AMCG00015476 (rpb7,POLR2G,polr2gl,polr2g)


Basic Information

Item Value
gene id AMCG00015476
gene name rpb7,POLR2G,polr2gl,polr2g
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10013066 ~ 10015706 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015476
TTGTCACGGAGTGCGGAGAGTTCACCCACTCTGGCGGCGCTGTATTGTTCTGTCTGACACCACAAATACACGTTTAGTTGTTTTGGGTTCAAATAATCCCCGCTGGTGGCTGGAAGCCTAAGAGACGGTCGCGATGTTTTATCACCACGAGATCCTGCTCCACCCGCGTTACTTCGGGCCCAACCTGCTGAACACGGTCAAGCAGAAGCTGTTCACTGAGGTGGAGGGGACCTGCACGGGCAAGTATGGCTTTGTTATCGCTGTGACGACTATCGACAACATCGGTGCGGGGGTGATCCAGCCGGGCCGGGGCTTCGTGCTGTACCCCGTCAAGTACAAGGCCATCGTGTTCCGGCCCTTCAAGGGGGAGGTGGTGGATGCCGTGGTCACCCAGGTCAACAAGGTGGGGCTCTTCACCGAGATCGGGCCCATGTCGTGCTTCATCTCTCGCCATgacaTTGTGATCCAGCAGGACGATGAGATCAGACTGAAGATCGTAGGAACCAGAGTGGACAAGAACGACATTtttgccattggttcccTGATGGATGATTATCTGGgtCTCGTCAGCTGATGTTTCTGCAGGAAGAACTGCAATAgagttatatttttataagcTGTCAGGATTTAGCATTCCTTGCCCTAACACACGCAccagcacacacatacacattcatatACACATACCATGCTTTTGTTATACCGCTGTTATAGCATTGCTGTCTGTGTTGACGGCCTGTGCCGCAATTTCCTCTAgagattgtaaaatgttttaataaaagtgtttttctgtaGTTGTTGAA

Function

symbol description
polr2g Predicted to enable single-stranded DNA binding activity; single-stranded RNA binding activity; and translation initiation factor binding activity. Predicted to be involved in regulation of gene expression and transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II, core complex. Predicted to be active in P-body. Orthologous to human POLR2G (RNA polymerase II subunit G).
rpb7 Enables single-stranded DNA binding activity; single-stranded RNA binding activity; and translation initiation factor binding activity. Contributes to RNA-directed 5'-3' RNA polymerase activity. Involved in regulation of gene expression and transcription initiation from RNA polymerase II promoter. Located in P-body and nucleus. Part of RNA polymerase II, core complex. Used to study cancer. Orthologous to human POLR2G (RNA polymerase II subunit G).

NR:

description
DNA-directed RNA polymerase II 19 kDa polypeptide

GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03015 RPB7, POLR2G; DNA-directed RNA polymerase II subunit RPB7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015476 True 803 mRNA 0.50 7 10013066 10015706

Neighbor

gene id symbol gene type direction distance location
AMCG00015474 syvn1 coding upstream 16908 9988652 ~ 9996158 (+)
AMCG00015472 NA coding upstream 26571 9982802 ~ 9986495 (+)
AMCG00015463 NA coding upstream 47612 9961526 ~ 9965454 (+)
AMCG00015462 NA coding upstream 66000 9945834 ~ 9947066 (+)
AMCG00015466 LOC107741474,LOC107557052 coding upstream 69393 9935143 ~ 9943673 (+)
AMCG00015473 eef1g,LOC107661998 coding downstream 750 10016456 ~ 10027569 (+)
AMCG00015484 NA coding downstream 66298 10082004 ~ 10083086 (+)
AMCG00015483 NA coding downstream 79383 10095089 ~ 10099174 (+)
AMCG00015480 NA coding downstream 143122 10158828 ~ 10161768 (+)
AMCG00015481 LOC104949171 coding downstream 151921 10167627 ~ 10176121 (+)
G98060 NA non-coding upstream 133930 9878459 ~ 9879136 (+)
G97999 NA non-coding upstream 307030 9705724 ~ 9706036 (+)
G97998 NA non-coding upstream 309957 9702836 ~ 9703109 (+)
G97989 NA non-coding upstream 355200 9655468 ~ 9657866 (+)
G97777 NA non-coding upstream 665822 9345762 ~ 9347244 (+)
G98195 NA non-coding downstream 180921 10196627 ~ 10197404 (+)
G98255 NA non-coding downstream 307552 10323258 ~ 10323970 (+)
G98244 LOC106578020 non-coding downstream 323402 10339108 ~ 10340845 (+)
G98277 NA non-coding downstream 349676 10365382 ~ 10365647 (+)
G98282 NA non-coding downstream 362901 10378607 ~ 10379031 (+)
AMCG00015475 NA other upstream 178 10001214 ~ 10012888 (+)
AMCG00015464 NA other upstream 82220 9929592 ~ 9930846 (+)
G98053 NA other upstream 141061 9815718 ~ 9872005 (+)
AMCG00015456 NA other upstream 150930 9851672 ~ 9862136 (+)
G98025 NA other upstream 252378 9757073 ~ 9760688 (+)
G98093 NA other downstream 69722 10085428 ~ 10086512 (+)
AMCG00015492 NA other downstream 197295 10213001 ~ 10222496 (+)
G98251 NA other downstream 301202 10316908 ~ 10317325 (+)
AMCG00015504 NA other downstream 396181 10411887 ~ 10418700 (+)
G98302 NA other downstream 432460 10448166 ~ 10450663 (+)

Expression


Co-expression Network