCACAAGACCCCCAGCCTCCCGCATCCCGACCTTCCACCCCTCCACCGGCCGCCCCCGTCCCCCCGAGAGAGCCACAGGTGCCCAGCTGACCACCTCCCGCCccagccccctgcccccccccacggGCAGGCCGGCTCTGAGTGAGATCCGGGCACAAGGCGGGCTTGAGATGCCGCCTGGGGTTATGACCCCCGCCACCCTGCTTCCAGCCCGACCCGCCCAACGCCCCGCCGCTGTGCCCCCCCGGGCGCTGGAGAAGCAGACCGGGCCTACGGAGCCCAAAAGAGTGGGAGGCTCGGGGCCTGAACCAGAGCCGCCCAAACCCGCCAAGGACACTCCACCTCTCACCTTGGACCCTGTCACCCCCCGAGTCGTCCTATTCCCCTGGCAGGCCACCCCACACCTGCCCCCCGTTGCGCCCCACCGTGCATCgggagtggaggaggaggaggaggaggaaggggcgGGGCACCACAGTCTGCTCACCCCCCGACCGGCGCTGAGGGCGGAGATGGGCCCGGCTCGACCCATCCTGAGGCCCGAGGCGGCCCAGCAGCCTGACCAGCCCAGCGCTGACCTGGCCCCAACCAGGAGGGGTAGACCGAGCCGGGGGCTGCAGGTGGGGAGGGAGCGGGAGACCGGGACCACTGCCccggagagagaggaggagagggagactgGGTCTGCTgtcccagagagagaggaagagagggagactgGGTCTGCTgtcccagagagagaggaggagagggaggaggtaCCACCTGTCTCAGAGGCAGAGAGGGGCAGATCAGCCAGACCCAAGACAGACATCCCGCTTTCGCAGAGGGCACTGCTGCCTCCTGTAACGAAGGGGGAGAGGCAGGAGGTGGGGTCCGCTGTCTCTGAGCCCGGTTCGAAGGGAGAGGCTGTGGCTGACCCTGTGGGTCAGAGAGGGAGACCCAGGAGAGTTGCTGCTGCCtcggagaaagaaagagaattaGAGGCAGTGGCCTTGAAGTCGGAGGCGCGAGGAGAGGCCCCCCGGGCCTCCCAGGGCTGGAGAGAGGAGGCCGTCTTTAAAGTTGGAGCCGGCAGTGGGGAGCCAGCCAGGGTCATAGTCAGGGCCAGGAGGAAGCATGCGGCCTTGAAGGCAGGAGCCGAGAAAGTGGAGGCAGCCTTGGCAGCTGACCCCGCCCCTGAGCCCAGGAAGCAGAGGGGAAAGGGCCGGgtgtgGCGCTGCTGCTCAGCGCTGCTCTGTCTCCTCCCCTTGCTGCTGATCTCAGGGGGGGCAGGGCTGTATGTGTGGCATGCCGGGCTACCCCCCCCCTTGGGTGCGCTGGTGGGCCAGATGGACCTGGACTGGCTGTGGGCGGGTGGGCCCTGGGGCCAGGAGCCCTGTAGCACTGACTGCAGCCTGTCCCTGGTGGAGAGTCTCCCTGAGGGGCTTAATTTTGGCCCCCAGGCCCCTCTCCTGCCCTCCATTGCCGAAGCCTGGGAGGGCCTGCTCCGCTCGGCAAATCACAGCGTCAACATCGCTGCCTTCTACTTCACCCTGAGGGACACCGACACGGGTGGCCCCCTGCCTAGCGCACTGCCGGGCCAGCGCATCTTTGAGCAGCTGAAGGGGCTTCAGTCGCGGGGGGTCCGGCTGCGCATCGCCGTCAATGGGCCCCAGAGCTACACCCGGGACACCGAGGAGCTGGCGGCCGCGGGTGCGGAGGTGCGCAGCGTGGAGCTGAAGAACCTGACCGGGGGCATCGTGCACACCAAGCTGTGGGTGCTGGACAACGAGCACGCCTACATTGGCAGCGCCAACATGGACTGGCGCTCCCTCACCCAGGTAAAGGAGCTGGGGGTGCTGATCAGGAACTGCAGCTGTCTGGCGCAGGAcgtgtctcagctgttccaggTCTCCCCGCCCCCACTGCTGGCACATGGACGCACGGACGACCTGGCGGCCATTGAGGGTGCGATCGGGGACGCTCGGCGCATCGTATTCGTGTCGGTGATGGACTTCCTGCCCTCCTCGCAGTTCCAGCAGCCGGCCCGGTTCTGGCCAGTGCTGGACGGGGCGCTGCGGGCGGCGGgctgtgggggggtggaggttCGCCTTCTGGTCAGCTGCTGGGCGCACTCCCCCCCTGCCATGTTCGTGTACCTGCGGTCCCTCGCCGTCCTGCAGGAGCCACCCCTGAGCTGCAACATACACGTGCGAGTTTTCCAGGTTCCCTCCAGTGAGGCTCAGCAGCAGATCCCCTTCTCCAGGGTGAACCACGCCAAGTACCTGGTGACGGACAGAGTCGCCTACATAGGAACCTCTAACTGGTCGGAGGATTACTTCACGCAGACGGCAGGTGTGGGCATGGTAGTGAACCAGACCAGGGGGCCGGCAGGGGGGCTGCGGGGGGAGCTGCAGGCTGTGTTCCAGAGGGACTGGGAGTCCAGCTACACCACGCCCCTGCGTGCCGAGCACACCCAGCTCTGCGGCAAGCACACGTAGGCACACTGAACACAGaaaatgccacacacacacacactgaacacagtgaataccacacacatacacacacacacacacacacacacagtggacaccacacactgtacacactgcacaccacaCATAGGCACACCTATACACACAGATAACTCCCCACACCCACAGCCAGAGCCCGGTCTGGAGTGGTGCTGGCCCACTGTGGCTCTGGAGACCCAGTCCTGCTGGACCTCAGGACTCAGCGCTcatacacagcacacagatgcCATCAAAATTAGTGGTCTCACTCTGTACATGCTAACTACCATGCACtctcacacaaaacacaacaatgtaaatacagtgtagataTTCTTTAAAGGAAcaaactccctctctctgcataATCAGAACAGTTCAGCAGTTTAGAGGTGACATTGATGTTGTTAGTTATTTACTCAGtcagttctttttttctttttttgatacTGTGCGCTACTGAGGTTGCCTGGTGCTTTGGTGACCACTGGAAGAATGTGTgttagcatgtgtgtgtgtgtgtgtgtgtgtctgtccttgcgcgcatatatatatatttgtgagagagtgtgtgtgtgtgtgtgtgtcctgtactGTGGTAACAGTAGGGCTAgtcacagcagcagtgtccaTCTCTTAGGCCTCAGGCGGACAGACGCACTTCAGGTTGTCTATTATTCGCGGAATTTAAGCCATTTTTTAAggacaaatgtaatttttaatgtggtttgttttttctattttcaaataggttgtacatatatatggtgtgtctgtctgtcagtttgtCTGGTTTTTGCTACAGTTAAGCTCATAATGGCCAAAGTTAATCAAAGCCCTTTTGACGCAgctaatttttttattattttatttcttgatcTCACTTGTTGACTGTGTTCCTGTGACCTtgtgttctgtctgtctgtctgtctgtctgtcctccaCTGCCTTTATCAGCTGTTCCTCCCATCTACTGCACTGTGCTCCACTATCATCAGGGCCCTGTGTTCTGTGCATTGTGTCCACATAACTGCTGTGGCCAAAAGTGCGAAACATGGAGCCCTGACTACGatacactgtgctgtagtgtgctatattaaaatgtaacaaaccagtgtgtgctgtataatattgtaataatgtaatatacaatACCATActgtaacaaacaaaactgttctGTATTCCtgtatacaaaaatgaaatatattctaCAGGACTGTGGTATGCGGTGTTATATGATTAGTGACTGTACTGTAGGGAACAATATAATAAGTAATCAAGCATAAGAtgctgcactggactggactggactacaGGTGTTGAAATCACTCCCTGACCTCTTGGAAATGATCAGATGAAGCAAGCGGGTCAAACAGAGTTTAGTCAGCGGAGTGCCTCAGCTGGGGACCACTGGGCTTGAAGATTATGTCTGTACACACGTTTCATTTGTTGTACATGTTGTATCTCCTCCTCCC
>TU122320
gagagagtgtgtgtgtgtgtgtgtgtgtgtgtcctgtactGTGGTAACAGTAGGGCTAgtcacagcagcagtgtccaTCTCTTAGGCCTCAGGCGGACAGACGCACTTCAGGTTGTCTATTATTCGCGGAATTTAAGCCATTTTTTAAggacaaatgtaatttttaatgtggtttgttttttctattttcaaataggttgtacatatatatggtgtgtctgtctgtcagtttgtCTGGTTTTTGCTACAGTTAAGCTCATAATGGCCAAAGTTAATCAAAGCCCTTTTGACGCAgctaatttttttattattttatttcttgatcTCACTTGTTGACTGTGTTCCTGTGACCTtgtgttctgtctgtctgtctgtctgtctgtcctccaCTGCCTTTATCAGCTGTTCCTCCCATCTACTGCACTGTGCTCCACTATCATCAGGGCCCTGTGTTCTGTGCATTGTGTCCACATAACTGCTGTGGCCAAAAGTGCGAAACATGGAGCCCTGACTACGatacactgtgctgtagtgtgctatattaaaatgtaacaaaccagtgtgtgctgtataatattgtaataatgtaatatacaatACCATActgtaacaaacaaaactgttctGTATTCCtgtatacaaaaatgaaatatattctaCAGGACTGTGGTATGCGGTGTTATATGATTAGTGACTGTACTGTAGGGAACAATATAATAAGTAATCAAGCATAAGAtgctgcactggactggactggactacaGGTGTTGAAATCACTCCCTGACCTCTTGGAAATGATCAGATGAAGCAAGCGGGTCAAACAGAGTTTAGTCAGCGGAGTGCCTCAGCTGGGGACCACTGGGCTTGAAGATTATGTCTGTACACACGTTTCATTTGTTGTACATGTTGTATCTCCTCCTCCCCcataaataaaccttttcttATAATGT

Function

GO: NA

KEGG:

id description
K16860 PLD3_4; phospholipase D3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015475 True 4376 mRNA 0.59 11 10006603 10012861
TU122320 False 950 lncRNA 0.41 2 10001214 10012888

Neighbor

gene id symbol gene type direction distance location
AMCG00015474 syvn1 coding upstream 5056 9988652 ~ 9996158 (+)
AMCG00015472 NA coding upstream 14719 9982802 ~ 9986495 (+)
AMCG00015463 NA coding upstream 35760 9961526 ~ 9965454 (+)
AMCG00015462 NA coding upstream 54148 9945834 ~ 9947066 (+)
AMCG00015466 LOC107741474,LOC107557052 coding upstream 57541 9935143 ~ 9943673 (+)
AMCG00015476 rpb7,POLR2G,polr2gl,polr2g coding downstream 178 10013066 ~ 10015706 (+)
AMCG00015473 eef1g,LOC107661998 coding downstream 3568 10016456 ~ 10027569 (+)
AMCG00015484 NA coding downstream 69116 10082004 ~ 10083086 (+)
AMCG00015483 NA coding downstream 82201 10095089 ~ 10099174 (+)
AMCG00015480 NA coding downstream 145940 10158828 ~ 10161768 (+)
G98060 NA non-coding upstream 122078 9878459 ~ 9879136 (+)
G97999 NA non-coding upstream 295178 9705724 ~ 9706036 (+)
G97998 NA non-coding upstream 298105 9702836 ~ 9703109 (+)
G97989 NA non-coding upstream 343348 9655468 ~ 9657866 (+)
G97777 NA non-coding upstream 653970 9345762 ~ 9347244 (+)
G98195 NA non-coding downstream 183739 10196627 ~ 10197404 (+)
G98255 NA non-coding downstream 310370 10323258 ~ 10323970 (+)
G98244 LOC106578020 non-coding downstream 326220 10339108 ~ 10340845 (+)
G98277 NA non-coding downstream 352494 10365382 ~ 10365647 (+)
G98282 NA non-coding downstream 365719 10378607 ~ 10379031 (+)
AMCG00015464 NA other upstream 70368 9929592 ~ 9930846 (+)
G98053 NA other upstream 129209 9815718 ~ 9872005 (+)
AMCG00015456 NA other upstream 139078 9851672 ~ 9862136 (+)
G98025 NA other upstream 240526 9757073 ~ 9760688 (+)
G98000 NA other upstream 290485 9706097 ~ 9710729 (+)
G98093 NA other downstream 72540 10085428 ~ 10086512 (+)
AMCG00015492 NA other downstream 200113 10213001 ~ 10222496 (+)
G98251 NA other downstream 304020 10316908 ~ 10317325 (+)
AMCG00015504 NA other downstream 398999 10411887 ~ 10418700 (+)
G98302 NA other downstream 435278 10448166 ~ 10450663 (+)

Expression


Co-expression Network